View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16004_low_7 (Length: 407)

Name: NF16004_low_7
Description: NF16004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16004_low_7
NF16004_low_7
[»] chr4 (39 HSPs)
chr4 (156-335)||(31307052-31307231)
chr4 (152-329)||(38766071-38766248)
chr4 (156-330)||(14854586-14854760)
chr4 (152-302)||(46016155-46016308)
chr4 (172-330)||(45994503-45994661)
chr4 (170-333)||(35334098-35334262)
chr4 (158-330)||(35972324-35972496)
chr4 (152-280)||(9012301-9012429)
chr4 (152-274)||(51626288-51626410)
chr4 (160-310)||(46250545-46250698)
chr4 (156-316)||(38844154-38844314)
chr4 (172-330)||(13686582-13686741)
chr4 (160-316)||(17135092-17135247)
chr4 (159-243)||(33529325-33529409)
chr4 (165-276)||(13948587-13948698)
chr4 (193-329)||(22189411-22189547)
chr4 (170-330)||(45695808-45695968)
chr4 (225-325)||(56447177-56447277)
chr4 (228-299)||(11140469-11140540)
chr4 (152-330)||(7096077-7096254)
chr4 (159-317)||(3649034-3649193)
chr4 (156-330)||(32005132-32005311)
chr4 (168-306)||(22017469-22017607)
chr4 (174-333)||(10199111-10199267)
chr4 (284-333)||(18069337-18069386)
chr4 (230-330)||(51853679-51853778)
chr4 (225-328)||(29597456-29597559)
chr4 (181-288)||(47023425-47023532)
chr4 (195-297)||(14042843-14042945)
chr4 (287-332)||(42615793-42615838)
chr4 (193-241)||(9455576-9455624)
chr4 (233-301)||(48998068-48998136)
chr4 (172-211)||(5341269-5341308)
chr4 (158-213)||(15133473-15133528)
chr4 (158-240)||(18841556-18841639)
chr4 (287-330)||(25768769-25768812)
chr4 (160-302)||(2434568-2434710)
chr4 (231-329)||(6188792-6188892)
chr4 (257-325)||(25712503-25712571)
[»] chr7 (37 HSPs)
chr7 (156-330)||(29059786-29059960)
chr7 (156-317)||(31492097-31492258)
chr7 (170-330)||(19477250-19477409)
chr7 (186-330)||(13254117-13254261)
chr7 (167-330)||(8839278-8839441)
chr7 (158-330)||(21747028-21747199)
chr7 (156-330)||(28537371-28537541)
chr7 (152-330)||(46373654-46373834)
chr7 (193-330)||(7265336-7265473)
chr7 (200-327)||(40099302-40099429)
chr7 (152-332)||(42741791-42741974)
chr7 (221-332)||(2657887-2657998)
chr7 (159-329)||(20207480-20207649)
chr7 (186-254)||(14545000-14545068)
chr7 (152-240)||(37339715-37339803)
chr7 (179-322)||(27484058-27484201)
chr7 (156-330)||(35707828-35708001)
chr7 (226-332)||(7190415-7190521)
chr7 (156-269)||(11486730-11486843)
chr7 (156-280)||(24172238-24172364)
chr7 (158-235)||(31776494-31776571)
chr7 (266-330)||(32469911-32469975)
chr7 (152-291)||(23933633-23933772)
chr7 (230-330)||(12142607-12142707)
chr7 (152-328)||(24579434-24579610)
chr7 (233-320)||(5905813-5905900)
chr7 (225-304)||(40211960-40212039)
chr7 (152-294)||(1424590-1424734)
chr7 (157-214)||(28665187-28665244)
chr7 (267-326)||(21972303-21972362)
chr7 (180-302)||(37900381-37900503)
chr7 (180-302)||(37906892-37907014)
chr7 (183-299)||(2870988-2871104)
chr7 (203-328)||(24512609-24512734)
chr7 (170-235)||(29428792-29428857)
chr7 (171-292)||(30614683-30614804)
chr7 (186-302)||(4059709-4059824)
[»] chr8 (27 HSPs)
chr8 (156-330)||(2743914-2744088)
chr8 (152-330)||(4125006-4125184)
chr8 (156-320)||(13468731-13468895)
chr8 (162-330)||(12958077-12958245)
chr8 (158-326)||(19715713-19715882)
chr8 (181-312)||(15682928-15683059)
chr8 (156-330)||(30935985-30936159)
chr8 (172-330)||(36994502-36994660)
chr8 (181-321)||(30056012-30056152)
chr8 (156-260)||(7839239-7839343)
chr8 (157-275)||(24988530-24988653)
chr8 (197-320)||(35206991-35207114)
chr8 (206-323)||(32422808-32422926)
chr8 (258-333)||(44705650-44705725)
chr8 (224-319)||(27121804-27121899)
chr8 (211-321)||(10030948-10031058)
chr8 (276-330)||(39086799-39086853)
chr8 (199-332)||(44638962-44639095)
chr8 (186-302)||(21032306-21032421)
chr8 (200-302)||(16701409-16701511)
chr8 (158-208)||(39086855-39086905)
chr8 (224-332)||(4321558-4321666)
chr8 (193-244)||(8034152-8034203)
chr8 (152-215)||(8521794-8521856)
chr8 (177-329)||(23981478-23981632)
chr8 (225-332)||(28377637-28377744)
chr8 (229-330)||(33404341-33404442)
[»] chr2 (38 HSPs)
chr2 (152-328)||(5394380-5394555)
chr2 (156-330)||(42745102-42745276)
chr2 (160-330)||(9438126-9438296)
chr2 (156-330)||(31579215-31579389)
chr2 (156-340)||(17981469-17981652)
chr2 (160-328)||(18105353-18105520)
chr2 (217-330)||(44732620-44732733)
chr2 (199-330)||(12133259-12133390)
chr2 (208-332)||(7157477-7157601)
chr2 (158-329)||(993736-993906)
chr2 (228-330)||(37568785-37568887)
chr2 (162-332)||(7020352-7020520)
chr2 (175-330)||(44752199-44752354)
chr2 (152-277)||(37179983-37180103)
chr2 (171-330)||(39401070-39401229)
chr2 (152-234)||(25423821-25423903)
chr2 (170-280)||(38743769-38743879)
chr2 (154-302)||(38372978-38373124)
chr2 (246-330)||(28365930-28366014)
chr2 (195-327)||(17627543-17627675)
chr2 (169-297)||(14121881-14122009)
chr2 (152-228)||(14551557-14551633)
chr2 (184-320)||(33756968-33757104)
chr2 (195-302)||(17658471-17658578)
chr2 (156-215)||(37092181-37092240)
chr2 (201-327)||(17672615-17672741)
chr2 (232-333)||(3772605-3772706)
chr2 (200-303)||(13986967-13987070)
chr2 (200-303)||(13992865-13992968)
chr2 (268-330)||(19252590-19252652)
chr2 (152-213)||(1682120-1682181)
chr2 (268-329)||(40107289-40107350)
chr2 (152-306)||(38463960-38464114)
chr2 (210-284)||(39314473-39314547)
chr2 (200-277)||(2562375-2562452)
chr2 (225-330)||(24359546-24359650)
chr2 (246-290)||(25988641-25988685)
chr2 (234-322)||(42905689-42905776)
[»] chr5 (25 HSPs)
chr5 (152-330)||(10591908-10592086)
chr5 (152-321)||(31113324-31113493)
chr5 (157-270)||(5123485-5123598)
chr5 (158-330)||(30784974-30785146)
chr5 (156-320)||(22187984-22188146)
chr5 (186-329)||(18909317-18909457)
chr5 (175-330)||(2798320-2798474)
chr5 (221-330)||(28023494-28023603)
chr5 (175-330)||(2804487-2804641)
chr5 (153-274)||(35774622-35774743)
chr5 (159-323)||(12682623-12682787)
chr5 (174-245)||(36212962-36213033)
chr5 (156-234)||(25983742-25983820)
chr5 (172-328)||(41446654-41446810)
chr5 (152-214)||(373746-373808)
chr5 (225-320)||(3525909-3526003)
chr5 (200-330)||(10795348-10795476)
chr5 (195-290)||(12336053-12336148)
chr5 (232-322)||(23422711-23422801)
chr5 (164-204)||(22402074-22402114)
chr5 (157-244)||(29553606-29553693)
chr5 (233-330)||(3741108-3741205)
chr5 (264-333)||(26607229-26607298)
chr5 (177-244)||(15386108-15386176)
chr5 (263-311)||(29783195-29783243)
[»] scaffold0182 (1 HSPs)
scaffold0182 (156-310)||(26332-26486)
[»] chr3 (33 HSPs)
chr3 (160-330)||(30995955-30996125)
chr3 (152-330)||(48204293-48204471)
chr3 (156-330)||(25224680-25224854)
chr3 (160-330)||(27763704-27763872)
chr3 (152-333)||(38331106-38331287)
chr3 (152-329)||(40294594-40294771)
chr3 (157-270)||(20861289-20861402)
chr3 (174-330)||(14352535-14352694)
chr3 (152-329)||(15283057-15283230)
chr3 (207-330)||(38088616-38088739)
chr3 (152-274)||(55123134-55123256)
chr3 (153-309)||(48210943-48211099)
chr3 (152-288)||(39950235-39950371)
chr3 (152-273)||(1642644-1642765)
chr3 (156-333)||(22288213-22288390)
chr3 (219-329)||(42514586-42514698)
chr3 (156-224)||(8757431-8757499)
chr3 (267-333)||(46604657-46604723)
chr3 (152-280)||(11767141-11767269)
chr3 (153-277)||(43621294-43621420)
chr3 (230-302)||(22755653-22755725)
chr3 (195-290)||(21223479-21223574)
chr3 (180-275)||(15446028-15446127)
chr3 (231-316)||(28967243-28967328)
chr3 (287-332)||(38349725-38349770)
chr3 (156-243)||(25739155-25739243)
chr3 (156-203)||(40318435-40318482)
chr3 (160-222)||(44941255-44941316)
chr3 (200-333)||(20711744-20711877)
chr3 (287-332)||(20786905-20786950)
chr3 (234-278)||(20616145-20616189)
chr3 (247-291)||(21742513-21742557)
chr3 (225-305)||(50518609-50518689)
[»] chr6 (25 HSPs)
chr6 (158-335)||(21910181-21910357)
chr6 (156-320)||(12411139-12411303)
chr6 (156-278)||(12836883-12837005)
chr6 (152-330)||(31412104-31412281)
chr6 (157-302)||(28099252-28099397)
chr6 (186-329)||(423637-423780)
chr6 (173-323)||(21028982-21029136)
chr6 (152-329)||(278374-278550)
chr6 (157-334)||(15614560-15614737)
chr6 (224-320)||(25084025-25084121)
chr6 (158-333)||(31107481-31107656)
chr6 (172-333)||(28933116-28933277)
chr6 (172-323)||(3237908-3238058)
chr6 (152-243)||(1534320-1534409)
chr6 (284-333)||(27432172-27432221)
chr6 (171-243)||(6062110-6062182)
chr6 (160-234)||(9536844-9536918)
chr6 (167-255)||(3660645-3660732)
chr6 (173-254)||(21028845-21028924)
chr6 (225-333)||(26477754-26477862)
chr6 (181-265)||(29986794-29986878)
chr6 (228-330)||(35224552-35224651)
chr6 (234-333)||(33792949-33793048)
chr6 (231-320)||(27735469-27735557)
chr6 (229-313)||(13684442-13684526)
[»] chr1 (43 HSPs)
chr1 (152-330)||(16756063-16756241)
chr1 (157-330)||(22022101-22022274)
chr1 (156-330)||(28724654-28724827)
chr1 (152-300)||(18428124-18428271)
chr1 (157-330)||(9780976-9781144)
chr1 (159-326)||(45806221-45806388)
chr1 (161-277)||(39547355-39547471)
chr1 (172-314)||(12035546-12035689)
chr1 (172-333)||(10840995-10841157)
chr1 (156-289)||(36806634-36806766)
chr1 (158-251)||(42297430-42297523)
chr1 (152-240)||(15642526-15642614)
chr1 (231-323)||(29124733-29124825)
chr1 (152-330)||(10750579-10750756)
chr1 (228-333)||(52912599-52912702)
chr1 (158-275)||(7242795-7242912)
chr1 (225-299)||(32883625-32883699)
chr1 (152-240)||(10367575-10367663)
chr1 (232-331)||(36086837-36086936)
chr1 (230-327)||(7624859-7624955)
chr1 (233-330)||(17600561-17600658)
chr1 (152-297)||(46864105-46864250)
chr1 (205-329)||(35692467-35692591)
chr1 (193-315)||(36522259-36522381)
chr1 (158-240)||(44913180-44913262)
chr1 (225-330)||(25655319-25655424)
chr1 (200-280)||(24801412-24801492)
chr1 (158-330)||(32534064-32534235)
chr1 (225-328)||(36982338-36982441)
chr1 (152-223)||(49071665-49071736)
chr1 (273-330)||(14500361-14500418)
chr1 (200-318)||(33059756-33059870)
chr1 (246-302)||(21774612-21774668)
chr1 (164-328)||(31733685-31733849)
chr1 (225-320)||(40019232-40019327)
chr1 (177-275)||(2732038-2732136)
chr1 (247-309)||(9066128-9066190)
chr1 (159-255)||(61161-61256)
chr1 (258-329)||(21089330-21089401)
chr1 (258-332)||(10629759-10629833)
chr1 (200-301)||(13546436-13546537)
chr1 (287-332)||(40701499-40701544)
chr1 (241-306)||(52957419-52957484)
[»] scaffold0009 (2 HSPs)
scaffold0009 (236-327)||(32330-32421)
scaffold0009 (157-241)||(27212-27296)
[»] scaffold0020 (1 HSPs)
scaffold0020 (246-330)||(167836-167918)
[»] scaffold0189 (1 HSPs)
scaffold0189 (174-290)||(10973-11089)
[»] scaffold0013 (1 HSPs)
scaffold0013 (152-216)||(29134-29198)
[»] scaffold0003 (1 HSPs)
scaffold0003 (284-333)||(55142-55191)
[»] scaffold0061 (1 HSPs)
scaffold0061 (284-332)||(36207-36255)
[»] scaffold0017 (1 HSPs)
scaffold0017 (284-332)||(162524-162572)
[»] scaffold0071 (1 HSPs)
scaffold0071 (180-275)||(16065-16164)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 156 - 335
Target Start/End: Original strand, 31307052 - 31307231
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31307052 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatg 31307151  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttggataca 335  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||  |||||||| ||||    
T  31307152 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaagtgctcttgggtaca 31307231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 152 - 329
Target Start/End: Complemental strand, 38766248 - 38766071
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||||||||||||||| ||||||||||||||| |||||| |||||||||||| |||||||||| ||||||| |||||||||||||||||||| ||||||    
T  38766248 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccctaagagttttaacgctgctg 38766149  T
Q  252 catgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttg 329  Q
    |||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38766148 catgcccaaggctggattcaaacccaggaccttggttaagctagaagagactcgttccatctcatctaagcgctcttg 38766071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 156 - 330
Target Start/End: Complemental strand, 14854760 - 14854586
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||| |||||||||| |||| |||||| ||||| ||||| ||||||||||| |||||| |||||||||||||||||||||  |||||||||    
T  14854760 cgggtatcctccgcgcgcaactgcagagactaatccctcgagaattgttggacccaaatgggcggcaagctctccctaagagttttaacgatgctgcatg 14854661  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||||| |||||||||||||||| | ||||||||||||||||||||  ||||||||||||||||| |||||||||    
T  14854660 cccaaggctggattcgaacccagaaccttggttaagctagaagagaaccgttccatctcatctaagcgctcttgg 14854586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 152 - 302
Target Start/End: Complemental strand, 46016308 - 46016155
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||||||||||||||  |||||||| |||||| |||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46016308 aaatcgggtatcctccacgcgcaactacggagactaattcttcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctg 46016209  T
Q  252 catgcccaagactggattcgaacccagga---tcttggttaagctagaagagac 302  Q
    |||||||||| ||||||||||||||||||    |||||||||||||||||||||    
T  46016208 catgcccaaggctggattcgaacccaggacctacttggttaagctagaagagac 46016155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 172 - 330
Target Start/End: Complemental strand, 45994661 - 45994503
Alignment:
Q  172 gcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcg 271  Q
    ||||||||||||| |||||  |||||||||||| |||||||||| ||| ||||||||||||||||||||||||  || |||||||||||| |||||||||    
T  45994661 gcaactgcggagactaatctctcgagcattgtgagacccaaatgggcgtcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcg 45994562  T
Q  272 aacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    || |||||| |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  45994561 aatccaggaccttggttaagctagaagagacctgttccatctcatctaaacgctcttgg 45994503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 170 - 333
Target Start/End: Original strand, 35334098 - 35334262
Alignment:
Q  170 gcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggatt 269  Q
    ||||||||||||||| |||||| ||||| ||||||||||||||||| ||||| | ||||| |||||||||||||| |||||||||||||||| ||| ||     
T  35334098 gcgcaactgcggagactaatccctcgagtattgtgggacccaaatgggcggcggactctctctaagagttttaactctgctgcatgcccaaggctgaata 35334197  T
Q  270 cgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaa-cgctcttggata 333  Q
    |||||| || | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  35334198 cgaaccaagaaccttggttaagctagaagagacttgttccatctcatctaaagcgctcttggata 35334262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 158 - 330
Target Start/End: Complemental strand, 35972496 - 35972324
Alignment:
Q  158 ggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcc 257  Q
    |||||||||||  |||||||||||||| |||||| |||| ||| |||||||||||||| ||||||  |||||||||| ||||||||| |||||| |||||    
T  35972496 ggtatcctccgcacgcaactgcggagactaatccctcgaacatagtgggacccaaatgggcggcaaactctccctaatagttttaacgctgctgtatgcc 35972397  T
Q  258 caagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    || | ||||||||||||||| || ||||||||||||||||||| | ||||||||||||||||| |||||||||    
T  35972396 catggctggattcgaacccaagaccttggttaagctagaagaggcccgttccatctcatctaagcgctcttgg 35972324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 152 - 280
Target Start/End: Complemental strand, 9012429 - 9012301
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||| || |||||| ||||||||||||||||| ||||||||||    
T  9012429 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaagctctccctaagagtttgaacactgctg 9012330  T
Q  252 catgcccaagactggattcgaacccagga 280  Q
    |||||||||| || |||||||||||||||    
T  9012329 catgcccaaggctagattcgaacccagga 9012301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 152 - 274
Target Start/End: Original strand, 51626288 - 51626410
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||||||||||||||| ||||||||||||||| |||||  ||||||| |||||||||||||||  |||||| |||||||||| ||||||||||||||||    
T  51626288 aaatcgggtatcctccgcgcgcaactgcggagactaatctctcgagcactgtgggacccaaatggacggcagactctccctaaaagttttaacactgctg 51626387  T
Q  252 catgcccaagactggattcgaac 274  Q
    |||||||||| ||||||||||||    
T  51626388 catgcccaaggctggattcgaac 51626410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 160 - 310
Target Start/End: Original strand, 46250545 - 46250698
Alignment:
Q  160 tatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgccca 259  Q
    ||||||||  || |||| ||||||| |||| | |||||||| |||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||    
T  46250545 tatcctccacgcacaaccgcggagactaattcttcgagcatcgtgggacccaaatgggcggcaggctttccataagagttttaacactgctgcatgccca 46250644  T
Q  260 agactggattcgaacccagga---tcttggttaagctagaagagactcgttcca 310  Q
    |||||||||||||||| ||||    ||||||||||||||||||| | |||||||    
T  46250645 agactggattcgaacctaggacctacttggttaagctagaagagccccgttcca 46250698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 156 - 316
Target Start/End: Original strand, 38844154 - 38844314
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||| | ||| ||| |  |||| |||||  ||||||||||||||   |||||| ||||||| |||| ||||||||||||||| ||| ||||||    
T  38844154 cgggtatcctctgcgcgtaacagtagagactaatctctcgagcattgtgggggtcaaatgggcggcagactcttcctaagagttttaacgctgttgcatg 38844253  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcat 316  Q
    |||||  |||||||||||| || || |||||||||||||||||||||||||||||||||||    
T  38844254 cccaaagctggattcgaactcatgaccttggttaagctagaagagactcgttccatctcat 38844314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 172 - 330
Target Start/End: Complemental strand, 13686741 - 13686582
Alignment:
Q  172 gcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccct-aagagttttaacactgctgcatgcccaagactggattc 270  Q
    ||||||| ||||| |||||  |||||| ||||| ||||||||||  |||||  |||||||| |||||||||||| |||||||| |||||||  |||||||    
T  13686741 gcaactgtggagactaatctctcgagccttgtgagacccaaatggacggcaaactctcccttaagagttttaacgctgctgcacgcccaaggatggattc 13686642  T
Q  271 gaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||||||||| ||||||||||| ||||||||| | | ||||||||||||| |||||||||    
T  13686641 gaacccaggaccttggttaagcaagaagagacccatgccatctcatctaagcgctcttgg 13686582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 160 - 316
Target Start/End: Complemental strand, 17135247 - 17135092
Alignment:
Q  160 tatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgccca 259  Q
    ||||||||||||||||||   |||| |||||| |||||  || |||||| |||||| ||||||  |||||||||||||||||||| ||||||||||| ||    
T  17135247 tatcctccgtgcgcaacttttgagactaatccctcgagtcttctgggactcaaatgcgcggcaaactctccctaagagttttaacgctgctgcatgcaca 17135148  T
Q  260 agactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcat 316  Q
    || ||||||||||| | ||||  ||| |||||||||||||||| |||  ||||||||    
T  17135147 aggctggattcgaa-ctaggactttgattaagctagaagagacacgtgtcatctcat 17135092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 33529409 - 33529325
Alignment:
Q  159 gtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaa 243  Q
    |||||||||||||||||||||||||| |||||| || || ||||||||||||||||| |||||| ||||||||||||||||||||    
T  33529409 gtatcctccgtgcgcaactgcggagactaatccctccagtattgtgggacccaaatgggcggcaagctctccctaagagttttaa 33529325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 165 - 276
Target Start/End: Original strand, 13948587 - 13948698
Alignment:
Q  165 tccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagact 264  Q
    |||| |||||||||| |||| |||||| |||||||||||| ||  ||||||  ||| || |||||||||||||||||||||||||||||| |||||| ||    
T  13948587 tccgcgcgcaactgcagagactaatccctcgagcattgtgagattcaaatggacggtagactctccctaagagttttaacactgctgcatacccaaggct 13948686  T
Q  265 ggattcgaaccc 276  Q
    ||||||||||||    
T  13948687 ggattcgaaccc 13948698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 193 - 329
Target Start/End: Original strand, 22189411 - 22189547
Alignment:
Q  193 tcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagc 292  Q
    |||||| |||||||||||| ||  ||||||  |||| ||||||||||||||   |||||||||| ||||  ||||||||||| | ||| |||||||||||    
T  22189411 tcgagccttgtgggacccatataggcggcaatctctacctaagagttttaatgttgctgcatgcacaaggttggattcgaactctggaccttggttaagc 22189510  T
Q  293 tagaagagactcgttccatctcatctaaacgctcttg 329  Q
    |||||||||||| |  ||||||||||||  |||||||    
T  22189511 tagaagagactcatgtcatctcatctaagtgctcttg 22189547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 170 - 330
Target Start/End: Original strand, 45695808 - 45695968
Alignment:
Q  170 gcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggatt 269  Q
    ||||||||||  ||| ||||||||| ||| |||| | |||||||||  || || ||||||| ||| | ||||||| ||||| ||||| ||||  ||||||    
T  45695808 gcgcaactgcatagactaatccatcaagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgctcaaggttggatt 45695907  T
Q  270 cgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    | ||||||||| |||||| || |||||| |||||||||| ||||||||||| || ||||||    
T  45695908 caaacccaggaccttggtcaaactagaaaagactcgttctatctcatctaagcgttcttgg 45695968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 225 - 325
Target Start/End: Original strand, 56447177 - 56447277
Alignment:
Q  225 ctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgc 324  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||| ||||  |||||||| |||||||| || |||  |||||| |||||||||    
T  56447177 ctctccctaagagttttaacactgctgcatgcccatagctggattcgaacctaggactttggttaaactagaagaaacccgtgacatctcttctaaacgc 56447276  T
Q  325 t 325  Q
    |    
T  56447277 t 56447277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 11140540 - 11140469
Alignment:
Q  228 tccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaaga 299  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||| |||||| ||||||||||||||||||    
T  11140540 tccctaagagttttaaagctgctgcatgcccaaggctggattcgaaaccaggaccttggttaagctagaaga 11140469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 330
Target Start/End: Complemental strand, 7096254 - 7096077
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    |||||||||||| |||| | ||||||| | ||| |||||  | |||||||||  |||| ||||| |||| | |||||||||||||||||||||  |||||    
T  7096254 aaatcgggtatc-tccgcgtgcaactgtgcagactaatctcttgagcattgtaagacctaaatgggcggtaagctctccctaagagttttaactttgctg 7096156  T
Q  252 catgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    ||| | |||||||| |||| ||||||  | |||||||||||||||||| ||  ||  |||||||||||| || ||||||    
T  7096155 catactcaagactgtattcaaacccaaaaccttggttaagctagaagaaacctgtgtcatctcatctaagcgttcttgg 7096077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 317
Target Start/End: Original strand, 3649034 - 3649193
Alignment:
Q  159 gtatcctccgtgcgcaact-gcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcc 257  Q
    |||||||||||| |||||| |  |||| |||||| |||||  ||||| || |||||||||||| |  ||||||||||||||||||||  || ||||||||    
T  3649034 gtatcctccgtgtgcaacttgtagagactaatccttcgagtcttgtgcgatccaaatgagcggaaaactctccctaagagttttaacgttgttgcatgcc 3649133  T
Q  258 caagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatc 317  Q
    ||||||| ||||  || |||  || |||||||| ||| |||||||||||  |||||||||    
T  3649134 caagactagatttaaatccaaaattttggttaaactaaaagagactcgtgtcatctcatc 3649193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 330
Target Start/End: Original strand, 32005132 - 32005311
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactg-----ct 250  Q
    ||||||||||||| ||  || |||||||| |||||  ||||||||| || || | ||||  ||||||| ||||||||||||||||||||||||      |    
T  32005132 cgggtatcctccgcgcataattgcggagactaatctctcgagcattttgagatctaaataggcggcagactctccctaagagttttaacactgatgcaat 32005231  T
Q  251 gcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    ||||||||||  ||| |||||||| |||||  ||||||||| ||||||||||   |||||||||||| || | |||||||    
T  32005232 gcatgcccaaagctgaattcgaactcaggactttggttaagttagaagagacctattccatctcatccaagctctcttgg 32005311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 306
Target Start/End: Complemental strand, 22017607 - 22017469
Alignment:
Q  168 gtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactgga 267  Q
    |||||||||||  ||||||||||  |||| ||||||| ||  |||||  |||||| ||| |||||||| |||||||||||||| ||| | ||||||||||    
T  22017607 gtgcgcaactgtagagattaatcgctcgatcattgtgtgattcaaataggcggcaagctttccctaagggttttaacactgctacatactcaagactgga 22017508  T
Q  268 ttcgaacccaggatcttggttaagctagaagagactcgt 306  Q
    || ||| |||  || ||| ||||| ||||||||||||||    
T  22017507 tttgaatccaaaattttgattaagttagaagagactcgt 22017469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 333
Target Start/End: Original strand, 10199111 - 10199267
Alignment:
Q  174 aactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaa 273  Q
    ||||||||||| || ||| ||||| ||| ||| ||  ||||| |||||| ||||||| ||||  ||||||| ||||  ||||| ||||  ||||||||||    
T  10199111 aactgcggagactattccttcgagtattatggaacttaaatgggcggcaagctctccttaag--ttttaacgctgccacatgctcaagt-tggattcgaa 10199207  T
Q  274 cccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttggata 333  Q
    | || || |||||||||| || ||||||| ||||||||||||||||| | ||||||||||    
T  10199208 cacaagaccttggttaagttataagagacccgttccatctcatctaagcactcttggata 10199267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 18069337 - 18069386
Alignment:
Q  284 tggttaagctagaagagactcgttccatctcatctaaacgctcttggata 333  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||    
T  18069337 tggttaagctagaagagactcgtgtcatctcatctaaacgctcttggata 18069386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 51853778 - 51853679
Alignment:
Q  230 cctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttg 329  Q
    ||||||||||||||    |||||||||||||| ||| ||||||||| || |  ||||||||| |||||||||||| ||| ||||||||||| ||||||||    
T  51853778 cctaagagttttaaggaagctgcatgcccaaggctgaattcgaacc-agaactttggttaagttagaagagactcattctatctcatctaagcgctcttg 51853680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 328
Target Start/End: Complemental strand, 29597559 - 29597456
Alignment:
Q  225 ctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgc 324  Q
    ||||| ||||||||||||||  || |||||||||||||||| ||| |||| || || ||| |||||| || || | ||||||  ||||||||||||||||    
T  29597559 ctctctctaagagttttaacgttgttgcatgcccaagactgaatttgaactcaagacctttgttaagttaaaaaaaactcgtgtcatctcatctaaacgc 29597460  T
Q  325 tctt 328  Q
    ||||    
T  29597459 tctt 29597456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 288
Target Start/End: Complemental strand, 47023532 - 47023425
Alignment:
Q  181 gagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccagga 280  Q
    |||| |||||| |||||  ||||||||||||||||  || ||  ||||||||||||||||||||  || |||||||| ||| ||||||| ||||| ||||    
T  47023532 gagactaatccttcgagtcttgtgggacccaaatggacgacaaactctccctaagagttttaactttgttgcatgcctaagtctggattggaaccaagga 47023433  T
Q  281 tcttggtt 288  Q
     |||||||    
T  47023432 ccttggtt 47023425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 297
Target Start/End: Complemental strand, 14042945 - 14042843
Alignment:
Q  195 gagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagcta 294  Q
    ||||||||||| | |||||||  || || | |||||| |||||||| ||| | ||||||||||||||||| ||||||||||||| |  ||||||||| ||    
T  14042945 gagcattgtggaatccaaatggacgacatgttctccccaagagtttaaacgcggctgcatgcccaagacttgattcgaacccagaacgttggttaagtta 14042846  T
Q  295 gaa 297  Q
    |||    
T  14042845 gaa 14042843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 42615838 - 42615793
Alignment:
Q  287 ttaagctagaagagactcgttccatctcatctaaacgctcttggat 332  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  42615838 ttaagctagaagagactcgtgtcatctcatctaaacgctcttggat 42615793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 9455576 - 9455624
Alignment:
Q  193 tcgagcattgtgggacccaaatgagcggcaggctctccctaagagtttt 241  Q
    |||||||||||||||| |||||||| |||| ||||| ||||||||||||    
T  9455576 tcgagcattgtgggactcaaatgagtggcaagctcttcctaagagtttt 9455624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 48998068 - 48998136
Alignment:
Q  233 aagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagaga 301  Q
    |||||||||||| ||| |||||| |||||||| ||||||||| ||||| |||| ||||| || ||||||    
T  48998068 aagagttttaacgctgatgcatgtccaagactcgattcgaactcaggaccttgattaagttaaaagaga 48998136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 5341269 - 5341308
Alignment:
Q  172 gcaactgcggagattaatccatcgagcattgtgggaccca 211  Q
    |||||| |||||||||||||||||||||||||| ||||||    
T  5341269 gcaactacggagattaatccatcgagcattgtgcgaccca 5341308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 15133528 - 15133473
Alignment:
Q  158 ggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaa 213  Q
    ||||||||||| ||||||||||||||| |||||  || | ||||||||||||||||    
T  15133528 ggtatcctccgcgcgcaactgcggagactaatctctcaaacattgtgggacccaaa 15133473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 18841639 - 18841556
Alignment:
Q  158 ggtatcctccgtgcgcaact-gcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttt 240  Q
    |||||||||||||||||||| ||||||| |||||| | |||| |||| ||| ||||||  ||||||  |||| |||||||||||    
T  18841639 ggtatcctccgtgcgcaacttgcggagactaatcccttgagccttgtaggatccaaattggcggcaaactctacctaagagttt 18841556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 25768769 - 25768812
Alignment:
Q  287 ttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||    
T  25768769 ttaaactagaagagacccgttccatctcatctaagcgctcttgg 25768812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 302
Target Start/End: Complemental strand, 2434710 - 2434568
Alignment:
Q  160 tatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgccca 259  Q
    |||||||||  |||||||||||| |  ||||  |||||| |||| ||||| ||||||||| ||  || | | |||||||||||||  || || ||| |||    
T  2434710 tatcctccgcccgcaactgcggataccaatcactcgagccttgtaggacctaaatgagcgacaaacttttcgtaagagttttaacgttgttgtatgtcca 2434611  T
Q  260 agactggattcgaacccaggatcttggttaagctagaagagac 302  Q
    || ||||||||||||| |  || ||||||||| | ||||||||    
T  2434610 aggctggattcgaacctaaaattttggttaagattgaagagac 2434568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 329
Target Start/End: Original strand, 6188792 - 6188892
Alignment:
Q  231 ctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagc--tagaagagactcgttccatctcatctaaacgctctt 328  Q
    ||||||||||||||| || || ||||| |||||| ||||| ||| ||||   |||||||| |  ||||| |||||| | | |||||||||||||||||||    
T  6188792 ctaagagttttaacattgttgaatgccaaagactagattcaaactcagggctttggttaaactatagaaaagactcatgcaatctcatctaaacgctctt 6188891  T
Q  329 g 329  Q
    |    
T  6188892 g 6188892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 325
Target Start/End: Original strand, 25712503 - 25712571
Alignment:
Q  257 ccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgct 325  Q
    |||||||||||||||||  || || |||| |||||||||| |||||| ||  |||||||||||| ||||    
T  25712503 ccaagactggattcgaattcatgaccttgtttaagctagaggagacttgtatcatctcatctaagcgct 25712571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 156 - 330
Target Start/End: Complemental strand, 29059960 - 29059786
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||| ||||||||||||||| |||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29059960 cgggtatcctccgcgcgcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatg 29059861  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||  ||||||||    
T  29059860 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaagtgctcttgg 29059786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 156 - 317
Target Start/End: Complemental strand, 31492258 - 31492097
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||| ||||||||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  31492258 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacactgctgcatg 31492159  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatc 317  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  31492158 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatc 31492097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 170 - 330
Target Start/End: Original strand, 19477250 - 19477409
Alignment:
Q  170 gcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggatt 269  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||  ||||| ||||||||||||||||||||||||| |||||||||||| |||||||    
T  19477250 gcgcaactgcggagactaatccctc-agcattgtgggacccaaatggccggcaagctctccctaagagttttaacactgttgcatgcccaaggctggatt 19477348  T
Q  270 cgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    | ||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19477349 caaacccagaaccttggttaagctagaagagacccgttccatctcatctaaacgctcttgg 19477409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 186 - 330
Target Start/End: Original strand, 13254117 - 13254261
Alignment:
Q  186 taatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttg 285  Q
    |||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| ||| |||||||||||| ||| |||||||||||| ||||| ||||    
T  13254117 taatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaactcaggaccttg 13254216  T
Q  286 gttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||    
T  13254217 gttaagctagaagagacccgttccatctcatctaagcgctcttgg 13254261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 167 - 330
Target Start/End: Original strand, 8839278 - 8839441
Alignment:
Q  167 cgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactgg 266  Q
    ||||||||| |||||||| |||||| ||||| ||||||||| | ||||  |||||||  ||||||||||||||||||| |||||||||||||||| ||||    
T  8839278 cgtgcgcaattgcggagactaatccctcgagtattgtgggatctaaataggcggcagattctccctaagagttttaacgctgctgcatgcccaaggctgg 8839377  T
Q  267 attcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||||||||||||| ||||||||||||||||||||| |||| |||||||||||| |||||||||    
T  8839378 attcgaacccaggaccttggttaagctagaagagacccgtttcatctcatctaagcgctcttgg 8839441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 158 - 330
Target Start/End: Original strand, 21747028 - 21747199
Alignment:
Q  158 ggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcc 257  Q
    ||||||||||| || |||||||| ||| |||||| ||||| ||||||||||||||||| | || ||||||||||||||||||||||| |||| |||||||    
T  21747028 ggtatcctccgcgcacaactgcgaagactaatccctcgaggattgtgggacccaaatgggtggtaggctctccctaagagttttaacgctgcagcatgcc 21747127  T
Q  258 caagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
     ||  ||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||    
T  21747128 taaagctggattcg-acccaggaccttggttaagttagaagagacccgttccatctcatctaaacgctcttgg 21747199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 156 - 330
Target Start/End: Complemental strand, 28537541 - 28537371
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    |||||||||| || | ||||||||||||| |||||| || |||||    ||||||||||| ||||||||||||||||||||||||||||  || ||||||    
T  28537541 cgggtatccttcgcgtgcaactgcggagactaatccctcaagcat----ggacccaaatgggcggcaggctctccctaagagttttaacgttgttgcatg 28537446  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||||| |||||||||||||||  | |||| ||||| |||||||||| ||||||||||||||||| |||||||||    
T  28537445 cccaaggctggattcgaacccaaaaccttgattaagttagaagagacccgttccatctcatctaagcgctcttgg 28537371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 152 - 330
Target Start/End: Complemental strand, 46373834 - 46373654
Alignment:
Q  152 aaatcgggtatcctccgtgcgc--aactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgc 249  Q
    |||||||||||| |||| ||||  ||||||  ||| |||||  |||||||||||| |||||||||  |||||| |||||||||| ||||||||||  ||     
T  46373834 aaatcgggtatcttccgcgcgcgaaactgccaagactaatctctcgagcattgtgtgacccaaataggcggcaagctctccctacgagttttaacgatgt 46373735  T
Q  250 tgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    || ||||||||||||||||||||||||||||||||| |||||||||||||||| ||   ||||||||||||  ||||||||    
T  46373734 tgtatgcccaagactggattcgaacccaggatcttgcttaagctagaagagacccgcgtcatctcatctaagagctcttgg 46373654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 193 - 330
Target Start/End: Original strand, 7265336 - 7265473
Alignment:
Q  193 tcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagc 292  Q
    ||||| |||||||||||||||||||| |||  |||||||||||||||||||||  ||||||||||||||||| ||| ||||||||  |  ||||||||||    
T  7265336 tcgagtattgtgggacccaaatgagcagcaaactctccctaagagttttaacatcgctgcatgcccaagactagatccgaacccaaaactttggttaagc 7265435  T
Q  293 tagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||||||||| |||  |||||||| |||||||||||||    
T  7265436 tagaagagacccgtgtcatctcatataaacgctcttgg 7265473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 200 - 327
Target Start/End: Original strand, 40099302 - 40099429
Alignment:
Q  200 ttgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaaga 299  Q
    ||||||||| |||||| |||||| ||||||||||||||||||||  |||||||||  ||||  |||||||||||  ||||||||| ||||||||||||||    
T  40099302 ttgtgggactcaaatgggcggcaagctctccctaagagttttaatgctgctgcatatccaaagctggattcgaattcaggatcttagttaagctagaaga 40099401  T
Q  300 gactcgttccatctcatctaaacgctct 327  Q
    ||| ||||||||||||||||| ||||||    
T  40099402 gacccgttccatctcatctaagcgctct 40099429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 152 - 332
Target Start/End: Original strand, 42741791 - 42741974
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||||||||||||||| |||||||||| ||||||||||| ||||| ||| | ||||||||||| | |||||| ||||||||| ||||||||||||||||    
T  42741791 aaatcgggtatcctccgcgcgcaactgcagagattaatccctcgagtattat-ggacccaaatgggtggcaggttctccctaaaagttttaacactgctg 42741889  T
Q  252 c----atgcccaagact-ggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttggat 332  Q
    |    ||| |  |||||   ||||||||| ||||  ||||||||| ||||||||||  ||||||||||||||||||||||||||||    
T  42741890 cgcaaatg-cggagactaatattcgaacctaggacattggttaagatagaagagacctgttccatctcatctaaacgctcttggat 42741974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 221 - 332
Target Start/End: Original strand, 2657887 - 2657998
Alignment:
Q  221 caggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaa 320  Q
    |||||||||| |||||||||||||  ||||||||||||||| ||| ||| |||| ||||  |||| ||||| ||||||||||||||||||||||||||||    
T  2657887 caggctctccttaagagttttaacgttgctgcatgcccaaggctgtatttgaactcagggccttgattaagttagaagagactcgttccatctcatctaa 2657986  T
Q  321 acgctcttggat 332  Q
     |||||||||||    
T  2657987 gcgctcttggat 2657998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 159 - 329
Target Start/End: Complemental strand, 20207649 - 20207480
Alignment:
Q  159 gtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgccc 258  Q
    |||||||| ||||||||||||||||| |||||| ||||||||||| ||| ||||||| |||||| ||||||| |||||||||||||  || | ||||||     
T  20207649 gtatcctctgtgcgcaactgcggagactaatccctcgagcattgtaggatccaaatgcgcggcaagctctccttaagagttttaacgttgttacatgcct 20207550  T
Q  259 aagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttg 329  Q
    ||| ||| ||| |||||||  ||||| |||||||||||||| |  | |  |||||||||||| ||||||||    
T  20207549 aaggctgaattagaaccca-aatcttagttaagctagaagaaatccatatcatctcatctaagcgctcttg 20207480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 14545068 - 14545000
Alignment:
Q  186 taatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcat 254  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  14545068 taatccatcgagcattgtgggacccaaatggacggcaggctctccctaagagttttaacactgctgcat 14545000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 37339715 - 37339803
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttt 240  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||  ||||||| ||||| ||||||||||    
T  37339715 aaatcgggtatcctccgtgcgcaactgcggagactaatccctcgagcattatgggacccaaataggcggcagactctcactaagagttt 37339803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 322
Target Start/End: Original strand, 27484058 - 27484201
Alignment:
Q  179 cggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccag 278  Q
    ||||||||||||| || ||||| ||| |||||||||    || | |||||||| |||||||||||| |||||||||||||| | |||||||  ||| |||    
T  27484058 cggagattaatccctcaagcatcgtgagacccaaatcgatggaaagctctccccaagagttttaacgctgctgcatgcccatggctggatttaaactcag 27484157  T
Q  279 gatcttggttaagctagaagagactcgttccatctcatctaaac 322  Q
    || |||||||||||||||||||||| ||  ||||||||||||||    
T  27484158 gaccttggttaagctagaagagacttgtgtcatctcatctaaac 27484201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 156 - 330
Target Start/End: Complemental strand, 35708001 - 35707828
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||  |||||||||| |||| |||||| ||||||||||| ||| | ||||| | |||| | ||||||||||| |||||||  || ||||||    
T  35708001 cgggtatcctccacgcgcaactgcagagactaatccctcgagcattgtaggatctaaatgggaggcaagttctccctaagaattttaacgttgttgcatg 35707902  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
     ||||   |||||||||| |||| | ||||||||| |||||||||||  |||| |||| ||||||||||||||||    
T  35707901 tccaaagttggattcgaa-ccagaaccttggttaaactagaagagacctgttcaatctaatctaaacgctcttgg 35707828  T

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Target: chr7; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 332
Target Start/End: Original strand, 7190415 - 7190521
Alignment:
Q  226 tctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgct 325  Q
    ||||||||| ||||||||||| |||||||||||||  ||| |||| ||| ||  | |||||||||||||||||||| |  ||||||||||||||||||||    
T  7190415 tctccctaaaagttttaacacggctgcatgcccaatgctgaattcaaactcataaccttggttaagctagaagagatttattccatctcatctaaacgct 7190514  T
Q  326 cttggat 332  Q
    |||||||    
T  7190515 cttggat 7190521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 156 - 269
Target Start/End: Original strand, 11486730 - 11486843
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||| |||||||||  |||| |||||  | ||||||||||| ||||||||| |||||| ||||| | ||||||||||||||| | ||||||    
T  11486730 cgggtatcctccgcgcgcaactgtagagactaatctcttgagcattgtggaacccaaatgggcggcaagctcttcttaagagttttaacacagatgcatg 11486829  T
Q  256 cccaagactggatt 269  Q
    |||||| |||||||    
T  11486830 cccaaggctggatt 11486843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 280
Target Start/End: Complemental strand, 24172364 - 24172238
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctcccta--agagttttaacactgctgca 253  Q
    ||||||| ||||| ||||||||||  ||| |||||| ||||||||||||||| |||| || |||||| |||||| |||  |||||||||||  || ||||    
T  24172364 cgggtatactccgcgcgcaactgcatagactaatccttcgagcattgtgggatccaagtgggcggcaagctctcactaagagagttttaacgttgttgca 24172265  T
Q  254 tgcccaagactggattcgaacccagga 280  Q
    ||||||||  |||||||||||||||||    
T  24172264 tgcccaaggttggattcgaacccagga 24172238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 31776571 - 31776494
Alignment:
Q  158 ggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaag 235  Q
    |||||||||||  |||||||||| |||||||||| ||||| ||||||||||||||||| || || |||||||||||||    
T  31776571 ggtatcctccgcccgcaactgcgaagattaatccctcgagtattgtgggacccaaatgggcagctggctctccctaag 31776494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 330
Target Start/End: Complemental strand, 32469975 - 32469911
Alignment:
Q  266 gattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    ||||||||| ||  |||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  32469975 gattcgaactcaaaatcttgattaagctagaagagactcgttccatctcatctaaacgcttttgg 32469911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 291
Target Start/End: Original strand, 23933633 - 23933772
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    |||| |||||||||| ||| |||| ||| |||| |||||| || || ||||| | ||| ||||| ||||||  |||||||||| ||||||||  ||  ||    
T  23933633 aaattgggtatcctctgtgtgcaattgcagagactaatccctcaagtattgtcgaacctaaatgggcggcaaactctccctaaaagttttaatgctcttg 23933732  T
Q  252 catgcccaagactggattcgaacccaggatcttggttaag 291  Q
    || || ||||||||||||||||||||||| ||| ||||||    
T  23933733 caagctcaagactggattcgaacccaggaccttagttaag 23933772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 12142707 - 12142607
Alignment:
Q  230 cctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttg 329  Q
    |||||||||||||||  ||||||||||||| ||| | ||||||||| ||||  ||||||||| ||||||||  | ||  ||| |||||||||||||||||    
T  12142707 cctaagagttttaacgatgctgcatgcccatgaccgaattcgaaccaaggactttggttaagttagaagagttttgtgtcatttcatctaaacgctcttg 12142608  T
Q  330 g 330  Q
    |    
T  12142607 g 12142607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 328
Target Start/End: Original strand, 24579434 - 24579610
Alignment:
Q  152 aaatcgggtatcctccgtgc--gcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgc 249  Q
    |||||||||||||||||||   |||||||| |||| |||||  |||||  || | ||| |||||||  |||||  ||||||||||| |||||| || |||    
T  24579434 aaatcgggtatcctccgtgtatgcaactgcagagactaatctctcgagtcttctaggatccaaatggacggca--ctctccctaagtgttttatcaatgc 24579531  T
Q  250 tgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctctt 328  Q
    |||||||  ||  ||| |||||||| ||| | ||||||||| ||||||||||||| |  ||| |||||||| |||||||    
T  24579532 tgcatgcgtaaagctgaattcgaactcagaaccttggttaaactagaagagactcatgtcatgtcatctaatcgctctt 24579610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 320
Target Start/End: Complemental strand, 5905900 - 5905813
Alignment:
Q  233 aagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaa 320  Q
    |||||||||||  ||||||||||||||| | ||||||| | || | ||  ||||||||| |||||||||||||||| |||||||||||    
T  5905900 aagagttttaatgctgctgcatgcccaatattggattcaagcctaagacgttggttaagttagaagagactcgttctatctcatctaa 5905813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 304
Target Start/End: Complemental strand, 40212039 - 40211960
Alignment:
Q  225 ctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactc 304  Q
    |||| |||||||||||||||  || |||||||||||||||||||| ||||||| || |||| |||||||| |||| ||||    
T  40212039 ctcttcctaagagttttaacgttgttgcatgcccaagactggatttgaacccatgaccttgattaagctaaaagaaactc 40211960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 294
Target Start/End: Complemental strand, 1424734 - 1424590
Alignment:
Q  152 aaatcgggtatcctccgtgcgc--aactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgc 249  Q
    ||||||||| |||| |||||||  ||||||||||| |||||  || ||  ||||||||||||||||| |   || ||||||  |||||||||||||||      
T  1424734 aaatcgggtgtccttcgtgcgcgcaactgcggagactaatctctcaagtcttgtgggacccaaatgaacaagagactctcctcaagagttttaacactat 1424635  T
Q  250 tgcatgcccaagactggattcgaacccaggatcttggttaagcta 294  Q
    ||| || |||| | ||||||||||||||  | |||||||||||||    
T  1424634 tgcttgtccaataatggattcgaacccaacaccttggttaagcta 1424590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 28665244 - 28665187
Alignment:
Q  157 gggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaat 214  Q
    |||||||||||| | ||||||||||||| |||||| ||||||||||||||||| ||||    
T  28665244 gggtatcctccgcgtgcaactgcggagactaatccctcgagcattgtgggaccaaaat 28665187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 21972303 - 21972362
Alignment:
Q  267 attcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctc 326  Q
    |||||||| || ||||||| ||||| |||||||||||||| ||||||||| |||||||||    
T  21972303 attcgaactcaagatcttgattaagatagaagagactcgtgccatctcatttaaacgctc 21972362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 302
Target Start/End: Original strand, 37900381 - 37900503
Alignment:
Q  180 ggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccagg 279  Q
    ||||||||||||||||||| |||||||||||||||   ||  |  |||| || ||||||||||||| ||||||||| | |||  | |||| ||||||| |    
T  37900381 ggagattaatccatcgagctttgtgggacccaaattgacgataaactcttcccaagagttttaacattgctgcatgtctaaggtttgatttgaacccatg 37900480  T
Q  280 atcttggttaagctagaagagac 302  Q
    |  |||||||| ||| |||||||    
T  37900481 actttggttaaactaaaagagac 37900503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 302
Target Start/End: Original strand, 37906892 - 37907014
Alignment:
Q  180 ggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccagg 279  Q
    ||||||||||||||||||| |||||||||||||||   ||  |  |||| || ||||||||||||| ||||||||| | |||  | |||| ||||||| |    
T  37906892 ggagattaatccatcgagctttgtgggacccaaattgacgataaactcttcccaagagttttaacattgctgcatgtctaaggtttgatttgaacccatg 37906991  T
Q  280 atcttggttaagctagaagagac 302  Q
    |  |||||||| ||| |||||||    
T  37906992 actttggttaaactaaaagagac 37907014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 299
Target Start/End: Original strand, 2870988 - 2871104
Alignment:
Q  183 gattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatc 282  Q
    ||||||| ||||||   |||| ||||| ||||||||| ||  ||||| | ||||||||||||| || |||||| | |||  ||||||| ||||||| | |    
T  2870988 gattaattcatcgaattttgtaggacctaaatgagcgacaaactctctccaagagttttaacattgttgcatgtctaaggatggattcaaacccagaacc 2871087  T
Q  283 ttggttaagctagaaga 299  Q
    ||||||||| |||||||    
T  2871088 ttggttaagttagaaga 2871104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 24512734 - 24512609
Alignment:
Q  203 tgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagac 302  Q
    |||||||||||||  || ||  ||||||| ||||||||||||  || || ||| |||||  || |||||||  |||||  |||||||| |||||||||||    
T  24512734 tgggacccaaatggacgtcacactctccccaagagttttaacgttgttggatgtccaaggttgtattcgaattcaggacattggttaaactagaagagac 24512635  T
Q  303 tcgttccatctcatctaaacgctctt 328  Q
     |||  ||| |||||||| |||||||    
T  24512634 ccgtgtcatttcatctaatcgctctt 24512609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 29428792 - 29428857
Alignment:
Q  170 gcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaag 235  Q
    |||||||||| |||| |||||| |||| |||||||||| |||||||  |||||  |||||||||||    
T  29428792 gcgcaactgcagagactaatccctcgaacattgtgggatccaaatggtcggcaaactctccctaag 29428857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 30614683 - 30614804
Alignment:
Q  171 cgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattc 270  Q
    ||||||||| |||| |||| | || ||| || || |||| ||||||||| ||  ||||| |||||||||||||| ||| ||||||||||| |||  ||||    
T  30614683 cgcaactgccgagactaattcctcaagctttctgagacctaaatgagcgacaaactctctctaagagttttaacgctgatgcatgcccaaaactaaattc 30614782  T
Q  271 gaacccaggatcttggttaagc 292  Q
     |||  | || |||||||||||    
T  30614783 aaacttaagaccttggttaagc 30614804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 302
Target Start/End: Original strand, 4059709 - 4059824
Alignment:
Q  186 taatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttg 285  Q
    |||||| |||||  ||||| ||||||||| | ||| |  ||||| ||||||||||||||  || ||||||| |||| ||| |||||||| || || ||||    
T  4059709 taatccctcgagtcttgtgtgacccaaataaacggaaaactctctctaagagttttaacgatgttgcatgctcaaggctgtattcgaactca-gaccttg 4059807  T
Q  286 gttaagctagaagagac 302  Q
    ||||| ||| |||||||    
T  4059808 gttaaactaaaagagac 4059824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 8e-68; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 156 - 330
Target Start/End: Complemental strand, 2744088 - 2743914
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||  || || ||||||||||||||||||||||||||||||||    
T  2744088 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatggacgacatgctctccctaagagttttaacactgctgcatg 2743989  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  2743988 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaaatgctcttgg 2743914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 152 - 330
Target Start/End: Original strand, 4125006 - 4125184
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  4125006 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacagtgctg 4125105  T
Q  252 catgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||||||||| || |||||||||||||||  |||||||||||||||||||| |||||||||||||||||  ||||||||    
T  4125106 catgcccaaggcttgattcgaacccaggacattggttaagctagaagagacccgttccatctcatctaagtgctcttgg 4125184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 156 - 320
Target Start/End: Original strand, 13468731 - 13468895
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| ||||||| ||||| |||||||||||||| ||||| ||||    
T  13468731 cgggtatcctccgtgcgcaactgcggagactaatccttcgagcattgtgggactcaaatgggcggcagactctctctaagagttttaacgctgctacatg 13468830  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaa 320  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||    
T  13468831 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctaatctaa 13468895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 162 - 330
Target Start/End: Original strand, 12958077 - 12958245
Alignment:
Q  162 tcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaag 261  Q
    ||||||| |||| |||||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||     
T  12958077 tcctccgcgcgctactgcggagactaatccctcgagcattgtgggacccaaatgggcgacaggctctccctaagagttttaacgctgctgcatgcccaat 12958176  T
Q  262 actggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
     |||||||| |||||| || |||||||||||||||||||||| |||||||||||||||| | |||||||    
T  12958177 gctggattcaaacccatgaccttggttaagctagaagagactagttccatctcatctaagcactcttgg 12958245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 158 - 326
Target Start/End: Original strand, 19715713 - 19715882
Alignment:
Q  158 ggtatcctccgtgcgcaactgcggagattaatcca-tcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgc 256  Q
    ||||| ||||| ||||||||||||||| ||||||  ||||||||||||||||||||||| |||||| ||||||||| ||||||||||| |||||||||||    
T  19715713 ggtattctccgcgcgcaactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaagctctccctgagagttttaacgctgctgcatgc 19715812  T
Q  257 ccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctc 326  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||  |||||||||||||||| |||||    
T  19715813 ccaaggctggattcgaacccaggaccttggttaagctagaaaagacatgttccatctcatctaagcgctc 19715882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 181 - 312
Target Start/End: Complemental strand, 15683059 - 15682928
Alignment:
Q  181 gagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccagga 280  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||    
T  15683059 gagattaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcagga 15682960  T
Q  281 tcttggttaagctagaagagactcgttccatc 312  Q
     |||| ||||||||||||||||||||||||||    
T  15682959 ccttgattaagctagaagagactcgttccatc 15682928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 156 - 330
Target Start/End: Complemental strand, 30936159 - 30935985
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    |||||| | |||| ||||||||||||||| |||||| |||| |||||| ||||||||||| ||||||||||||||||||||||||||||  |||||||||    
T  30936159 cgggtaacatccgcgcgcaactgcggagactaatccctcgaacattgtcggacccaaatgggcggcaggctctccctaagagttttaacgttgctgcatg 30936060  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |  ||| |||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||||  ||||||||    
T  30936059 cttaaggctggattcgaactcaggaccttggttaagttagaagagacccgttccatctcatctaagtgctcttgg 30935985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 172 - 330
Target Start/End: Original strand, 36994502 - 36994660
Alignment:
Q  172 gcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcg 271  Q
    |||||||| |||| |||||| |||||| |||||||||||||||| || |||  |||||| ||||||||||||| |||||||||| ||||| |||||||||    
T  36994502 gcaactgcagagactaatccctcgagccttgtgggacccaaatgggcagcaaactctccttaagagttttaacgctgctgcatgtccaaggctggattcg 36994601  T
Q  272 aacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    ||||||||| ||||||||| |||||||||||  || |||||| |||||| |||||||||    
T  36994602 aacccaggaccttggttaaactagaagagacatgtgccatcttatctaagcgctcttgg 36994660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 181 - 321
Target Start/End: Original strand, 30056012 - 30056152
Alignment:
Q  181 gagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccagga 280  Q
    |||| |||||| ||||||||||||| |||||||||  ||||||||||||||||||||||||||  |||||||||||| ||| ||||||| ||||||| ||    
T  30056012 gagactaatccctcgagcattgtggaacccaaatggacggcaggctctccctaagagttttaatgctgctgcatgcctaaggctggatttgaacccatga 30056111  T
Q  281 tcttggttaagctagaagagactcgttccatctcatctaaa 321  Q
     ||| |||||||||||||||||  |||||||||||||||||    
T  30056112 ccttcgttaagctagaagagacatgttccatctcatctaaa 30056152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 260
Target Start/End: Original strand, 7839239 - 7839343
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||  ||||||||||    
T  7839239 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcatgctctccctaagagttttaaagctgctgcatg 7839338  T
Q  256 cccaa 260  Q
    |||||    
T  7839339 cccaa 7839343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 157 - 275
Target Start/End: Complemental strand, 24988653 - 24988530
Alignment:
Q  157 gggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggct-----ctccctaagagttttaacactgctg 251  Q
    ||||||||||  ||||||| |||||||| |||||| ||||| |||||||||| ||||||||||||| |||     ||||| |||||||||| ||||||||    
T  24988653 gggtatcctcaatgcgcaattgcggagactaatccctcgagtattgtgggactcaaatgagcggcaagctatcccctccccaagagttttagcactgctg 24988554  T
Q  252 catgcccaagactggattcgaacc 275  Q
    |||||||||| |||||||| ||||    
T  24988553 catgcccaaggctggattcaaacc 24988530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 197 - 320
Target Start/End: Complemental strand, 35207114 - 35206991
Alignment:
Q  197 gcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctaga 296  Q
    |||||||||||||||||||  || || ||| ||| ||||||||||||| |||||||||| |||||  |  |||||||||||| |||||||||||| ||||    
T  35207114 gcattgtgggacccaaatggacgacatgctttccttaagagttttaacgctgctgcatgtccaaggttaaattcgaacccagaatcttggttaagttaga 35207015  T
Q  297 agagactcgttccatctcatctaa 320  Q
    ||||||  ||| ||||||||||||    
T  35207014 agagacctgtttcatctcatctaa 35206991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 206 - 323
Target Start/End: Original strand, 32422808 - 32422926
Alignment:
Q  206 gacccaaatgagcggcaggctctccctaagagttttaacactgctgcat-gcccaagactggattcgaacccaggatcttggttaagctagaagagactc 304  Q
    |||||||||| ||||||   |||||| || ||||||||||||||||||| |||||||| || ||||||  ||||||||||||||||| | |||||||||     
T  32422808 gacccaaatgggcggcaatttctcccaaaaagttttaacactgctgcattgcccaagattgaattcgattccaggatcttggttaaggttgaagagactt 32422907  T
Q  305 gttccatctcatctaaacg 323  Q
    ||  |||||||||||||||    
T  32422908 gtgtcatctcatctaaacg 32422926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 258 - 333
Target Start/End: Complemental strand, 44705725 - 44705650
Alignment:
Q  258 caagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttggata 333  Q
    |||| ||||||||||||||| || ||||||||| |||||||||||  |||||||| ||||||||||||||||||||    
T  44705725 caaggctggattcgaacccaagaccttggttaaactagaagagacctgttccatcccatctaaacgctcttggata 44705650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 319
Target Start/End: Original strand, 27121804 - 27121899
Alignment:
Q  224 gctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatcta 319  Q
    ||||| ||||| ||||||||||||| |||||||  ||  |||||||||||||||| |  |||||||||||||||||||| |||   ||||||||||    
T  27121804 gctcttcctaaaagttttaacactgttgcatgcttaaagctggattcgaacccagaactttggttaagctagaagagacccgtgttatctcatcta 27121899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 211 - 321
Target Start/End: Complemental strand, 10031058 - 10030948
Alignment:
Q  211 aaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttcca 310  Q
    ||||| |||||| |||||||||||||||||||||  || || ||| ||||  |  ||||||||| ||| || ||||||||| ||||||| ||||||| ||    
T  10031058 aaatgggcggcaagctctccctaagagttttaacgttgttggatgtccaatgcaagattcgaactcagaattttggttaagttagaagaaactcgtttca 10030959  T
Q  311 tctcatctaaa 321  Q
    ||| |||||||    
T  10030958 tcttatctaaa 10030948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 330
Target Start/End: Complemental strand, 39086853 - 39086799
Alignment:
Q  276 caggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||| |||||||||    
T  39086853 caggaccttggttaagctagaagaggcccgttccatctcatctaagcgctcttgg 39086799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 332
Target Start/End: Complemental strand, 44639095 - 44638962
Alignment:
Q  199 attgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaag 298  Q
    |||||||| | |||||| ||||||  ||||||||||||||||||||  || ||||||| ||||  ||||||| ||  ||||| |||| ||||| ||||||    
T  44639095 attgtggggctcaaatgtgcggcaaactctccctaagagttttaacgttgttgcatgctcaaggttggattcaaattcaggaccttgattaagttagaag 44638996  T
Q  299 agactcgttccatctcatctaaacgctcttggat 332  Q
    ||||  || | |||||| |||| || ||||||||    
T  44638995 agacatgtgcaatctcacctaagcgttcttggat 44638962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 302
Target Start/End: Complemental strand, 21032421 - 21032306
Alignment:
Q  186 taatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttg 285  Q
    |||||| ||||||||||| | || ||||| |||||||  |||||||||| ||||| ||| || ||||||||| ||| ||||||| ||||| | ||| |||    
T  21032421 taatccctcgagcattgtagtactcaaataagcggcaaactctccctaatagtttaaacgct-ctgcatgccaaaggctggatttgaacctatgatattg 21032323  T
Q  286 gttaagctagaagagac 302  Q
    |||||| || |||||||    
T  21032322 gttaagttacaagagac 21032306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 302
Target Start/End: Original strand, 16701409 - 16701511
Alignment:
Q  200 ttgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaaga 299  Q
    ||||||||| |||||| ||  ||  ||||||||||||| |||||  || ||| ||| ||||| |||||||||||||||| | ||| |||||| |||||||    
T  16701409 ttgtgggactcaaatgggctacaaactctccctaagaggtttaaagctactgtatgtccaaggctggattcgaacccagaaccttagttaagatagaaga 16701508  T
Q  300 gac 302  Q
    |||    
T  16701509 gac 16701511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 39086905 - 39086855
Alignment:
Q  158 ggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggac 208  Q
    ||||||||||| | ||||||||||||| |||||| ||||||||||||||||    
T  39086905 ggtatcctccgcgtgcaactgcggagactaatccctcgagcattgtgggac 39086855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 332
Target Start/End: Original strand, 4321558 - 4321666
Alignment:
Q  224 gctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacg 323  Q
    |||||||||||||||||||||  |  |||||| | |||||||||||| ||||||| | |||  ||||||||||||| |    |  ||||||||||||||     
T  4321558 gctctccctaagagttttaacgttattgcatgtctaagactggattcaaacccagaaccttacttaagctagaagaaatctatgtcatctcatctaaacc 4321657  T
Q  324 ctcttggat 332  Q
    |||||||||    
T  4321658 ctcttggat 4321666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 8034152 - 8034203
Alignment:
Q  193 tcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaac 244  Q
    ||||| |||||||||||||||||  | ||| |||||||||||||||||||||    
T  8034152 tcgagtattgtgggacccaaatggactgcaagctctccctaagagttttaac 8034203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 8521856 - 8521794
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatg 215  Q
    |||||||||||| |||| ||||||||| ||| | |||||| |||||||||||||||| ||||||    
T  8521856 aaatcgggtatcttccgcgcgcaactg-ggatactaatccctcgagcattgtgggactcaaatg 8521794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 329
Target Start/End: Original strand, 23981478 - 23981632
Alignment:
Q  177 tgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctct--ccctaagagttttaacactgctgcatgcccaagactggattcgaac 274  Q
    |||||||| |||| | |||||| ||||  |||||||||| | ||||  ||||  | ||||||||||||||  | ||||||| ||||  ||| |||||||     
T  23981478 tgcggagactaattcctcgagccttgtacgacccaaatgggtggcaaactctttctctaagagttttaacgttcctgcatgtccaaagctgaattcgaat 23981577  T
Q  275 ccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttg 329  Q
    |||| | | | ||||||||| |||||||||||  ||||| |||||| ||||||||    
T  23981578 ccagaaccctagttaagctaaaagagactcgtgtcatctgatctaagcgctcttg 23981632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 332
Target Start/End: Complemental strand, 28377744 - 28377637
Alignment:
Q  225 ctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgc 324  Q
    |||||||||||| ||||||   ||||||||||| ||  |||||||||||| || ||  ||| |||||||| |||| ||||||   ||||||| ||| |||    
T  28377744 ctctccctaagaattttaatgttgctgcatgcctaatgctggattcgaactcatgactttgattaagctaaaagaaactcgtgttatctcatgtaagcgc 28377645  T
Q  325 tcttggat 332  Q
    ||||||||    
T  28377644 tcttggat 28377637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 33404341 - 33404442
Alignment:
Q  229 ccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctctt 328  Q
    |||||| ||||||||  ||||| |||||  || | ||||||| |||||| ||  |||||| ||||| |||||||| ||  |||||||||||| |||||||    
T  33404341 ccctaaaagttttaatgctgctacatgcttaaaattggattcaaacccatgactttggttgagctataagagacttgtgtcatctcatctaagcgctctt 33404440  T
Q  329 gg 330  Q
    ||    
T  33404441 gg 33404442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 152 - 328
Target Start/End: Complemental strand, 5394555 - 5394380
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    |||||| |||||||||| | ||||||||||||| ||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  5394555 aaatcgagtatcctccgcgtgcaactgcggagactaatcccacgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaaca-tgctg 5394457  T
Q  252 catgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctctt 328  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  5394456 catgcccaaggctggattcgaacccaggaccttggttaagctagaagagactcgttccatctcatctaagcgctctt 5394380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 156 - 330
Target Start/End: Original strand, 42745102 - 42745276
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||| |||||||||| |||| |||||| |||| |||||||| ||||||||  || |||| ||||||||||||||||||||| |||||||||    
T  42745102 cgggtatcctccgcgcgcaactgctgagactaatccctcgaccattgtggaacccaaataggcagcagactctccctaagagttttaacattgctgcatg 42745201  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||||| ||||||||||||||| || ||||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  42745202 cccaaggctggattcgaacccaagaccttggttaagctataagagacccgttccatctcatctaagcgctcttgg 42745276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 160 - 330
Target Start/End: Original strand, 9438126 - 9438296
Alignment:
Q  160 tatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgccca 259  Q
    ||||||||| ||||||||| ||| | |||||| || ||||||||||||| |||||| |||||||| ||| ||||||||||||||| ||||||||||||||    
T  9438126 tatcctccgcgcgcaactgtggaaactaatccctcaagcattgtgggacacaaatgggcggcaggttcttcctaagagttttaaccctgctgcatgccca 9438225  T
Q  260 agactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    || ||||||||||||| | ||  |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  9438226 aggctggattcgaaccaaagactttggttaagctaaaagagattcgttccatctcatctaaacgctcttgg 9438296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 156 - 330
Target Start/End: Original strand, 31579215 - 31579389
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||| ||||||||||||| | |||| | ||||||||||||||||  ||||| ||||||| |||||||||| ||||||||||||| ||||||    
T  31579215 cgggtatcctccgcgcgcaactgcggaaactaattcctcgagcattgtgggacttaaatgggcggcagactctccctaaaagttttaacactgttgcatg 31579314  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||||| ||||||||||||||| || |||| |||||||||||||||| |||| ||||||||||||  ||||||||    
T  31579315 cccaaggctggattcgaacccaagaccttgattaagctagaagagacccgttacatctcatctaagtgctcttgg 31579389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 156 - 340
Target Start/End: Complemental strand, 17981652 - 17981469
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||| ||||||||||||||| |||||  ||||||||||||||||||||||  |||||| ||||||||||||||||||||   || ||||||    
T  17981652 cgggtatcctccgcgcgcaactgcggagactaatctctcgagcattgtgggacccaaatt-gcggcaagctctccctaagagttttaatgttgttgcatg 17981554  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttggatacagggaa 340  Q
    ||||||||||||||  ||  |||||  |||||||||||||||||||||||||||||||||||||| |||| |||| ||| |||||    
T  17981553 cccaagactggatttaaattcaggactttggttaagctagaagagactcgttccatctcatctaagcgctattgggtaccgggaa 17981469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 160 - 328
Target Start/End: Original strand, 18105353 - 18105520
Alignment:
Q  160 tatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgccca 259  Q
    ||||||||| ||||||||||| ||| |||||| ||||| |||||| ||| |||||| |||||||||||||| ||||| |||||||  || ||||||||||    
T  18105353 tatcctccgcgcgcaactgcg-agactaatccctcgagtattgtgagactcaaatgggcggcaggctctccataagaattttaacgttgttgcatgccca 18105451  T
Q  260 agactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctctt 328  Q
    || |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||    
T  18105452 aggctggattcgaacccaggaccttggttaagctagaagagactcgttccatctcatataagcgctctt 18105520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 217 - 330
Target Start/End: Original strand, 44732620 - 44732733
Alignment:
Q  217 gcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  44732620 gcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctataagagacccgttccatctcat 44732719  T
Q  317 ctaaacgctcttgg 330  Q
    ||||  ||||||||    
T  44732720 ctaagtgctcttgg 44732733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 330
Target Start/End: Original strand, 12133259 - 12133390
Alignment:
Q  199 attgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaag 298  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||  ||||||||| ||||| ||||||||||||||| || |||| ||||||||||||    
T  12133259 attgtaggacccaaatggacggcaggctctccctaagagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttgattaagctagaag 12133358  T
Q  299 agactcgttccatctcatctaaacgctcttgg 330  Q
    |||||||||||||||||||||| |||||||||    
T  12133359 agactcgttccatctcatctaagcgctcttgg 12133390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 208 - 332
Target Start/End: Complemental strand, 7157601 - 7157477
Alignment:
Q  208 cccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgtt 307  Q
    |||||||  ||||||||||||||||||||||||||||  ||||||||||||||| || |||||||||| ||||||||||||||| |||||||||||||||    
T  7157601 cccaaataggcggcaggctctccctaagagttttaacgttgctgcatgcccaaggctagattcgaacctaggatcttggttaagttagaagagactcgtt 7157502  T
Q  308 ccatctcatctaaacgctcttggat 332  Q
    | ||| ||||||| |||| ||||||    
T  7157501 ctatcccatctaagcgctattggat 7157477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 158 - 329
Target Start/End: Complemental strand, 993906 - 993736
Alignment:
Q  158 ggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcc 257  Q
    ||||||||||  ||||||| ||||| | ||||||||  || ||||| ||||||||||| |||||| | ||||||||||||||||| | ||||||||||||    
T  993906 ggtatcctccacgcgcaacggcggaaactaatccattcagtattgtaggacccaaatgggcggcaagttctccctaagagtttta-cgctgctgcatgcc 993808  T
Q  258 caagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttg 329  Q
    ||||  || |||||||||||||| ||||||||||||| ||||||| |||  |||||||||||| ||||||||    
T  993807 caaggttgaattcgaacccaggaccttggttaagctataagagacacgtgtcatctcatctaagcgctcttg 993736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 228 - 330
Target Start/End: Original strand, 37568785 - 37568887
Alignment:
Q  228 tccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctct 327  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||| || |||||||||||||||||  |||||    
T  37568785 tccctaagagttttaacactgctgcatgcctaaggctggattcgaacccaggaccttggttaagctagaagaaacccgttccatctcatctaagtgctct 37568884  T
Q  328 tgg 330  Q
    |||    
T  37568885 tgg 37568887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 162 - 332
Target Start/End: Original strand, 7020352 - 7020520
Alignment:
Q  162 tcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaag 261  Q
    ||||||| |||||||||  |||| |||||  ||||||||||| ||||||||||| |||||| | ||||||||||| |||||||| ||||||||||| ||     
T  7020352 tcctccgcgcgcaactgtcgagactaatcactcgagcattgtaggacccaaatgggcggcaagttctccctaaga-ttttaacattgctgcatgcctaa- 7020449  T
Q  262 actggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttggat 332  Q
    | || |||||||  || || ||||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  7020450 attgaattcgaattcaagaccttggttaagctagaagagacccgtgcaatctcatctaaacgctcttggat 7020520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 175 - 330
Target Start/End: Original strand, 44752199 - 44752354
Alignment:
Q  175 actgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaac 274  Q
    |||| ||||| |||||| ||||| ||||| | ||||||||  | |||| |||||||| ||||||||||||  || ||||||||||||||| |||||||||    
T  44752199 actgtggagactaatccctcgagtattgtagaacccaaattggtggcaagctctcccaaagagttttaacgttgttgcatgcccaagacttgattcgaac 44752298  T
Q  275 ccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    | ||||  ||||||||||||||||||||| ||  |||||||||||| ||| |||||    
T  44752299 ctaggagtttggttaagctagaagagacttgtatcatctcatctaagcgcacttgg 44752354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 152 - 277
Target Start/End: Original strand, 37179983 - 37180103
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||||||||||||||| |||||| |||| ||| |||||| ||||| |||||||||| |||||| ||||||  |||||||||||||     |||||| ||    
T  37179983 aaatcgggtatcctccgcgcgcaagtgcgtagactaatccctcgagtattgtgggactcaaatgggcggcacactctccctaagag-----acactgttg 37180077  T
Q  252 catgcccaagactggattcgaaccca 277  Q
    |||| |||||||||||||||||||||    
T  37180078 catgtccaagactggattcgaaccca 37180103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 171 - 330
Target Start/End: Original strand, 39401070 - 39401229
Alignment:
Q  171 cgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattc 270  Q
    |||||||||||||  |||||   |||||||||||||||| |||||  || |  ||||||||||| ||||||||   | ||||||||||||| ||| ||||    
T  39401070 cgcaactgcggagtctaatctcacgagcattgtgggacctaaatggacgacgagctctccctaaaagttttaatgatactgcatgcccaaggctgaattc 39401169  T
Q  271 gaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    ||| ||| ||||||||||||| || || ||||||||  ||||||||||||||| ||||||    
T  39401170 gaatccaagatcttggttaagttaaaaaagactcgtgtcatctcatctaaacgttcttgg 39401229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 25423903 - 25423821
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaa 234  Q
    ||||||||||||||||  |||||||||| |||| |||||| ||||||||||||||||||||||| |||||||| |||||||||    
T  25423903 aaatcgggtatcctccacgcgcaactgctgagactaatccctcgagcattgtgggacccaaatgggcggcaggttctccctaa 25423821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 280
Target Start/End: Complemental strand, 38743879 - 38743769
Alignment:
Q  170 gcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggatt 269  Q
    ||||||||||||||| |||||| |  ||||||||| || |||||||||||||| |||||||| || |||||||||  |||||||||||||||||| ||||    
T  38743879 gcgcaactgcggagactaatccctaaagcattgtgagatccaaatgagcggcaagctctccccaaaagttttaacgttgctgcatgcccaagactagatt 38743780  T
Q  270 cgaacccagga 280  Q
    | ||| |||||    
T  38743779 caaactcagga 38743769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 154 - 302
Target Start/End: Original strand, 38372978 - 38373124
Alignment:
Q  154 atcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgca 253  Q
    ||||||||||||||| |||||||||   ||| |||| | | |||||||||||||||||  || |||||| ||||| ||||||||||||| | ||||||||    
T  38372978 atcgggtatcctccgcgcgcaactgtatagactaattccttgagcattgtgggaccca--tgggcggcaagctcttcctaagagttttaccgctgctgca 38373075  T
Q  254 tgcccaagactggattcgaacccaggatcttggttaagctagaagagac 302  Q
    |||  |||  ||||||||||||||||   |||||||||||| |||||||    
T  38373076 tgcataaggttggattcgaacccagggatttggttaagctataagagac 38373124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 246 - 330
Target Start/End: Complemental strand, 28366014 - 28365930
Alignment:
Q  246 ctgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||||||||||||||| ||| |||||||| || || |||||||||| |||||||||| ||||||||||||||||| |||||||||    
T  28366014 ctgctgcatgcccaaggctgcattcgaactcacgaccttggttaagttagaagagacgcgttccatctcatctaagcgctcttgg 28365930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 195 - 327
Target Start/End: Complemental strand, 17627675 - 17627543
Alignment:
Q  195 gagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagcta 294  Q
    |||| ||||||||| |||||| || |||  || ||||||||| |||||||  || |||||||||||| |||||||||||| ||||| |||||||||  ||    
T  17627675 gagccttgtgggactcaaatgggcagcaaactttccctaagaattttaacgttgttgcatgcccaaggctggattcgaactcaggaccttggttaaatta 17627576  T
Q  295 gaagagactcgttccatctcatctaaacgctct 327  Q
    |||||||| |||  |||||| ||||| ||||||    
T  17627575 gaagagacgcgtgtcatctcgtctaagcgctct 17627543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 297
Target Start/End: Original strand, 14121881 - 14122009
Alignment:
Q  169 tgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggat 268  Q
    ||||||||| |  ||| |||||| |||||||||||||||| |||||| |||||| | |||| |||||| |||||||  |||||||||  |||||||| ||    
T  14121881 tgcgcaacttcatagactaatccctcgagcattgtgggactcaaatgggcggcaagttctctctaagaattttaacgttgctgcatgttcaagactgaat 14121980  T
Q  269 tcgaacccaggatcttggttaagctagaa 297  Q
    || ||| ||||| | |||||| |||||||    
T  14121981 tcaaactcaggaccctggttaggctagaa 14122009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 14551633 - 14551557
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctct 228  Q
    |||||| |||||||| | |||||||||||||||||||||| ||||||||||| ||||||||||  ||||||| ||||    
T  14551633 aaatcgagtatcctctgcgcgcaactgcggagattaatccctcgagcattgtaggacccaaataggcggcagactct 14551557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 320
Target Start/End: Complemental strand, 33757104 - 33756968
Alignment:
Q  184 attaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatct 283  Q
    |||||||| || ||||||||| ||  |||||||||| || ||||| ||||||||||||||| ||  || |||| |||| ||| ||||||||  || | ||    
T  33757104 attaatccctcaagcattgtgcgattcaaatgagcgacaagctcttcctaagagttttaacgctattgtatgctcaaggctgaattcgaactaagaacct 33757005  T
Q  284 tggttaagctagaagagactcgttccatctcatctaa 320  Q
    || |||||||||||||||| |||  ||||||||||||    
T  33757004 tgattaagctagaagagacccgtgtcatctcatctaa 33756968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 195 - 302
Target Start/End: Complemental strand, 17658578 - 17658471
Alignment:
Q  195 gagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagcta 294  Q
    |||| ||||||||| |||||| || |||  |||||||||||| |||||||  || |||||||||||| || ||||||||  |||||||||||||||  ||    
T  17658578 gagccttgtgggactcaaatgggcagcaaactctccctaagaattttaacgttgttgcatgcccaaggctagattcgaattcaggatcttggttaaatta 17658479  T
Q  295 gaagagac 302  Q
    ||||||||    
T  17658478 gaagagac 17658471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 37092181 - 37092240
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatg 215  Q
    |||||||||||||||| |||||||||||| |||||| ||||||| |||||||||||||||    
T  37092181 cgggtatcctccgtgcacaactgcggagactaatccctcgagcactgtgggacccaaatg 37092240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 327
Target Start/End: Complemental strand, 17672741 - 17672615
Alignment:
Q  201 tgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagag 300  Q
    |||||||| |||||| || |||  |||||||||||| |||||||  || ||||||||||||  ||||||||||| ||||| |||||||||  | ||||||    
T  17672741 tgtgggactcaaatgggcagcaaactctccctaagaattttaacgttgttgcatgcccaaggttggattcgaactcaggaccttggttaaatttgaagag 17672642  T
Q  301 actcgttccatctcatctaaacgctct 327  Q
    || |||  |||||| ||||| ||||||    
T  17672641 acgcgtgtcatctcgtctaagcgctct 17672615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 333
Target Start/End: Original strand, 3772605 - 3772706
Alignment:
Q  232 taagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgga 331  Q
    |||||| ||||||| || ||||||  ||||| |||||||||||  |||| |||||||||  ||||||||||| ||  |||||||||||| ||||||||||    
T  3772605 taagaggtttaacattgttgcatgttcaagattggattcgaacttaggaccttggttaaattagaagagacttgtgtcatctcatctaagcgctcttgga 3772704  T
Q  332 ta 333  Q
    ||    
T  3772705 ta 3772706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 13986967 - 13987070
Alignment:
Q  200 ttgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaaga 299  Q
    ||||||||| ||||| |||||||  |||||||||| |||||| ||||| |||||||| ||||  |||||||||||  || ||||| | |||| |||||||    
T  13986967 ttgtgggactcaaataagcggcaaactctccctaaaagtttttacactactgcatgctcaaggttggattcgaacaaagaatcttaggtaagttagaaga 13987066  T
Q  300 gact 303  Q
    ||||    
T  13987067 gact 13987070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 13992865 - 13992968
Alignment:
Q  200 ttgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaaga 299  Q
    ||||||||| ||||| |||||||  |||||||||| |||||| ||||| |||||||| ||||  |||||||||||  || ||||| | |||| |||||||    
T  13992865 ttgtgggactcaaataagcggcaaactctccctaaaagtttttacactactgcatgctcaaggttggattcgaacaaagaatcttaggtaagttagaaga 13992964  T
Q  300 gact 303  Q
    ||||    
T  13992965 gact 13992968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 330
Target Start/End: Original strand, 19252590 - 19252652
Alignment:
Q  268 ttcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    ||||||| |||||  |||||||||||| ||||||| |||  ||||||||||||||||||||||    
T  19252590 ttcgaactcaggagtttggttaagctaaaagagacccgtatcatctcatctaaacgctcttgg 19252652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 1682181 - 1682120
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaa 213  Q
    |||| |||||||||| ||||||||||||||||| |||||| ||||| ||| | |||||||||    
T  1682181 aaattgggtatcctctgtgcgcaactgcggagactaatccctcgagtattataggacccaaa 1682120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 329
Target Start/End: Complemental strand, 40107350 - 40107289
Alignment:
Q  268 ttcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttg 329  Q
    |||||||||||||||||  ||||||||||| ||||||||  ||||||| |||| ||||||||    
T  40107350 ttcgaacccaggatcttaattaagctagaaaagactcgtatcatctcaactaatcgctcttg 40107289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 306
Target Start/End: Complemental strand, 38464114 - 38463960
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||| ||||||||||  |||||| |||  ||| |||||  ||||| |||||||||| |||||   |||   |||| | | ||||||||||||  || ||    
T  38464114 aaatcaggtatcctccacgcgcaattgcaaagactaatcactcgagtattgtgggactcaaatagacggttagctccctccaagagttttaacggtgttg 38464015  T
Q  252 catgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgt 306  Q
    |||||||||| ||||||||||| | || |  ||||||||| ||||| ||||||||    
T  38464014 catgcccaaggctggattcgaatctagaactttggttaagttagaaaagactcgt 38463960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 39314547 - 39314473
Alignment:
Q  210 caaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatctt 284  Q
    |||||| ||||||  ||||||||| |||||||||| | ||||||||||||| |||| |||| ||| || ||||||    
T  39314547 caaatgggcggcaaactctccctacgagttttaacgcagctgcatgcccaaaactgaattcaaactcaagatctt 39314473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 277
Target Start/End: Original strand, 2562375 - 2562452
Alignment:
Q  200 ttgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaaccca 277  Q
    |||||||||||||||||||| ||  |||| | |||||||| |||| |||||||||||  ||  ||| |||||||||||    
T  2562375 ttgtgggacccaaatgagcgccaaactcttcataagagttgtaacgctgctgcatgcagaaagctgtattcgaaccca 2562452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 330
Target Start/End: Complemental strand, 24359650 - 24359546
Alignment:
Q  225 ctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgc 324  Q
    |||||||||| ||||||||   ||||||||   |||| |||||||| |||| |||| |||| ||||| |||||||||||  || ||| |||||||| |||    
T  24359650 ctctccctaaaagttttaatgttgctgcattatcaaggctggattcaaacctaggaccttgattaagttagaagagact-atttcatatcatctaagcgc 24359552  T
Q  325 tcttgg 330  Q
    ||||||    
T  24359551 tcttgg 24359546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 25988685 - 25988641
Alignment:
Q  246 ctgctgcatgcccaagactggattcgaacccaggatcttggttaa 290  Q
    |||||| ||||||||| ||| |||||||||||| |||||||||||    
T  25988685 ctgctgtatgcccaaggctgaattcgaacccagaatcttggttaa 25988641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 322
Target Start/End: Original strand, 42905689 - 42905776
Alignment:
Q  234 agagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaac 322  Q
    |||||||||||||||||||||| | |||  |||||||||| | |||| ||| ||||||||| ||||||  ||   ||||||||||||||    
T  42905689 agagttttaacactgctgcatgacaaagtttggattcgaa-ctaggaccttagttaagctaaaagagatccgcgtcatctcatctaaac 42905776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 152 - 330
Target Start/End: Complemental strand, 10592086 - 10591908
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||||||||||||||| |||||||||| |||| |||||| |||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||    
T  10592086 aaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacactgctg 10591987  T
Q  252 catgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||  ||||||||    
T  10591986 catgcccaaggctggattcgaacccaggaccttggttaatctagaagagacccgttccatctcatctaagtgctcttgg 10591908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 152 - 321
Target Start/End: Complemental strand, 31113493 - 31113324
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    |||||||||||||| || ||||||||||||||| |||||| ||||| ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||    
T  31113493 aaatcgggtatccttcgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 31113394  T
Q  252 catgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaa 321  Q
    |||||||||| ||| ||||||||| || | |||  |||||||| || |||| |||| |||||||||||||    
T  31113393 catgcccaaggctgaattcgaacctagaaccttaattaagctaaaaaagacccgtttcatctcatctaaa 31113324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 157 - 270
Target Start/End: Original strand, 5123485 - 5123598
Alignment:
Q  157 gggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgc 256  Q
    |||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5123485 gggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgc 5123584  T
Q  257 ccaagactggattc 270  Q
    ||||| ||| ||||    
T  5123585 ccaaggctgaattc 5123598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 158 - 330
Target Start/End: Original strand, 30784974 - 30785146
Alignment:
Q  158 ggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcc 257  Q
    ||||||||||| ||||||||||||||| |||||| | || ||||||| |||| |||||   |||||  |||||||||||||||||||  ||||||||| |    
T  30784974 ggtatcctccgcgcgcaactgcggagactaatcccttgaacattgtgagacctaaatggatggcagattctccctaagagttttaacgttgctgcatgtc 30785073  T
Q  258 caagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||  ||||||||||||||| ||  ||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  30785074 caaagctggattcgaacccaagacattgattaagctagaagagactcgttccatctcatctaaatgctcttgg 30785146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 156 - 320
Target Start/End: Original strand, 22187984 - 22188146
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||| ||||||||||||||| |||||| || || ||||||||||||||||  ||||||| ||||||  |||||||||||| ||| || |||    
T  22187984 cgggtatcctccgcgcgcaactgcggagactaatccctctagtattgtgggacccaaataggcggcagactctcc--aagagttttaacgctgttgtatg 22188081  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaa 320  Q
    |||||| |||||||| ||||||  | |||||||||| ||||||||| |||||| |||||||||||    
T  22188082 cccaaggctggattcaaacccaataccttggttaagttagaagagattcgttcaatctcatctaa 22188146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 186 - 329
Target Start/End: Original strand, 18909317 - 18909457
Alignment:
Q  186 taatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttg 285  Q
    |||||| |||||||||||||||  |||||||||||||   ||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| ||||    
T  18909317 taatccctcgagcattgtgggattcaaatgagcggcaaattctccctaagagttttaacactgctgcatacccaaggctggattcgaacctaggaccttg 18909416  T
Q  286 gttaagctagaagagactcgttccatctcatctaaacgctcttg 329  Q
     |||||||||||   || ||||| ||||||||||| ||||||||    
T  18909417 attaagctagaa---acccgttctatctcatctaagcgctcttg 18909457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 175 - 330
Target Start/End: Original strand, 2798320 - 2798474
Alignment:
Q  175 actgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaac 274  Q
    ||||| ||||||||||  | ||||||||| | | ||||||| |||| | ||||||||||| ||||||||| ||||||||||| ||||  |||||||||||    
T  2798320 actgcagagattaatctctagagcattgtagaaaccaaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaac 2798419  T
Q  275 ccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||| | |||||||||||||||||| || |||| ||||||||||||  ||||||||    
T  2798420 ccagaaccttggttaagctagaagaaac-cgtttcatctcatctaactgctcttgg 2798474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 221 - 330
Target Start/End: Original strand, 28023494 - 28023603
Alignment:
Q  221 caggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaa 320  Q
    |||||||||||||| |||||||||||| ||  ||||| ||| |||||||||||| |||||  |||||||||||||||||||  |||||||||||||||||    
T  28023494 caggctctccctaaaagttttaacactactatatgcctaaggctggattcgaactcaggacattggttaagctagaagagatccgttccatctcatctaa 28023593  T
Q  321 acgctcttgg 330  Q
     |||||||||    
T  28023594 gcgctcttgg 28023603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 175 - 330
Target Start/End: Original strand, 2804487 - 2804641
Alignment:
Q  175 actgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaac 274  Q
    ||||| ||||||||||  | ||||||||| | | ||||||| |||| | ||||||||||| ||||||||| ||||||||||| ||||  |||||||||||    
T  2804487 actgcagagattaatctctagagcattgtagaaaccaaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaac 2804586  T
Q  275 ccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||  | |||||||||||||||||| || |||| ||||||||||||  ||||||||    
T  2804587 ccaaaaccttggttaagctagaagaaac-cgtttcatctcatctaactgctcttgg 2804641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 153 - 274
Target Start/End: Complemental strand, 35774743 - 35774622
Alignment:
Q  153 aatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgc 252  Q
    ||||||||||| |||| | ||||||| |||||||||| ||||||| |||||| ||| |||||| |||||| |||||||||||| ||||||||| || |||    
T  35774743 aatcgggtatcttccgcgtgcaactgaggagattaattcatcgagtattgtgagactcaaatgtgcggcaagctctccctaagtgttttaacattgttgc 35774644  T
Q  253 atgcccaagactggattcgaac 274  Q
    ||| ||||| ||  ||||||||    
T  35774643 atgtccaaggctaaattcgaac 35774622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 159 - 323
Target Start/End: Complemental strand, 12682787 - 12682623
Alignment:
Q  159 gtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgccc 258  Q
    |||||||||| ||||||||||| ||| |||| | ||||  || ||||||  ||| ||| || || | |||||| ||||||||||||  || ||||||| |    
T  12682787 gtatcctccgcgcgcaactgcgaagactaattcctcgaatatggtgggattcaattgaacgacaagttctcccgaagagttttaacgttgttgcatgctc 12682688  T
Q  259 aagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacg 323  Q
    ||| |||||||||||| ||| |  ||| ||||||||||||||||||||| |||||||| ||||||    
T  12682687 aaggctggattcgaactcagaacattgcttaagctagaagagactcgtttcatctcatttaaacg 12682623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 36213033 - 36212962
Alignment:
Q  174 aactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaaca 245  Q
    |||||||||||  ||||| ||||||||||||||||| ||||| ||||||  |||||||||||||||||||||    
T  36213033 aactgcggagaccaatccctcgagcattgtgggacctaaatgggcggcaaactctccctaagagttttaaca 36212962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 25983820 - 25983742
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaa 234  Q
    ||||||||||||||| ||||||||||||| |||||  |||| |||| |||||| |||||| |||||| |||||||||||    
T  25983820 cgggtatcctccgtgtgcaactgcggagactaatcactcgaacattatgggactcaaatgggcggcaagctctccctaa 25983742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 328
Target Start/End: Original strand, 41446654 - 41446810
Alignment:
Q  172 gcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactgga-ttc 270  Q
    ||||| ||||||| |||||  |||||  ||||||||||||||||||||| |  |||||  |||||||||||||| | ||||||  |||| ||| || |||    
T  41446654 gcaacagcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctctgtaagagttttaacattactgcatatccaa-acttgagttc 41446752  T
Q  271 gaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctctt 328  Q
    ||| || || | |||||| ||||||||||||||| | | ||||||| |||||||||||    
T  41446753 gaatccgggtttttggttgagctagaagagactcatgcaatctcatataaacgctctt 41446810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 373746 - 373808
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaat 214  Q
    |||| ||||||||||||||||||||||||||||||||||| | || ||||||  |||||||||    
T  373746 aaattgggtatcctccgtgcgcaactgcggagattaatcccttgaacattgtatgacccaaat 373808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 320
Target Start/End: Original strand, 3525909 - 3526003
Alignment:
Q  225 ctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaa 320  Q
    |||||||||| |||||||||| || |||||| | |||| |||||||||| | || ||||||||||| |||||||||||  ||  ||||||||||||    
T  3525909 ctctccctaaaagttttaacaatgttgcatgtctaagagtggattcgaa-ctagaatcttggttaaactagaagagacatgtgtcatctcatctaa 3526003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 330
Target Start/End: Original strand, 10795348 - 10795476
Alignment:
Q  200 ttgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaaga 299  Q
    |||||||||||||||| ||||||   ||||| | ||||||||||  ||||| |||||| ||| ||||||| ||||  |||| |||||||||||  |||||    
T  10795348 ttgtgggacccaaatgggcggcacattctcctttagagttttaatgctgcttcatgcctaaggctggatttgaacttaggaccttggttaagc--gaaga 10795445  T
Q  300 gactcgttccatctcatctaaacgctcttgg 330  Q
    ||  |||  |||||||||||| || ||||||    
T  10795446 gatccgtatcatctcatctaagcgttcttgg 10795476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 290
Target Start/End: Original strand, 12336053 - 12336148
Alignment:
Q  195 gagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaa 290  Q
    ||||||||||||||| |||||| | ||| || |||  |||||||||||||||| ||||||||||||   || |||| || |||||| |||||||||    
T  12336053 gagcattgtgggaccaaaatgaacagcaagccctcattaagagttttaacactactgcatgcccaatgttgaattcaaatccaggaccttggttaa 12336148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 322
Target Start/End: Complemental strand, 23422801 - 23422711
Alignment:
Q  232 taagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaac 322  Q
    |||||||||||||  |||||||||||||| ||| |||| || | || || |||||||||||||||| |||||||    |||||||||||||    
T  23422801 taagagttttaactttgctgcatgcccaaaactagatttgatctcaagaccttggttaagctagaaaagactcgcgttatctcatctaaac 23422711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 22402114 - 22402074
Alignment:
Q  164 ctccgtgcgcaactgcggagattaatccatcgagcattgtg 204  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  22402114 ctccatgcgcaactgcggagattaatccctcgagcattgtg 22402074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 29553693 - 29553606
Alignment:
Q  157 gggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaac 244  Q
    |||||||||||  || ||||||| |||| |||||  | ||||||| |||||||||||||  || ||  ||||||||||||||||||||    
T  29553693 gggtatcctccacgcacaactgcagagactaatctcttgagcattctgggacccaaatggacgacaaactctccctaagagttttaac 29553606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 3741205 - 3741108
Alignment:
Q  233 aagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    ||||||||||||  |||| |||  | ||||||| |||| ||| || || | ||||||||||||||||||| |    ||||||||||||||||||||||    
T  3741205 aagagttttaacgttgcttcatttctaagactgaattcaaactcacgaccatggttaagctagaagagacacacgacatctcatctaaacgctcttgg 3741108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 26607229 - 26607298
Alignment:
Q  264 tggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttggata 333  Q
    ||||||||||| || ||  ||||||||| ||||| ||||| ||  |||||||| ||||||||||||||||    
T  26607229 tggattcgaacacatgactttggttaagttagaatagacttgtgtcatctcatttaaacgctcttggata 26607298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 15386108 - 15386176
Alignment:
Q  177 tgcggagattaatccatcgag-cattgtgggacccaaatgagcggcaggctctccctaagagttttaac 244  Q
    |||||||| |||||||||||| ||||||||||  |||||||| ||||  |||| ||||||| |||||||    
T  15386108 tgcggagactaatccatcgagacattgtgggattcaaatgagtggcaaactcttcctaagaattttaac 15386176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 29783243 - 29783195
Alignment:
Q  263 ctggattcgaacccaggatcttggttaagctagaagagactcgttccat 311  Q
    |||||||||||||||  |||||| ||||| |||||||||||||| ||||    
T  29783243 ctggattcgaacccataatcttgattaagatagaagagactcgtgccat 29783195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 156 - 310
Target Start/End: Complemental strand, 26486 - 26332
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||| ||||||||||||||| |||||  |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26486 cgggtatcctccgcgcgcaactgcggagactaatctctcgaacattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatg 26387  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttcca 310  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  26386 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttcca 26332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 7e-56; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 160 - 330
Target Start/End: Original strand, 30995955 - 30996125
Alignment:
Q  160 tatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgccca 259  Q
    ||||||||| ||||||||||||||| |||||| ||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||| ||||||||||    
T  30995955 tatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccagatgggcggcagactctccctaagagttttaacgctgttgcatgccca 30996054  T
Q  260 agactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    ||   |||||||||||||||| |||||||||| |||||||||| ||||||||||||||||| |||||||||    
T  30996055 aggtcggattcgaacccaggaccttggttaagatagaagagacccgttccatctcatctaagcgctcttgg 30996125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 152 - 330
Target Start/End: Original strand, 48204293 - 48204471
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||||||||||||||| ||||||||||||| | |||||| | ||||||||||| |||||||||  || || |||||||||||| ||||||||  |||||    
T  48204293 aaatcgggtatcctccgcgcgcaactgcggaaactaatcccttgagcattgtggaacccaaatggacgacaagctctccctaagggttttaacgttgctg 48204392  T
Q  252 catgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | |||||||    
T  48204393 catgcccaaggctggattcgaacccaagaccttggttaagctagaagagactcgttccatctcatctaagcactcttgg 48204471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 156 - 330
Target Start/End: Complemental strand, 25224854 - 25224680
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||| | ||||||||||||| |||||| | ||||||||||||||| ||||| |||||| | ||||| ||||||||||||| |||||||||     
T  25224854 cgggtatcctccgcgtgcaactgcggagactaatcccttgagcattgtgggacctaaatgggcggcaagttctccttaagagttttaacgctgctgcatt 25224755  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||| |||| |||||||||||| |||||||||    
T  25224754 cccaaaacttgattcgaacccaggaccttggttaagctagaagagacccgtttcatctcatctaagcgctcttgg 25224680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 160 - 330
Target Start/End: Complemental strand, 27763872 - 27763704
Alignment:
Q  160 tatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgccca 259  Q
    ||||||| | ||||||||||||||| |||||| |||||||||||||||| ||||||  |||||| |||||||||||||||||||||||| || |||||||    
T  27763872 tatcctctgcgcgcaactgcggagactaatccctcgagcattgtgggactcaaatggacggcagactctccctaagagttttaacactgttgtatgccca 27763773  T
Q  260 agactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    || |||||||||||||||||| ||||||||||||||  ||||| ||||| ||||||||||| |||||||||    
T  27763772 aggctggattcgaacccaggaccttggttaagctag--gagacccgttctatctcatctaagcgctcttgg 27763704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 152 - 333
Target Start/End: Complemental strand, 38331287 - 38331106
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||||||||||||||| | ||||||||||||| |||||| || | |||||||||||||||||| |||||| |||||| |||||||||||||| ||||||    
T  38331287 aaatcgggtatcctccgcgtgcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaagctctctctaagagttttaacgctgctg 38331188  T
Q  252 catgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttggata 333  Q
    ||||| |||   ||||||| ||| |||||  ||||||||| |||||||||| || |||||||||||||| ||||||||||||    
T  38331187 catgctcaaagttggattcaaactcaggacattggttaagttagaagagacccgatccatctcatctaagcgctcttggata 38331106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 152 - 329
Target Start/End: Complemental strand, 40294771 - 40294594
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||||||||||||  ||||||||||||||||| |||||| ||||| |||||||||  ||||||||||||| ||| |||||||||||||||||| || ||    
T  40294771 aaatcgggtatcctttgtgcgcaactgcggagactaatccttcgagtattgtgggattcaaatgagcggcaagctttccctaagagttttaacattgttg 40294672  T
Q  252 catgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttg 329  Q
    |||  ||||| |||||||||||| ||||| |||| ||||| |||| |||||||||  |||||||||||||| ||||||    
T  40294671 catatccaaggctggattcgaactcaggaccttgattaaggtagaggagactcgtgtcatctcatctaaacactcttg 40294594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 157 - 270
Target Start/End: Complemental strand, 20861402 - 20861289
Alignment:
Q  157 gggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgc 256  Q
    |||||||||||| || |||||||||||| |||||| ||||||||| ||| ||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  20861402 gggtatcctccgcgcacaactgcggagactaatccctcgagcattatggaacccaaatgggcggcaggctctccctaagagttttaacgctgctgcatgc 20861303  T
Q  257 ccaagactggattc 270  Q
    ||||  ||||||||    
T  20861302 ccaatgctggattc 20861289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 174 - 330
Target Start/End: Complemental strand, 14352694 - 14352535
Alignment:
Q  174 aactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgc----ccaagactggatt 269  Q
    ||||||||||| |||||| ||||| |||| || | |||||||  || || ||||||| |||||||||||||||||||||||||    ||||| |||||||    
T  14352694 aactgcggagactaatccctcgagtattg-ggtatccaaatggacgacaagctctccgtaagagttttaacactgctgcatgcatgtccaaggctggatt 14352596  T
Q  270 cgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||||| |  |||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  14352595 cgaaccgaatatcttggttaagctagaagagacttgttccatctcatctaagcgctcttgg 14352535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 329
Target Start/End: Complemental strand, 15283230 - 15283057
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||||||| ||||||||| |||| |  | ||| |||||  ||||||||||||||||||||||| ||||||  || ||| |||||||||||| | |||||    
T  15283230 aaatcgggtctcctccgtgggcaattatgaagactaatctctcgagcattgtgggacccaaatgggcggcaatctttccataagagttttaaga-tgctg 15283132  T
Q  252 catgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttg 329  Q
    |||||||| ||||||||||||||||   | ||| |||||| ||||||||||||||  |||||||||||||||||||||    
T  15283131 catgcccatgactggattcgaaccc---accttagttaagttagaagagactcgtatcatctcatctaaacgctcttg 15283057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 207 - 330
Target Start/End: Complemental strand, 38088739 - 38088616
Alignment:
Q  207 acccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgt 306  Q
    ||||||||  |||||| | ||||||||||||||||||| || ||||||||||||  |||||||||||||  | | ||||||||||||||||||||| |||    
T  38088739 acccaaataggcggcaagttctccctaagagttttaacgctactgcatgcccaaagctggattcgaacctggaaccttggttaagctagaagagacccgt 38088640  T
Q  307 tccatctcatctaaacgctcttgg 330  Q
    | |||||||||||| |||||||||    
T  38088639 ttcatctcatctaagcgctcttgg 38088616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 152 - 274
Target Start/End: Complemental strand, 55123256 - 55123134
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||| ||||||||||| ||||||||||| ||| |||||| |||||||||||| |||||||||| |  ||| ||||||||||||| ||||||| ||||||    
T  55123256 aaatcaggtatcctccgcgcgcaactgcgaagactaatccctcgagcattgtgagacccaaatgggtagcaagctctccctaagaattttaacgctgctg 55123157  T
Q  252 catgcccaagactggattcgaac 274  Q
    |||  ||||| ||||||||||||    
T  55123156 catttccaaggctggattcgaac 55123134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 153 - 309
Target Start/End: Original strand, 48210943 - 48211099
Alignment:
Q  153 aatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgc 252  Q
    ||||||||||| |||| | |||||||||||||| ||| | ||||| ||||||||||| ||||   ||||| ||||||| |||||||||||||  ||||||    
T  48210943 aatcgggtatcttccgcgtgcaactgcggagatcaattcctcgagtattgtgggacctaaatagacggcaagctctccataagagttttaacgttgctgc 48211042  T
Q  253 atgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttcc 309  Q
    |||| |||| ||||||||||||| |  | |||| ||||| |||||||||| ||||||    
T  48211043 atgctcaaggctggattcgaaccaaaaaccttgattaagttagaagagacccgttcc 48211099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 152 - 288
Target Start/End: Complemental strand, 39950371 - 39950235
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    |||| ||||||||||||   ||||||||||||| |||||| ||||||||||| ||| |||||||| || |||  ||||||||| | ||||||| ||||||    
T  39950371 aaattgggtatcctccgcatgcaactgcggagactaatccttcgagcattgtcggatccaaatgaacgacagattctccctaaaaattttaacgctgctg 39950272  T
Q  252 catgcccaagactggattcgaacccaggatcttggtt 288  Q
    |||| |||| ||||||||| |||||| || |||||||    
T  39950271 catgtccaaaactggattctaacccaagaccttggtt 39950235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 152 - 273
Target Start/End: Complemental strand, 1642765 - 1642644
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||||| ||||||||| ||||||||||||| | |||||| || || |||||||||||||||||  ||| || |||||||||| ||||||||||| ||||    
T  1642765 aaatcggatatcctccgcgcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacggtagactctccctaaaagttttaacacggctg 1642666  T
Q  252 catgcccaagactggattcgaa 273  Q
    ||||  |||| || ||||||||    
T  1642665 catgttcaaggctagattcgaa 1642644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 333
Target Start/End: Complemental strand, 22288390 - 22288213
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||| || ||||||| |||| |||| | | ||| ||||||  || ||||||  || || | |||||||||||||||||||| || ||||||    
T  22288390 cgggtatcctccgcgcacaactgcagagactaattccttgagtattgtgtaactcaaatggacgacaagttctccctaagagttttaacattgttgcatg 22288291  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttggata 333  Q
      |||| ||| |||||||| |||||  ||||||||| ||||||||| || |  |||||||||||| |||| |||||||    
T  22288290 ttcaaggctgaattcgaactcaggactttggttaagttagaagagattcatgtcatctcatctaagcgcttttggata 22288213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 219 - 329
Target Start/End: Complemental strand, 42514698 - 42514586
Alignment:
Q  219 ggcaggctctccctaagagttttaacac--tgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcat 316  Q
    |||| ||||||||||||||||||||| |  || |||||||||||   |||||||||||||| ||  || ||||||||||||||||| |||| ||||||||    
T  42514698 ggcaagctctccctaagagttttaacgcgctgatgcatgcccaaagttggattcgaacccaagactttagttaagctagaagagacacgtttcatctcat 42514599  T
Q  317 ctaaacgctcttg 329  Q
    |||| ||||||||    
T  42514598 ctaagcgctcttg 42514586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 8757499 - 8757431
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcagg 224  Q
    ||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||  ||||||||    
T  8757499 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaataggcggcagg 8757431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 333
Target Start/End: Original strand, 46604657 - 46604723
Alignment:
Q  267 attcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttggata 333  Q
    |||||||||||| | |||||||||| || ||||||||||||||||||||||||| ||||||||||||    
T  46604657 attcgaacccagaaccttggttaagttataagagactcgttccatctcatctaagcgctcttggata 46604723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 280
Target Start/End: Complemental strand, 11767269 - 11767141
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||||||||||||||  ||| || |||| ||| |||||| || |  |||||||||| |||||| |||||| || ||  ||||||||||||| | || ||    
T  11767269 aaatcgggtatcctccacgcgtaattgcgaagactaatccttcaaatattgtgggactcaaatgggcggcaagcacttgctaagagttttaatattgttg 11767170  T
Q  252 catgcccaagactggattcgaacccagga 280  Q
    ||||||||||  | |||||||||||||||    
T  11767169 catgcccaaggatagattcgaacccagga 11767141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 153 - 277
Target Start/End: Original strand, 43621294 - 43621420
Alignment:
Q  153 aatcgggtatcctccgtgcgcaactgcggagattaatccatcgagca-ttgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    |||||||||||||| | |||||||| | |||| |||||| ||||||| ||||| |||  ||||| | |||| ||||||||||| |||||||||  |||||    
T  43621294 aatcgggtatcctctgcgcgcaactacagagactaatccctcgagcatttgtgagacttaaatgggaggcaagctctccctaaaagttttaacgttgctg 43621393  T
Q  252 catgccc-aagactggattcgaaccca 277  Q
    ||| ||| |||  ||||||||||||||    
T  43621394 catacccaaagtttggattcgaaccca 43621420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 22755725 - 22755653
Alignment:
Q  230 cctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagac 302  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||| || |  |||||||| |||||| ||||    
T  22755725 cctaagagttttaatgctgctgcatgcccaaggctggattcgaacctagtactttggttaacctagaatagac 22755653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 290
Target Start/End: Original strand, 21223479 - 21223574
Alignment:
Q  195 gagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaa 290  Q
    ||||||||||||| | ||||  ||| || ||||||||||| | |||||||||| ||||||| | ||||||| ||| ||| |||| |||||||||||    
T  21223479 gagcattgtgggatctaaataggcgacaagctctccctaaaaattttaacactactgcatgtctaagactgaatttgaatccagaatcttggttaa 21223574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 275
Target Start/End: Complemental strand, 15446127 - 15446028
Alignment:
Q  180 ggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgc----atgcccaagactggattcgaacc 275  Q
    ||||| |||||| |||||||||||| ||||||||||  |||||  |||||| || || | |||||||||||||    ||||||||| |||||||||||||    
T  15446127 ggagactaatccgtcgagcattgtgagacccaaatggacggcaaactctccatacgaatattaacactgctgcacgaatgcccaaggctggattcgaacc 15446028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 316
Target Start/End: Original strand, 28967243 - 28967328
Alignment:
Q  231 ctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcat 316  Q
    |||||||||||| || |||||||| | |||| ||  |||||||| || || |||||||||| ||||||||||||||  ||||||||    
T  28967243 ctaagagttttagcattgctgcatacacaaggctcaattcgaacacatgaccttggttaagttagaagagactcgtgtcatctcat 28967328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 38349770 - 38349725
Alignment:
Q  287 ttaagctagaagagactcgttccatctcatctaaacgctcttggat 332  Q
    |||||||||||||||||||   ||||||||||||||||||||||||    
T  38349770 ttaagctagaagagactcgagtcatctcatctaaacgctcttggat 38349725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 25739243 - 25739155
Alignment:
Q  156 cgggtatcctccgtgcgcaact-gcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaa 243  Q
    |||||||||||||  ||||||| ||||||| ||||  ||||||  || ||||||||||||| |||| |  |||||||||||||||||||    
T  25739243 cgggtatcctccgcacgcaacttgcggagactaatttatcgagtcttatgggacccaaatgggcggaaaactctccctaagagttttaa 25739155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 40318435 - 40318482
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgt 203  Q
    ||||||||||||| ||||||||||||||| |||||| |||| ||||||    
T  40318435 cgggtatcctccgcgcgcaactgcggagactaatccctcgaacattgt 40318482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 44941255 - 44941316
Alignment:
Q  160 tatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggca 222  Q
    ||||||||| ||||||||||||||| |||||| ||||||||  ||||| ||||||| ||||||    
T  44941255 tatcctccgcgcgcaactgcggagactaatcc-tcgagcataatgggatccaaatgggcggca 44941316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 333
Target Start/End: Complemental strand, 20711877 - 20711744
Alignment:
Q  200 ttgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaaga 299  Q
    |||||| || ||||||||| |||  ||||| |||  | ||||||| || ||| ||||||||| || | ||| ||  ||||| ||||||||||||| ||||    
T  20711877 ttgtggaactcaaatgagcagcaaactctcactacaaattttaacgctactgtatgcccaaggcttgtttcaaattcaggaccttggttaagctacaaga 20711778  T
Q  300 gactcgttccatctcatctaaacgctcttggata 333  Q
    ||| |||   || |||||| ||||||||||||||    
T  20711777 gacccgtgttatttcatctgaacgctcttggata 20711744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 20786905 - 20786950
Alignment:
Q  287 ttaagctagaagagactcgttccatctcatctaaacgctcttggat 332  Q
    ||||||||||||||||||||   |||||||||| ||||||||||||    
T  20786905 ttaagctagaagagactcgtgtgatctcatctacacgctcttggat 20786950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 20616145 - 20616189
Alignment:
Q  234 agagttttaacactgctgcatgcccaagactggattcgaacccag 278  Q
    ||||||| ||| |||||||||| ||||||||||||||||| ||||    
T  20616145 agagtttcaacgctgctgcatgtccaagactggattcgaatccag 20616189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 21742513 - 21742557
Alignment:
Q  247 tgctgcatgcccaagactggattcgaacccaggatcttggttaag 291  Q
    |||| |||| ||||||||| |||||||||||| ||||||||||||    
T  21742513 tgctacatgtccaagactgaattcgaacccagaatcttggttaag 21742557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 305
Target Start/End: Original strand, 50518609 - 50518689
Alignment:
Q  225 ctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcg 305  Q
    ||||| |||||||||| |||  || |||||| ||||||||| |||||||| || ||  || |||||| |||||||||||||    
T  50518609 ctctctctaagagtttcaacgttgttgcatgtccaagactgaattcgaacacatgacattagttaagttagaagagactcg 50518689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 158 - 335
Target Start/End: Complemental strand, 21910357 - 21910181
Alignment:
Q  158 ggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcc 257  Q
    ||||||||||| | ||||||||||||| |||||| | ||| ||||||||||| ||||||||||||| ||||| ||||||||||||||  || ||||||||    
T  21910357 ggtatcctccgcgtgcaactgcggagactaatccct-gagtattgtgggacctaaatgagcggcagactctctctaagagttttaacgatgttgcatgcc 21910259  T
Q  258 caagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttggataca 335  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  21910258 caaggctggattcgaacccaggatcttggttaagctagaagagacttgtttcatctcatctaaacgctcttgggtaca 21910181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 156 - 320
Target Start/End: Complemental strand, 12411303 - 12411139
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||| ||| ||||||||| ||||| |||||| || |||||||||||||  ||||| ||||||| |||| ||||||||||||||| ||||||||||    
T  12411303 cgggtatcccccgcgcgcaactgtggagactaatccctcaagcattgtgggacttaaatgggcggcagactcttcctaagagttttaacgctgctgcatg 12411204  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaa 320  Q
    |||||| |||||||||||| ||||| |||||||||| ||||||||||  ||||||||||||||||    
T  12411203 cccaaggctggattcgaactcaggaccttggttaagttagaagagacctgttccatctcatctaa 12411139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 12836883 - 12837005
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||| ||||||||| ||||| |||||| || |||||||||||||||||||| |||||  ||||||||||||||||||||| ||||||||||    
T  12836883 cgggtatcctccgcgcgcaactggggagactaatccctcaagcattgtgggacccaaatgggcggcgagctctccctaagagttttaacgctgctgcatg 12836982  T
Q  256 cccaagactggattcgaacccag 278  Q
    || ||| ||||||||||||||||    
T  12836983 cctaaggctggattcgaacccag 12837005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 152 - 330
Target Start/End: Complemental strand, 31412281 - 31412104
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||||| ||||||||||||||||||| ||||| ||||   ||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||    
T  31412281 aaatcggatatcctccgtgcgcaactgtggagactaatttctcgagcattgtggaacccaaatgggcggcagactctccctaagagttttaacactgctg 31412182  T
Q  252 catgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    || ||||||  ||| ||||| | ||| || ||| ||||| |||  |||||| |||||||||||||||||  ||||||||    
T  31412181 cacgcccaaagctgaattcg-atccatgaccttagttaaactatgagagacccgttccatctcatctaagtgctcttgg 31412104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 157 - 302
Target Start/End: Complemental strand, 28099397 - 28099252
Alignment:
Q  157 gggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgc 256  Q
    ||||||||||||  |||||||||||||| |||||| ||||||||| ||| || ||||||  || ||   ||||||||| |||||||||||||||||||||    
T  28099397 gggtatcctccgctcgcaactgcggagactaatccctcgagcattatggaactcaaatggacgacaaattctccctaaaagttttaacactgctgcatgc 28099298  T
Q  257 ccaagactggattcgaacccaggatcttggttaagctagaagagac 302  Q
    ||||| |||||||||||||||||| ||| |||||| ||||||||||    
T  28099297 ccaaggctggattcgaacccaggaccttagttaaggtagaagagac 28099252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 186 - 329
Target Start/End: Complemental strand, 423780 - 423637
Alignment:
Q  186 taatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttg 285  Q
    |||||| |||||||||||||||| ||||||  ||||||  | || |||||||||||||| |||| ||||||||||| |||||||| ||||||  | ||||    
T  423780 taatccctcgagcattgtgggactcaaatggacggcagtttatctctaagagttttaacgctgcagcatgcccaaggctggattcaaacccaaaaccttg 423681  T
Q  286 gttaagctagaagagactcgttccatctcatctaaacgctcttg 329  Q
    ||||| ||||||||||   |||||||||||||||| ||||||||    
T  423680 gttaaactagaagagatctgttccatctcatctaagcgctcttg 423637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 173 - 323
Target Start/End: Original strand, 21028982 - 21029136
Alignment:
Q  173 caactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgc------atgcccaagactgg 266  Q
    |||||||||||| |||||| | |||| |||||| ||||||||| ||||||  |||||  ||||||||||||| |||||||      ||||||||| ||||    
T  21028982 caactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaaactctc--taagagttttaacgctgctgcatctgcatgcccaaggctgg 21029079  T
Q  267 attcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacg 323  Q
    ||||||||||| || ||||||||||||||||||||| ||| ||||||||| ||||||    
T  21029080 attcgaacccaagaccttggttaagctagaagagacccgtgccatctcatataaacg 21029136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 152 - 329
Target Start/End: Complemental strand, 278550 - 278374
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||||||||||||||||| ||||||| |  || |||||| | |||  |||||||||| |||||  |||||  |||||| ||||||||||||   || ||    
T  278550 aaatcgggtatcctccgtgtgcaactgtgacgactaatcccttgagttttgtgggacctaaatggacggcaaactctccataagagttttaatg-tgttg 278452  T
Q  252 catgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttg 329  Q
    |||||||||  |||||||| ||| || || ||| |||||||||||||||||||||  |||||||||||||||||||||    
T  278451 catgcccaaagctggattcaaactcaagaccttagttaagctagaagagactcgtgtcatctcatctaaacgctcttg 278374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 157 - 334
Target Start/End: Original strand, 15614560 - 15614737
Alignment:
Q  157 gggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgc 256  Q
    |||||||||||   |||||||| | ||| |||| | | |||||||||||||| |||||  | || | | ||| || || |||||||||  |||| ||||     
T  15614560 gggtatcctccacacgcaactgtgaagactaattcctagagcattgtgggactcaaataggtggtaagttcttccgaaaagttttaacgttgctacatgt 15614659  T
Q  257 ccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttggatac 334  Q
    ||||||||| ||||||||||| ||  ||||||||| |||||||||||||||||||||||| ||| |||||||||||||    
T  15614660 ccaagactgaattcgaacccatgacattggttaagttagaagagactcgttccatctcatataagcgctcttggatac 15614737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 25084121 - 25084025
Alignment:
Q  224 gctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaa 320  Q
    |||||||||||||||||||||| ||||||||| ||||||||| |||||||| || ||  ||| ||||||||||||||||| ||  ||||||||||||    
T  25084121 gctctccctaagagttttaacattgctgcatgtccaagactgaattcgaactcaagactttgattaagctagaagagacttgtgtcatctcatctaa 25084025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 158 - 333
Target Start/End: Original strand, 31107481 - 31107656
Alignment:
Q  158 ggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcc 257  Q
    ||||||||| | |||||| | | |||| |||||  ||||  |||||||||  ||||||  ||| | |||||||| |||||||||||| ||| |||||| |    
T  31107481 ggtatcctctgcgcgcaattacagagactaatctctcgaatattgtgggaatcaaatggacggtaagctctcccaaagagttttaacgctgttgcatgtc 31107580  T
Q  258 caagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttggata 333  Q
    |||  |||||||||||| ||| | ||| |||||| |||||||||| | || ||||||||||||||||| |||||||    
T  31107581 caatgctggattcgaactcagaaccttagttaagttagaagagacccatttcatctcatctaaacgctattggata 31107656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 333
Target Start/End: Complemental strand, 28933277 - 28933116
Alignment:
Q  172 gcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcg 271  Q
    ||||||||||| | || ||  ||||||||||||| ||||||||| ||||||  ||||| |||||| |||||||  || |||||| | ||| ||| ||||     
T  28933277 gcaactgcggatactattcactcgagcattgtggaacccaaatgggcggcaaactctctctaagaattttaacgatgttgcatgtctaaggctgaattca 28933178  T
Q  272 aacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttggata 333  Q
    ||  |||||  || |||||| || ||||||||| ||| ||||||||||||||||||||||||    
T  28933177 aaatcaggactttagttaagataaaagagactcattctatctcatctaaacgctcttggata 28933116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 323
Target Start/End: Complemental strand, 3238058 - 3237908
Alignment:
Q  172 gcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcg 271  Q
    ||||||| ||||| |||||| ||||  ||||||| ||  |||||| ||||| | || ||||||||||||||||| | ||| |||  |||| |||||||||    
T  3238058 gcaactgtggagactaatccctcgattattgtggaacttaaatgaacggcaagttc-ccctaagagttttaacattactgaatgttcaaggctggattcg 3237960  T
Q  272 aacccaggatcttggttaagctagaagagactcgttccatctcatctaaacg 323  Q
    |||| ||||||||||||||  |||||||||| | |  |||||||||||||||    
T  3237959 aaccaaggatcttggttaaattagaagagacacatatcatctcatctaaacg 3237908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 243
Target Start/End: Complemental strand, 1534409 - 1534320
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaa 243  Q
    ||||||| |||||||||  ||||||||||||||| ||| | |||||||||||| ||| |||||| ||| || ||||||||||||||||||||    
T  1534409 aaatcggatatcctccg--cgcaactgcggagatcaattcctcgagcattgtgcgactcaaatgggcgacaagctctccctaagagttttaa 1534320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 27432221 - 27432172
Alignment:
Q  284 tggttaagctagaagagactcgttccatctcatctaaacgctcttggata 333  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||    
T  27432221 tggttaagctagaagagactcgtgtcatctcatctaaacgctcttggata 27432172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 6062182 - 6062110
Alignment:
Q  171 cgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaa 243  Q
    |||||||||| ||| ||||||||||| | |||| |||||||||||| ||||| ||||| ||||||||||||||    
T  6062182 cgcaactgcgaagactaatccatcgaacgttgtaggacccaaatgaacggcaagctcttcctaagagttttaa 6062110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 9536918 - 9536844
Alignment:
Q  160 tatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaa 234  Q
    ||||||||| ||||||||||||||| |||||| ||||||||||||| | | |||||  ||| |||||||||||||    
T  9536918 tatcctccgagcgcaactgcggagactaatccctcgagcattgtggaatctaaatggacggtaggctctccctaa 9536844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 3660645 - 3660732
Alignment:
Q  167 cgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    |||| ||||||||||||| || |||||| ||| |||||| |  |||||||||| ||  ||||| |||||||||||||||||||||||||    
T  3660645 cgtgtgcaactgcggagacta-tccatcaagctttgtggaattcaaatgagcgacaaactctctctaagagttttaacactgctgcatg 3660732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 21028845 - 21028924
Alignment:
Q  173 caactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcat 254  Q
    |||||||||||| |||||| | |||| |||||| ||||||||| ||||||  ||||  |||||||||||||| |||||||||    
T  21028845 caactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaaactct--ctaagagttttaacgctgctgcat 21028924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 333
Target Start/End: Original strand, 26477754 - 26477862
Alignment:
Q  225 ctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgc 324  Q
    |||||||||||| |||||||  ||||||||  || || |||||||| ||  || |||||||||||||||| || |||  |||  |||||||| ||| |||    
T  26477754 ctctccctaagaattttaacgttgctgcatttccgaggctggattcaaattcaagatcttggttaagctaaaatagatccgtgtcatctcatttaagcgc 26477853  T
Q  325 tcttggata 333  Q
    |||||||||    
T  26477854 tcttggata 26477862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 265
Target Start/End: Complemental strand, 29986878 - 29986794
Alignment:
Q  181 gagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactg 265  Q
    ||||||||||  |||||  ||||||||| |||||||||||||  ||||||  ||||||||||||  ||||| ||| |||||||||    
T  29986878 gagattaatctctcgagttttgtgggactcaaatgagcggcaaactctcctaaagagttttaacgttgctgtatgaccaagactg 29986794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 330
Target Start/End: Complemental strand, 35224651 - 35224552
Alignment:
Q  228 tccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctct 327  Q
    ||||| |||||||||||  ||||||| |||||||||| |||||||| | || | ||||||||||    ||||||| ||||||||||||| ||| || |||    
T  35224651 tccctgagagttttaacgttgctgcacgcccaagactagattcgaatctagaaccttggttaag---aaagagacccgttccatctcatttaagcgttct 35224555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 333
Target Start/End: Complemental strand, 33793048 - 33792949
Alignment:
Q  234 agagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttggata 333  Q
    |||||||||||  || ||||||| |||| ||| ||| |||| |||||||||| |||||||| ||||||||  |  |||||||| ||| ||||||| ||||    
T  33793048 agagttttaacgttgttgcatgcgcaaggctgaatttgaactcaggatcttgattaagctaaaagagacttttgtcatctcatttaagcgctcttagata 33792949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 27735557 - 27735469
Alignment:
Q  231 ctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaa 320  Q
    |||||||||||||||| ||| |||| |||||  || |||||||| ||| |  |||||||||||| |||||||  || |||||||||||||    
T  27735557 ctaagagttttaacaccgctccatgtccaaggttgtattcgaactcag-acattggttaagctaaaagagacctgtgccatctcatctaa 27735469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 313
Target Start/End: Complemental strand, 13684526 - 13684442
Alignment:
Q  229 ccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatct 313  Q
    |||||||||||||||| |||||| ||| | || | |||| |||||  || ||  |||||||||||| ||||||||| ||||||||    
T  13684526 ccctaagagttttaacgctgctgtatgtctaaaattggactcgaattcatgactttggttaagctaaaagagactcattccatct 13684442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 152 - 330
Target Start/End: Complemental strand, 16756241 - 16756063
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    |||||| |||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||  || || ||||||||||||||||||||| || |||    
T  16756241 aaatcgagtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgcacgacatgctctccctaagagttttaacgcttctg 16756142  T
Q  252 catgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||||||||  ||| |||| ||||||| | ||||||||||||||||||||  ||||||||||||||||| |||||||||    
T  16756141 catgcccaatgctgaattcaaacccagaaccttggttaagctagaagagatccgttccatctcatctaagcgctcttgg 16756063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 157 - 330
Target Start/End: Complemental strand, 22022274 - 22022101
Alignment:
Q  157 gggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgc 256  Q
    |||||||||||  | ||||||||||||| |||||| ||||  ||||||||||||||||| | |||| | ||||||||||||||||||  |||||||||||    
T  22022274 gggtatcctccacgtgcaactgcggagactaatccctcgaatattgtgggacccaaatgggtggcaagttctccctaagagttttaatgctgctgcatgc 22022175  T
Q  257 ccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    ||||| |||||||||||||||  | ||| |||||||||||||||||  ||||||||||||||||||||||||||    
T  22022174 ccaaggctggattcgaacccacaaccttagttaagctagaagagacctgttccatctcatctaaacgctcttgg 22022101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 156 - 330
Target Start/End: Complemental strand, 28724827 - 28724654
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||| |||||| |||||||| |||||| |||| |||||| |||| ||||||  |||||| |||| ||||||||||||||||||| ||||||    
T  28724827 cgggtatcctccgcgcgcaattgcggagactaatccctcgaacattgtaggactcaaatggacggcagactcttcctaagagttttaacactgttgcatg 28724728  T
Q  256 cccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
      |||| ||| ||||||| |||||| |||  |||||||||||||||||||||||||||||||||| |||||||||    
T  28724727 ttcaaggctgaattcgaatccagga-ctttattaagctagaagagactcgttccatctcatctaagcgctcttgg 28724654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 152 - 300
Target Start/End: Original strand, 18428124 - 18428271
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||||||||||||||| |||||||||| |||| |||||| |||||||||||||| || |||||  | |||| |||||||||| ||||||||||||||||    
T  18428124 aaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtggggcc-aaatggacagcagactctccctaaaagttttaacactgctg 18428222  T
Q  252 catgcccaagactggattcgaacccaggatcttggttaagctagaagag 300  Q
    ||||||||||  |||||||||| |||| | ||||||||||||| |||||    
T  18428223 catgcccaaggttggattcgaatccagaaccttggttaagctacaagag 18428271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 157 - 330
Target Start/End: Original strand, 9780976 - 9781144
Alignment:
Q  157 gggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgc 256  Q
    |||||| ||||| || ||||| |||| | |||||| ||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||    
T  9780976 gggtattctccgcgcccaactacggatactaatccctcgagcattgtgggacccaaatgggcggccgactctccctaagagttttaacgctgctgcatgc 9781075  T
Q  257 ccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    ||||| |||||||||||| || || |||  ||||     ||||||  ||||| |||||||||||||||||||||    
T  9781076 ccaaggctggattcgaactcaagaccttaattaa-----aagagatccgttctatctcatctaaacgctcttgg 9781144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 159 - 326
Target Start/End: Complemental strand, 45806388 - 45806221
Alignment:
Q  159 gtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgccc 258  Q
    |||||||||  ||| |||||| |||| |||||  ||||  |||||| |||  ||||  |||| | |||||||||||||||||||| ||||||||||||||    
T  45806388 gtatcctccacgcgtaactgcagagactaatcattcgaatattgtgagacttaaataggcggtatgctctccctaagagttttaaaactgctgcatgccc 45806289  T
Q  259 aagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctc 326  Q
    ||||||| |||||||| ||||| |||||||||| |||||||||| ||||| ||||||||||| |||||    
T  45806288 aagactgaattcgaactcaggaccttggttaagatagaagagacccgttctatctcatctaagcgctc 45806221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 39547355 - 39547471
Alignment:
Q  161 atcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaa 260  Q
    |||||| | |||||||||||||||||||||| |||| ||||||| |||| ||||  ||||||| ||| ||||||||||||| |||||||||||||| |||    
T  39547355 atcctctgcgcgcaactgcggagattaatccgtcgaacattgtgagacctaaataggcggcagactccccctaagagttttgacactgctgcatgctcaa 39547454  T
Q  261 gactggattcgaaccca 277  Q
    |||||||||||||||||    
T  39547455 gactggattcgaaccca 39547471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 314
Target Start/End: Complemental strand, 12035689 - 12035546
Alignment:
Q  172 gcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagag-ttttaacactgctgcatgcccaagactggattc 270  Q
    |||| ||| |||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| || |||||||| ||| ||||||||    
T  12035689 gcaattgctgagactaatccctcgagcattgtgggacccaaatgggcggcagactctccctaagagtttttaacaatgttgcatgccaaaggctggattc 12035590  T
Q  271 gaacccaggatcttggttaagctagaagagactcgttccatctc 314  Q
    ||||| | ||  |||||||| ||||||||||| | |||||||||    
T  12035589 gaaccaaagactttggttaaactagaagagaccctttccatctc 12035546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 172 - 333
Target Start/End: Complemental strand, 10841157 - 10840995
Alignment:
Q  172 gcaactgcggagattaatccatcgagcattgtgggaccc-aaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattc 270  Q
    ||||||||||| |||||||| || ||||||||||||||| ||||| | |||| | ||||||||||| |||||||  || | |||||||||| ||| |||     
T  10841157 gcaactgcggaaattaatccctcaagcattgtgggaccctaaatgggaggcaagttctccctaagaattttaacgttgttacatgcccaaggctgaattt 10841058  T
Q  271 gaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttggata 333  Q
    |||||||  |||||||||||| ||||||||||  ||| |||||||||||| ||||||||||||    
T  10841057 gaacccaaaatcttggttaagatagaagagacctgtttcatctcatctaagcgctcttggata 10840995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 156 - 289
Target Start/End: Complemental strand, 36806766 - 36806634
Alignment:
Q  156 cgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    ||||||||||||| | |||||||| |||| |||||| ||||||||||||| ||||||||| ||||||| | |||||||||||||||||| || ||| |||    
T  36806766 cgggtatcctccgcgtgcaactgcagagactaatccctcgagcattgtggaacccaaatgggcggcagacactccctaagagttttaacgctactgtatg 36806667  T
Q  256 cccaagactggattcgaacccaggatcttggtta 289  Q
    |||||| ||| |||||||  ||||||||||||||    
T  36806666 cccaaggctgaattcgaa-tcaggatcttggtta 36806634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 42297430 - 42297523
Alignment:
Q  158 ggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||  |||||| |||||||||||||||||||| ||||||    
T  42297430 ggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatggacggcagactctccctaagagttttaacgctgctg 42297523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 15642614 - 15642526
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttt 240  Q
    ||||||||||||||||| ||||||||||||||| |||||  ||||||||||||||||||||||| ||||||  ||||||||||||||||    
T  15642614 aaatcgggtatcctccgcgcgcaactgcggagaataatctctcgagcattgtgggacccaaatgggcggcaaactctccctaagagttt 15642526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 29124825 - 29124733
Alignment:
Q  231 ctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacg 323  Q
    |||||||||||||| |||||||||||||||  |||||||||||| || || | |||||||||||||||||||||||| |||||||||||||||    
T  29124825 ctaagagttttaacgctgctgcatgcccaatgctggattcgaactcatgaccctggttaagctagaagagactcgtttcatctcatctaaacg 29124733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 152 - 330
Target Start/End: Complemental strand, 10750756 - 10750579
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||| ||||||||| | |||||||||   ||| |||||| |||| ||||||| || ||||||| |||||| || | || ||||||||||||| ||| ||    
T  10750756 aaatcaggtatcctctgcgcgcaactgtaaagactaatccctcgaacattgtgcgatccaaatgggcggcaagcgcacc-taagagttttaacgctgatg 10750658  T
Q  252 catgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
     |||||||||| | |||||||||||| || |||||||||  ||||| ||||  ||| |||||||||||| |||||||||    
T  10750657 tatgcccaagattagattcgaacccaagaccttggttaaattagaaaagacatgtttcatctcatctaagcgctcttgg 10750579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 333
Target Start/End: Complemental strand, 52912702 - 52912599
Alignment:
Q  228 tccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctct 327  Q
    ||||| |||||||||||  |||| |||||  ||||||||||||||||||| ||||||||||||||||  |||||| ||||||||||||| |||||||| |    
T  52912702 tccctgagagttttaacgttgctacatgc--aagactggattcgaacccaagatcttggttaagctaatagagacccgttccatctcatttaaacgcttt 52912605  T
Q  328 tggata 333  Q
    ||||||    
T  52912604 tggata 52912599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 158 - 275
Target Start/End: Original strand, 7242795 - 7242912
Alignment:
Q  158 ggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcc 257  Q
    |||||| |||| ||||||||||||||| |||||| ||||| ||| || ||  |||||| | || || ||||||||||||||||||||  ||||||||| |    
T  7242795 ggtatcttccgcgcgcaactgcggagactaatccctcgagtattatgagattcaaatgggaggtagactctccctaagagttttaacgttgctgcatgtc 7242894  T
Q  258 caagactggattcgaacc 275  Q
    ||||||||||||||||||    
T  7242895 caagactggattcgaacc 7242912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 299
Target Start/End: Original strand, 32883625 - 32883699
Alignment:
Q  225 ctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaaga 299  Q
    |||||||||||||||||||| |||||||||| ||||  |||||||||||||||  ||||||||||||||||||||    
T  32883625 ctctccctaagagttttaacgctgctgcatgtccaatgctggattcgaacccaaaatcttggttaagctagaaga 32883699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 10367663 - 10367575
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttt 240  Q
    ||||||||||| || ||  ||||||||||||||||||||| ||||||||||| ||||||||||| |||| || |||||| |||||||||    
T  10367663 aaatcgggtattcttcgcacgcaactgcggagattaatccttcgagcattgttggacccaaatgggcggtagactctccttaagagttt 10367575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 331
Target Start/End: Complemental strand, 36086936 - 36086837
Alignment:
Q  232 taagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgga 331  Q
    ||||||||||||||  | ||||||| ||||||||||||||||| ||||| ||| ||||| ||| ||||||||| |  ||||||||||||||||| |||||    
T  36086936 taagagttttaacatggttgcatgcgcaagactggattcgaactcaggacctttgttaaactaaaagagactcttgtcatctcatctaaacgcttttgga 36086837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 7624955 - 7624859
Alignment:
Q  230 cctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctct 327  Q
    |||| ||||||| | |||| |||||| ||||| ||||||| |||||||  |||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  7624955 cctacgagttttcagactgttgcatgtccaaggctggatttgaacccataatcttggttaagctagaa-agacttgttccatctcatttaaacgctct 7624859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 17600561 - 17600658
Alignment:
Q  233 aagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    ||||||||||||  || ||||||| |||| ||| |||| |||||| || ||||||||||||||||||||| |||  ||||||||||||||||| ||||    
T  17600561 aagagttttaacgatgttgcatgctcaaggctgaattctaacccaagaccttggttaagctagaagagacccgtgtcatctcatctaaacgcttttgg 17600658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 152 - 297
Target Start/End: Complemental strand, 46864250 - 46864105
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctg 251  Q
    ||||| ||||||||  | |||||||||| |||| |||||| |||| |||||||  |||||||||  ||||| | ||||||||||| ||||||| || |||    
T  46864250 aaatcaggtatcctttgcgcgcaactgcagagactaatccctcgaacattgtgaaacccaaatggacggcaagttctccctaagaattttaacgctactg 46864151  T
Q  252 catgcccaagactggattcgaacccaggatcttggttaagctagaa 297  Q
    |||||||||  ||||||| |||||||  |  ||| |||||||||||    
T  46864150 catgcccaaagctggatttgaacccaaaactttgattaagctagaa 46864105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 329
Target Start/End: Complemental strand, 35692591 - 35692467
Alignment:
Q  205 ggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactc 304  Q
    ||||| ||||||||||||  ||||||||||||||||||||   | |||||||||||   ||||||||||| || ||  |||||||| |||||| |||| |    
T  35692591 ggacctaaatgagcggcaaactctccctaagagttttaacgtcgttgcatgcccaatgttggattcgaactcaagacattggttaaactagaaaagaccc 35692492  T
Q  305 gttccatctcatctaaacgctcttg 329  Q
     | ||||||||||||| ||||||||    
T  35692491 atgccatctcatctaagcgctcttg 35692467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 315
Target Start/End: Original strand, 36522259 - 36522381
Alignment:
Q  193 tcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagc 292  Q
    |||||||||||||||| ||||||  |||||  ||||||||||||||||||||  ||||||||| | ||||||| ||||||||  || |  || |||||||    
T  36522259 tcgagcattgtgggactcaaatggacggcaaactctccctaagagttttaaccttgctgcatgtctaagactgtattcgaacttagaaatttagttaagc 36522358  T
Q  293 tagaagagactcgttccatctca 315  Q
    ||||| | |  ||||||||||||    
T  36522359 tagaaaaaatccgttccatctca 36522381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 44913262 - 44913180
Alignment:
Q  158 ggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttt 240  Q
    ||||||||| | ||| |||||| |||| |||||  ||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  44913262 ggtatcctctgcgcgtaactgcagagactaatctctcgagcattgtgggacccagatgggcggcaagctctccctaagagttt 44913180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 330
Target Start/End: Original strand, 25655319 - 25655424
Alignment:
Q  225 ctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgc 324  Q
    ||||| ||||||||||||||  ||||||||||||||   |  |||||||||||| | |||| ||||| ||||||| | | ||||||||||||||||||||    
T  25655319 ctctctctaagagttttaacgttgctgcatgcccaatgttaaattcgaacccagaaccttgattaagttagaagatatttgttccatctcatctaaacgc 25655418  T
Q  325 tcttgg 330  Q
    | ||||    
T  25655419 tattgg 25655424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 280
Target Start/End: Complemental strand, 24801492 - 24801412
Alignment:
Q  200 ttgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccagga 280  Q
    ||||||||| ||||||  ||| |  ||||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||||    
T  24801492 ttgtgggactcaaatggacggtaaactctccctaagagttttaacagtgctgcatgcctaaggctggattcgaaccaagga 24801412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 330
Target Start/End: Complemental strand, 32534235 - 32534064
Alignment:
Q  158 ggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcc 257  Q
    ||||||||| | |||||| |||||||| ||| |  |||||||||||| |||| || || |||| | |||||| ||||||||||||||  || |||||||     
T  32534235 ggtatcctctgcgcgcaattgcggagactaacctctcgagcattgtgagacctaa-tgggcggtaagctctctctaagagttttaacgttgttgcatgct 32534137  T
Q  258 caagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||  ||| ||| ||| |||  | |||||||||||||||||| || |||  ||| ||||||||||| ||||||    
T  32534136 caaagctgaatttgaatccaaaaccttggttaagctagaagaaacccgtgtcatatcatctaaacgatcttgg 32534064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 328
Target Start/End: Complemental strand, 36982441 - 36982338
Alignment:
Q  225 ctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgc 324  Q
    ||||||||||||||||||||  || |||||| | ||| ||| ||||||||||  || ||||||||| |||||||||||  ||  |||||||||||||| |    
T  36982441 ctctccctaagagttttaacgttgttgcatgtctaaggctgaattcgaacccgagaccttggttaaactagaagagacctgtgtcatctcatctaaactc 36982342  T
Q  325 tctt 328  Q
    ||||    
T  36982341 tctt 36982338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 49071736 - 49071665
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcag 223  Q
    ||||||| |||| ||||  |||||||||||||| |||||  |||||||||||||||||||||||| ||||||    
T  49071736 aaatcggatatcttccgcacgcaactgcggagactaatctctcgagcattgtgggacccaaatgaacggcag 49071665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 14500361 - 14500418
Alignment:
Q  273 acccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||||||| ||||||||||||||||||||| ||||||||| ||||||| | |||||||    
T  14500361 acccaggaccttggttaagctagaagagacccgttccatcgcatctaagcactcttgg 14500418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 318
Target Start/End: Original strand, 33059756 - 33059870
Alignment:
Q  200 ttgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaaga 299  Q
    |||||||||||||||| ||||||  |||||| |||||||||||||  |||    ||| ||| ||| |||| ||||||| |||||||||||| ||||||||    
T  33059756 ttgtgggacccaaatgggcggcaaactctccttaagagttttaacgttgc----tgctcaaaactagatttgaacccatgatcttggttaaactagaaga 33059851  T
Q  300 gactcgttccatctcatct 318  Q
     ||  || |||||||||||    
T  33059852 taccagtaccatctcatct 33059870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 21774668 - 21774612
Alignment:
Q  246 ctgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagac 302  Q
    |||||||||| |||||||||||||||||||||  | |||| ||||||||||||||||    
T  21774668 ctgctgcatgtccaagactggattcgaacccaaaaccttgattaagctagaagagac 21774612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 328
Target Start/End: Original strand, 31733685 - 31733849
Alignment:
Q  164 ctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagac 263  Q
    ||||| ||||||||| ||||| |||| |||| ||  |||||  ||||| |||  || ||  |||||||||||||||||||| |||||||||||| ||  |    
T  31733685 ctccgcgcgcaactgtggagactaattcatccagtcttgtgacacccagatggacgacaaactctccctaagagttttaactctgctgcatgcctaatgc 31733784  T
Q  264 tggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctctt 328  Q
    || |||||||||||  |  ||||||||| ||||||| ||  ||   ||||||||||||| |||||    
T  31733785 tgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacactctt 31733849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 320
Target Start/End: Complemental strand, 40019327 - 40019232
Alignment:
Q  225 ctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaa 320  Q
    ||||||| ||||||||||||  ||||||||  ||||| ||| |||||||||||  | |||| ||||| ||||||||||||||  ||| ||||||||    
T  40019327 ctctccccaagagttttaacgttgctgcatatccaaggctgaattcgaacccaaaaccttgattaagttagaagagactcgtatcatttcatctaa 40019232  T

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Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 275
Target Start/End: Original strand, 2732038 - 2732136
Alignment:
Q  177 tgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacc 275  Q
    ||||||||||||||| |||| ||||||||||| ||||||| ||| | ||| ||| ||||| ||||||   || |||||||| || |||| |||||||||    
T  2732038 tgcggagattaatccctcgaacattgtgggactcaaatgaacggtaagctatccgtaagaattttaaggttgttgcatgcctaatactgaattcgaacc 2732136  T

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Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 9066128 - 9066190
Alignment:
Q  247 tgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttcc 309  Q
    |||||||| |||||||||||||||||| |||  |  |||||||| ||||||||||||||||||    
T  9066128 tgctgcatacccaagactggattcgaatccaaaactttggttaaactagaagagactcgttcc 9066190  T

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Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 61161 - 61256
Alignment:
Q  159 gtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatg 255  Q
    |||||||||||| |||||||| ||||||||||| |||| |||| | ||||||||||  | ||||  |||||   |||||||||||| ||||||||||    
T  61161 gtatcctccgtgtgcaactgcagagattaatccctcgaacattat-ggacccaaataggtggcaaactctcttcaagagttttaacgctgctgcatg 61256  T

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Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 329
Target Start/End: Original strand, 21089330 - 21089401
Alignment:
Q  258 caagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttg 329  Q
    |||| ||||| || ||| ||| ||||||||||| |||||||||||| ||  ||||||||||||||| |||||    
T  21089330 caaggctggaatcaaactcagaatcttggttaaactagaagagacttgtgtcatctcatctaaacgttcttg 21089401  T

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Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 332
Target Start/End: Original strand, 10629759 - 10629833
Alignment:
Q  258 caagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttggat 332  Q
    |||||||||||| |||||||  | | |||||||  |||||||||||||  ||||||||||||| |||| ||||||    
T  10629759 caagactggatttgaacccaaaaccgtggttaaagtagaagagactcgcaccatctcatctaagcgctattggat 10629833  T

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Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 301
Target Start/End: Complemental strand, 13546537 - 13546436
Alignment:
Q  200 ttgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaaga 299  Q
    ||||||||  |||||| |||| |  |||||| |||||||||||||| || | ||||   ||||||||||||||||||| ||  || |||||| |||||||    
T  13546537 ttgtgggattcaaatgggcggtaaactctccataagagttttaacattgttacatgtataagactggattcgaacccacgactttagttaagttagaaga 13546438  T
Q  300 ga 301  Q
    ||    
T  13546437 ga 13546436  T

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Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 40701544 - 40701499
Alignment:
Q  287 ttaagctagaagagactcgttccatctcatctaaacgctcttggat 332  Q
    ||||||||||||||||| |   ||||||||||||||||||||||||    
T  40701544 ttaagctagaagagactagagtcatctcatctaaacgctcttggat 40701499  T

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Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 52957484 - 52957419
Alignment:
Q  241 taacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgt 306  Q
    |||| |||||||||||| ||||||| |||| |||||| || ||||||||  ||| |||||||||||    
T  52957484 taacgctgctgcatgcctaagactgaattcaaacccaagaccttggttatactaaaagagactcgt 52957419  T

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Target: scaffold0009 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 32330 - 32421
Alignment:
Q  236 agttttaacactgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctct 327  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||| | |||||| |||||||||||||| |||||||||| ||||||| |||||    
T  32330 agttttaacgctgctgcatacccaagattggattcgaacccagaaccttggtgaagctagaagagacccgttccatcttatctaaatgctct 32421  T

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Target: scaffold0009; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 27212 - 27296
Alignment:
Q  157 gggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagtttt 241  Q
    |||||||||||| ||||||||||| ||| |||||| |||||||| ||| || ||||||| |||||| ||||||||||||||||||    
T  27212 gggtatcctccgcgcgcaactgcgaagactaatccctcgagcatcgtgagatccaaatgggcggcaagctctccctaagagtttt 27296  T

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Target: scaffold0020 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 330
Target Start/End: Complemental strand, 167918 - 167836
Alignment:
Q  246 ctgctgcatgcccaagactggattcgaacccaggatcttggttaagctagaagagactcgttccatctcatctaaacgctcttgg 330  Q
    |||||||||||||||| ||||||| ||||||  || |||| |||||||||||||||| |||| |||||||||||| |||||||||    
T  167918 ctgctgcatgcccaaggctggatttgaaccc--gaccttgattaagctagaagagacccgtttcatctcatctaagcgctcttgg 167836  T

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Target: scaffold0189 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 290
Target Start/End: Complemental strand, 11089 - 10973
Alignment:
Q  174 aactgcggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgcatgcccaagactggattcgaa 273  Q
    ||||| ||||||||||| ||||||  |||||  ||| ||||| ||||||  |||||| |||||||||||||| || ||||||||||| | ||||||||||    
T  11089 aactgtggagattaatctatcgagttttgtgaaacctaaatgggcggcaaactctccgtaagagttttaacattgttgcatgcccaaaaatggattcgaa 10990  T
Q  274 cccaggatcttggttaa 290  Q
    || |||| ||| |||||    
T  10989 cctaggaccttagttaa 10973  T

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Target: scaffold0013 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 29134 - 29198
Alignment:
Q  152 aaatcgggtatcctccgtgcgcaactgcggagattaatccatcgagcattgtgggacccaaatga 216  Q
    ||||||||||||||||| ||||||||| ||||| ||||||  |||||||||||||||||||||||    
T  29134 aaatcgggtatcctccgcgcgcaactgtggagactaatcccacgagcattgtgggacccaaatga 29198  T

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Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 55142 - 55191
Alignment:
Q  284 tggttaagctagaagagactcgttccatctcatctaaacgctcttggata 333  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||    
T  55142 tggttaagctagaagagactcgtgtcatctcatctaaacgctcttggata 55191  T

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Target: scaffold0061 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 36255 - 36207
Alignment:
Q  284 tggttaagctagaagagactcgttccatctcatctaaacgctcttggat 332  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  36255 tggttaagctagaagagactcgtgtcatctcatctaaacgctcttggat 36207  T

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Target: scaffold0017 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 162524 - 162572
Alignment:
Q  284 tggttaagctagaagagactcgttccatctcatctaaacgctcttggat 332  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  162524 tggttaagctagaagagactcgtgtcatctcatctaaacgctcttggat 162572  T

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Target: scaffold0071 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 275
Target Start/End: Original strand, 16065 - 16164
Alignment:
Q  180 ggagattaatccatcgagcattgtgggacccaaatgagcggcaggctctccctaagagttttaacactgctgc----atgcccaagactggattcgaacc 275  Q
    ||||| |||||| |||||||||||| ||||||||||  |||||  |||||| || || | |||||||||||||    ||||||||| |||||||||||||    
T  16065 ggagactaatccgtcgagcattgtgagacccaaatggacggcaaactctccatacgaatattaacactgctgcacgaatgcccaaggctggattcgaacc 16164  T

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