View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16005_low_10 (Length: 244)
Name: NF16005_low_10
Description: NF16005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16005_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 41232065 - 41232282
Alignment:
| Q |
18 |
tgcataaactaactcctacctaatattgtgttagcattggaatcatgtggctataa-----ataggaagaaaagcattttattcatcttgcacacagaaa |
112 |
Q |
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| T |
41232065 |
tgcataaactaactcctacctaatattgtgttagcattggaatcatgtggctatactatatataggaagcaaagcattttattcatcttccacacagaaa |
41232164 |
T |
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| Q |
113 |
gaacataagttgtcaataattaatatccttagtannnnnnnctcctcgctctcgtacacattgacatcctgcatgttgctggtggccattgtatttgtct |
212 |
Q |
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| T |
41232165 |
aaacataagttgtccataattaatgtccttagtatttttttctccttgctctcgtacacattgacatcctgcatgttgctggtggccattgtatttgtct |
41232264 |
T |
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| Q |
213 |
ctggattttgaacatttt |
230 |
Q |
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| T |
41232265 |
ctggattttgaacatttt |
41232282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 41212074 - 41212127
Alignment:
| Q |
18 |
tgcataaactaactcctacctaatattgtgttagcattggaatcatgtggctat |
71 |
Q |
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| T |
41212074 |
tgcataaactaccttctacctaacaatgtgttagcattggaatcatgtggctat |
41212127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 41531385 - 41531455
Alignment:
| Q |
161 |
ctctcgtacacatt-gacatcctgcatgttgctggtggccattgtatttgtctctggattttgaacatttt |
230 |
Q |
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| T |
41531385 |
ctctcgttcacatttgacatcttacatgttgttggtgaccattgtatttgtcgctaaattttgaacatttt |
41531455 |
T |
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