View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16005_low_13 (Length: 206)
Name: NF16005_low_13
Description: NF16005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16005_low_13 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 2460268 - 2460092
Alignment:
| Q |
11 |
agatgaagaaagagcacctaaccttataaatcattttgtatgaaatatttgttcaactgcttctttcaactaagcatctctctttctctttctaccggcc |
110 |
Q |
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| T |
2460268 |
agatgaagaaagagcacctaaccttataaatcattttgtacgaaatatttgttcaactgcttctttcaactaagcatctctctttctctttctaccggcc |
2460169 |
T |
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| Q |
111 |
actggaatcaactatattatgtttatgggttgcctattccttaggacaaacagaaaaaacaaggacagggagtagca |
187 |
Q |
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| T |
2460168 |
actggaatcaactatattatgtttatgggttgcctattcattaggacaaacagaaaaaacaaggacagggagtagca |
2460092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 51 - 188
Target Start/End: Complemental strand, 1010 - 873
Alignment:
| Q |
51 |
tgaaatatttgttcaactgcttctttcaactaagcatctctctttctctttctaccggccactggaatcaactatattatgtttatgggttgcctattcc |
150 |
Q |
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| T |
1010 |
tgaaatatttgttcaactgcttctttcaactaagcatctctctttctctttctaccggccactggaatcaactatattatgtttatgggttgcctattcc |
911 |
T |
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| Q |
151 |
ttaggacaaacagaaaaaacaaggacagggagtagcat |
188 |
Q |
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| T |
910 |
ttcggacaaacagaaaaaacaaggacagggagtagcat |
873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 63 - 188
Target Start/End: Original strand, 14960785 - 14960910
Alignment:
| Q |
63 |
tcaactgcttctttcaactaagcatctctctttctctttctaccggccactggaatcaactatattatgtttatgggttgcctattccttaggacaaaca |
162 |
Q |
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| T |
14960785 |
tcaactgcttctttcaactaagcatctctctttctccttctaccggccactggaatcaactatattatgtttatgggttgcctattccttaggacaaaca |
14960884 |
T |
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| Q |
163 |
gaaaaaacaaggacagggagtagcat |
188 |
Q |
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| T |
14960885 |
gaaaaaagaaggacagggagtagcat |
14960910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 44247468 - 44247431
Alignment:
| Q |
13 |
atgaagaaagagcacctaaccttataaatcattttgta |
50 |
Q |
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| T |
44247468 |
atgaagaaagagcatctaaccttatcaatcattttgta |
44247431 |
T |
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