View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16005_low_8 (Length: 290)
Name: NF16005_low_8
Description: NF16005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16005_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 274
Target Start/End: Original strand, 9257695 - 9257962
Alignment:
| Q |
7 |
gagagatgaaactatatgaaacttaccaaccaagaatagtgaaggcaacaggaagaacaagagcctgaataccaatcccagaacaaagagtatgaaaagc |
106 |
Q |
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| T |
9257695 |
gagaaatgaaactatatgaaacttaccaaccaagaatagtgaaggcaacaggaagaacaagagcctgaataccaatcccagaacaaagagtatgaaaagc |
9257794 |
T |
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| Q |
107 |
agcataatatttgttaccatttcttgactcagtaattggaagccaagcatcttgaggatcaagcttagttaatctcaaagctttcctcataggacttccc |
206 |
Q |
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| T |
9257795 |
agcataatatttgttaccatttcttgactcagttattggaagccaagcatcttgaggatcaagcttagttaatctcaaagctttcctcataggacttccc |
9257894 |
T |
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| Q |
207 |
aaaggggtaataaaccttggtgtcaaagacattcttggtgttctaggagtctttggagtcttactctt |
274 |
Q |
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| T |
9257895 |
aaaggggtaataaaccttggtgtcaaagacattcttggtgttctaggagtctttggagtcttactctt |
9257962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 26 - 259
Target Start/End: Original strand, 9244047 - 9244283
Alignment:
| Q |
26 |
aacttaccaaccaagaatagtgaaggcaacaggaagaacaagagcctgaataccaatcccagaacaaagagtatgaaaagcagcataatatttgttacca |
125 |
Q |
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| T |
9244047 |
aacttaccaaccaagaatagtgaaagcaacaggaagaacaagagcttgaataccaatcccagaacaaagagtatgaaaagcagcataatatttgttacca |
9244146 |
T |
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| Q |
126 |
tttcttgactcagtaattggaagccaagcatcttgaggatcaagcttagttaatctcaaagctttcctcataggacttcccaaaggggtaataaaccttg |
225 |
Q |
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| T |
9244147 |
tttcttgactcagttattggaagccaagcatcttgaggatcaagtttgattagtctcaaagcattcctaacaggtgttcctaaaggggtaataaaccttg |
9244246 |
T |
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| Q |
226 |
gt---gtcaaagacattcttggtgttctaggagtctt |
259 |
Q |
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| T |
9244247 |
gtggggtaaaagacattcttggtgttctaggggtctt |
9244283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 3099825 - 3099782
Alignment:
| Q |
132 |
gactcagtaattggaagccaagcatcttgaggatcaagcttagt |
175 |
Q |
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| T |
3099825 |
gactcggtaattggaagccatgcatcttgaggattaagcttagt |
3099782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 53781715 - 53781796
Alignment:
| Q |
31 |
accaaccaagaatagtgaaggcaacaggaagaacaagagcctgaataccaatcccagaacaaagagtatgaaaagcagcata |
112 |
Q |
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| T |
53781715 |
accagccaagagtggtgaaggccaaaggaagaacaagtgcttgaaatccaattccagaacaaagcaaatgaaaagcagcata |
53781796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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