View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16005_low_11 (Length: 239)
Name: NF16005_low_11
Description: NF16005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16005_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 13248635 - 13248843
Alignment:
| Q |
17 |
atttgctcctcaacatctacatgtgcaggcacgcgaccataaaaatcgatgtccatttcttattatgagcgtcaaacggttgatgattgatacttctgaa |
116 |
Q |
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| T |
13248635 |
atttgctcctcaacatctacatgtgcaggcacgcgaccataaaaatcgatgtccatttcttattatgagcgtcaaacag---------gatacttctgaa |
13248725 |
T |
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| Q |
117 |
tatccatttcatgaagttnnnnnnncagttagtaattagatttgaagggagtaatctaatccacgtttgagttacaatggagcaatcctgtaaaacatga |
216 |
Q |
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| T |
13248726 |
gatccatttcatgaagttaaaaaaacagttagtaattagatttgaagggagtaatctaatcctcgtttgagttacaatggagcaatcctgtaaaacatga |
13248825 |
T |
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| Q |
217 |
atagtttcctttgcttct |
234 |
Q |
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|||||||| ||||||||| |
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| T |
13248826 |
atagtttcttttgcttct |
13248843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 6652354 - 6652256
Alignment:
| Q |
18 |
tttgctcctcaacatctacatgtgcaggcacgcgaccataaaaatcgatgtccatttcttattatgagcgtcaaacggttgatgattgatacttctgaa |
116 |
Q |
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|||| ||||| ||||| |||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
6652354 |
tttgttcctccacatccacatgtacaagcacgcaaccataaaaatcggtgtccatttcttattatgagcgtcaaaaagttgatgattgatacttttgaa |
6652256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 6652227 - 6652148
Alignment:
| Q |
155 |
gatttgaagggagtaatctaatccacgtttgagttacaatggagcaatcctgtaaaacatgaatagtttcctttgcttct |
234 |
Q |
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|||||||||| | ||| || ||||| ||||||||| |||||||||||||| |||||||||||| ||||| ||||||||| |
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| T |
6652227 |
gatttgaaggaactaaccttatccatgtttgagttgcaatggagcaatccggtaaaacatgaacagtttattttgcttct |
6652148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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