View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16004_low_6 (Length: 411)

Name: NF16004_low_6
Description: NF16004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16004_low_6
NF16004_low_6
[»] chr7 (14 HSPs)
chr7 (21-411)||(27301563-27301953)
chr7 (19-125)||(27304418-27304524)
chr7 (26-193)||(27220263-27220427)
chr7 (19-78)||(27243129-27243188)
chr7 (19-142)||(27249098-27249221)
chr7 (19-78)||(27271607-27271666)
chr7 (19-78)||(27281718-27281777)
chr7 (19-78)||(27296186-27296245)
chr7 (27-78)||(27312646-27312697)
chr7 (333-411)||(27304726-27304808)
chr7 (328-378)||(27249410-27249460)
chr7 (29-78)||(27165576-27165625)
chr7 (333-382)||(27282029-27282078)
chr7 (21-78)||(27322919-27322976)
[»] chr1 (5 HSPs)
chr1 (26-121)||(14889884-14889979)
chr1 (26-142)||(14884212-14884328)
chr1 (153-247)||(14889758-14889852)
chr1 (333-382)||(14883975-14884024)
chr1 (333-382)||(14889626-14889675)


Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 21 - 411
Target Start/End: Original strand, 27301563 - 27301953
Alignment:
Q  21 tcaaagttacttgcttggctatgatatgcttggttttgtgcattccattagccaatgcgtcacttacatgtgatgaagtgaaacaaaatttaacaccatg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27301563 tcaaagttacttgcttggctatgatatgcttggttttgtgcattccattagccaatgcttcacttacatgtgatgaagtgaaacaaaatttaacaccatg 27301662  T
Q  121 ccttccttatgtaacaaacccacatacattatctccccctgatcaatgttgcaacggggttaagactgtaaatgacaacgcccagactaaacctgaccgt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  27301663 ccttccttatgtaacaaacccacatacattatctccccctgatcaatgttgcaacggggttaagactgtaaatgacaacgcccagattaaacctgatcgt 27301762  T
Q  221 caagatgtttgtaggtgcctcaaatcccttttgaccggcgtacctgggctcaatggaactgtcgcttctaccctcccttcggactgtggtatcaactttc 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27301763 caagatgtttgtaggtgcctcaaatcccttttgaccggcgtacctgggctcaatggaactgtcgcttctaccctcccttcggactgtggtatcaactttc 27301862  T
Q  321 gctgccctattggccctgacatggactgcgacaagtacagctctcaccaccaaccctcttttgcgattaatggattctctaccctattagc 411  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  27301863 gctgccctattggccctgacatggactgcgacaagtacatctctcaccaccaaccctttttttcgattaatggattctctgccctattagc 27301953  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 27304418 - 27304524
Alignment:
Q  19 tgtcaaagttacttgcttggctatgatatgcttggttttgtgcattccattagccaatgcgtcacttacatgtgatgaagtgaaacaaaatttaacacca 118  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||  | | | |||||  || |||| |||||| ||||||| ||    
T  27304418 tgtcaaagttacttgcttggctatgatatgcttggttttgggcattccactagccagtgctgccccttcatgtcctgcagtgcaacaaactttaacaaca 27304517  T
Q  119 tgccttc 125  Q
    |||||||    
T  27304518 tgccttc 27304524  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 27220263 - 27220427
Alignment:
Q  26 gttacttgcttggctatgatatgcttggttttgtgcattccattagccaatgcgtcacttacatgtgatgaagtgaaacaaaatttaacaccatgccttc 125  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||  | | | |||||  || ||||  ||||| |||||||||||||||||    
T  27220263 gttacttgtttggctatgatatgcttggttttgggcattccattagccaatgctgccccttcatgtcctgcagtggcacaaactttaacaccatgccttc 27220362  T
Q  126 cttatgtaacaaacccacatacattatctccccctgatcaatgttgcaacggggttaagactgtaaat 193  Q
    |  | ||| ||||||||  | |   |||||||||| | | |||||||||  ||||||||||| |||||    
T  27220363 cgcacgtatcaaacccaggtcc---atctccccctcaaccatgttgcaatagggttaagactttaaat 27220427  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 27243129 - 27243188
Alignment:
Q  19 tgtcaaagttacttgcttggctatgatatgcttggttttgtgcattccattagccaatgc 78  Q
    |||||| |||||||| |||||||||||||||||||||||| |||||||| ||||||||||    
T  27243129 tgtcaaggttacttgtttggctatgatatgcttggttttgggcattccactagccaatgc 27243188  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 27249098 - 27249221
Alignment:
Q  19 tgtcaaagttacttgcttggctatgatatgcttggttttgtgcattccattagccaatgcgtcacttacatgtgatgaagtgaaacaaaatttaacacca 118  Q
    |||||| |||||||| ||||||||||||||||| |||||| |||||||| |||| |||||  | | | |||||  ||||||| |||||| |||| |||||    
T  27249098 tgtcaaggttacttgtttggctatgatatgcttagttttgggcattccactagctaatgctgctccttcatgtcctgaagtgcaacaaactttagcacca 27249197  T
Q  119 tgccttccttatgtaacaaaccca 142  Q
    ||| |||| || |||||| |||||    
T  27249198 tgcgttccgtacgtaacacaccca 27249221  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 27271607 - 27271666
Alignment:
Q  19 tgtcaaagttacttgcttggctatgatatgcttggttttgtgcattccattagccaatgc 78  Q
    |||||| |||||||| |||||||||||||||||||||||| |||||||| ||||||||||    
T  27271607 tgtcaaggttacttgtttggctatgatatgcttggttttgagcattccactagccaatgc 27271666  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 27281718 - 27281777
Alignment:
Q  19 tgtcaaagttacttgcttggctatgatatgcttggttttgtgcattccattagccaatgc 78  Q
    |||||| |||||||| |||||||||||||||||||||||| |||||||| ||||||||||    
T  27281718 tgtcaaggttacttgtttggctatgatatgcttggttttgggcattccactagccaatgc 27281777  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 27296186 - 27296245
Alignment:
Q  19 tgtcaaagttacttgcttggctatgatatgcttggttttgtgcattccattagccaatgc 78  Q
    |||||| |||||||| ||||||| |||||||||||||||| |||||||| ||||||||||    
T  27296186 tgtcaaggttacttgtttggctacgatatgcttggttttgggcattccactagccaatgc 27296245  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 27312646 - 27312697
Alignment:
Q  27 ttacttgcttggctatgatatgcttggttttgtgcattccattagccaatgc 78  Q
    |||||| ||||||||||||||||||||||||| ||| ||| |||||||||||    
T  27312646 ttactttcttggctatgatatgcttggttttgggcactcccttagccaatgc 27312697  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 411
Target Start/End: Original strand, 27304726 - 27304808
Alignment:
Q  333 gccctgacatggactgcgacaa----gtacagctctcaccaccaaccctcttttgcgattaatggattctctaccctattagc 411  Q
    |||||||||||||||||  |||    ||||| ||||||||| |||||||||||| | | ||||||||||||| ||||||||||    
T  27304726 gccctgacatggactgcagcaagtacgtacatctctcaccatcaaccctctttttctaataatggattctctgccctattagc 27304808  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 27249410 - 27249460
Alignment:
Q  328 tattggccctgacatggactgcgacaagtacagctctcaccaccaaccctc 378  Q
    |||| ||||| ||||||||||| ||||||||| ||||||||| ||||||||    
T  27249410 tattagccctaacatggactgcaacaagtacatctctcaccatcaaccctc 27249460  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 27165576 - 27165625
Alignment:
Q  29 acttgcttggctatgatatgcttggttttgtgcattccattagccaatgc 78  Q
    ||||| ||| || |||||||||||||||||  ||||||||||||||||||    
T  27165576 acttgtttgtctgtgatatgcttggttttggccattccattagccaatgc 27165625  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 382
Target Start/End: Original strand, 27282029 - 27282078
Alignment:
Q  333 gccctgacatggactgcgacaagtacagctctcaccaccaaccctctttt 382  Q
    |||||| ||||||||||  |||||||| ||||||||| ||||||||||||    
T  27282029 gccctggcatggactgcagcaagtacatctctcaccatcaaccctctttt 27282078  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 27322919 - 27322976
Alignment:
Q  21 tcaaagttacttgcttggctatgatatgcttggttttgtgcattccattagccaatgc 78  Q
    |||| ||||||||||| ||  ||||||||||||||||  ||||||| |||||||||||    
T  27322919 tcaaggttacttgcttagcagtgatatgcttggtttttggcattcccttagccaatgc 27322976  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 14889979 - 14889884
Alignment:
Q  26 gttacttgcttggctatgatatgcttggttttgtgcattccattagccaatgcgtcacttacatgtgatgaagtgaaacaaaatttaacaccatgc 121  Q
    |||||||| |||||||||||||||||||||||| |||||||| | |||||| |  ||| | |||||  ||||||| |||||| |||| ||||||||    
T  14889979 gttacttgtttggctatgatatgcttggttttgagcattccactggccaattctgcaccttcatgtcctgaagtgcaacaaactttagcaccatgc 14889884  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 14884328 - 14884212
Alignment:
Q  26 gttacttgcttggctatgatatgcttggttttgtgcattccattagccaatgcgtcacttacatgtgatgaagtgaaacaaaatttaacaccatgccttc 125  Q
    |||||||| ||||||||| |||||||||||||| |||||||| |||||||| |  | | | |||||  | ||||| |||||| |||| |||||||| |||    
T  14884328 gttacttgtttggctatgttatgcttggttttgggcattccaatagccaattctgccccttcatgtcctcaagtgcaacaaactttagcaccatgcattc 14884229  T
Q  126 cttatgtaacaaaccca 142  Q
    | ||  |||||||||||    
T  14884228 cgtacctaacaaaccca 14884212  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 14889852 - 14889758
Alignment:
Q  153 ctccccctgatcaatgttgcaacggggttaagactgtaaatgacaacgcccagactaaacctgaccgtcaagatgtttgtaggtgcctcaaatcc 247  Q
    |||||||||| | ||||||||| |||||||||||| |||||||| | ||||  ||| |||  || |||| |||||||||  | ||||||||||||    
T  14889852 ctccccctgaaccatgttgcaatggggttaagactttaaatgaccaagcccgaactcaacaagatcgtcgagatgtttgcggttgcctcaaatcc 14889758  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 382
Target Start/End: Complemental strand, 14884024 - 14883975
Alignment:
Q  333 gccctgacatggactgcgacaagtacagctctcaccaccaaccctctttt 382  Q
    |||||||||||||||||  |||||| | ||||||||| ||||||||||||    
T  14884024 gccctgacatggactgcagcaagtatatctctcaccatcaaccctctttt 14883975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 382
Target Start/End: Complemental strand, 14889675 - 14889626
Alignment:
Q  333 gccctgacatggactgcgacaagtacagctctcaccaccaaccctctttt 382  Q
    |||||||||||||||||  |||||| | ||||||||| ||||||||||||    
T  14889675 gccctgacatggactgcagcaagtatatctctcaccatcaaccctctttt 14889626  T

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