View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16005_low_2 (Length: 451)
Name: NF16005_low_2
Description: NF16005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16005_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 74 - 444
Target Start/End: Original strand, 34503984 - 34504354
Alignment:
| Q |
74 |
aattcaatagcggttttggaatctcgttttaaggcccnnnnnnntcgtccataaattgtaatagtgcataaatcgcgtggcaactactagcctgcaaaac |
173 |
Q |
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| T |
34503984 |
aattcaatagcggttttggaatctcgttttaaggcccaaaaaaatcgtccatgagt-gtaatagtgcataaatcgcgtggcaactactagcctgcaaaac |
34504082 |
T |
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| Q |
174 |
acaatcatcacagttcaattcgatcaaattaacttagaggacgagtccaacaaatgaatggcacattgttgcaataagaaagcttccattaaaa--atat |
271 |
Q |
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| T |
34504083 |
ataatcatcacagttcaattcgatcaaattaact-agaggacgagtccaacaaatgaatggcacattgttgcaataagaaagcttccattaaaaaaatat |
34504181 |
T |
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| Q |
272 |
atatgttccatggcttgataaattacgaacatgaattgcaatctaaacaagagagtgatgtctttatttaaaattcataccagtcctatcaactacaact |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
34504182 |
atatgttccatggcttgataaattacgaacatgaattgcaacctaaacaagagagtgatgtgtttctttaaaattcataccagtcctatcaactacaact |
34504281 |
T |
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| Q |
372 |
tatgaataatagcaacacaatatttagcttcatcccaagcatcctttacacaaccccatgatacttcatctca |
444 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
34504282 |
tatgaataatagcaacacaatatttagcttcatcccaggcatcctttacacaacctcatgaaacttcatctca |
34504354 |
T |
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