View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16005_high_6 (Length: 306)
Name: NF16005_high_6
Description: NF16005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16005_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 287
Target Start/End: Original strand, 49002770 - 49003047
Alignment:
| Q |
12 |
atgaaccacgtaaaaaagacaattagttgtataacaataattagaaggcaataatttagtcttttacaatgattaaaaagggactaagttactggcaaac |
111 |
Q |
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| T |
49002770 |
atgaaccacgtaaaaaagacaattagttgtataacaataattaaaaggcaataatttagtcttttacaatgattaaaaagggactaagttacaggcaaac |
49002869 |
T |
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| Q |
112 |
aaactaaattgttttggttaaattttttagaatttaaacatt--nnnnnnnnnnnnngtaaaagaaaatgtttaagctacaacaccattcttgtcaccta |
209 |
Q |
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| T |
49002870 |
aaactaaattgttttggttcaattttttagaatttaaacattgagagagagagagaggtaaaagaaaatgtttaagctacaacaccattcttgtcaccta |
49002969 |
T |
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| Q |
210 |
cacatcttcgctatgttcttgaattggccttaaactctgcccctttgaaaacttgtaggaatgatcttgatgatcccc |
287 |
Q |
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| T |
49002970 |
cacatcttcgctatgttcttgaattggccttaaactctgcccctttgaaaacttgtaggaatgatcatgatgatcccc |
49003047 |
T |
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