View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16005_high_3 (Length: 399)
Name: NF16005_high_3
Description: NF16005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16005_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 48308822 - 48308654
Alignment:
| Q |
19 |
acaatacctttgaaaagagaccttaccaccgtaaatgtggttgtgcacttcataataaaaagtcacgtatgaattacaagcacatgctaccaagttgttg |
118 |
Q |
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| T |
48308822 |
acaatacctttgaaaagagaccttaccaccgtaaatgtggttgtgcacttcataataaaaagtcacgtatgaattacaagcacatgctaccaagttgttg |
48308723 |
T |
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| Q |
119 |
taacaagaccgtgtcttatcctatcaagaaagaacgtaggagtttggtcgtgaaaacagcttcaactac |
187 |
Q |
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| T |
48308722 |
taacaggaccgtgtcttatcctatcaagaaagaacgtaggagtttggtcgtgaaaacagcttcaactac |
48308654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 228 - 384
Target Start/End: Complemental strand, 48308613 - 48308457
Alignment:
| Q |
228 |
caagtaatgatgagtttggtaaaccttcaagagcaggaggaggagccaaatcacaagtatttttaaattattcaaggtctgagaataattaattcatgtg |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48308613 |
caagtaatgatgagtttggtaaaccttcaagagcaggaggaggagccaaatcacaagtatttttaaattattcaaggtctgagaagaattaattcatgtg |
48308514 |
T |
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| Q |
328 |
tttgataatagtttatagaaataattaatgatctgaagcaatctgttgaggtctgtg |
384 |
Q |
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| T |
48308513 |
tttgataatagtttatagaaataattaatgatctgaagcaatctgttgaggtctgtg |
48308457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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