View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16005_low_9 (Length: 270)

Name: NF16005_low_9
Description: NF16005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16005_low_9
NF16005_low_9
[»] chr7 (14 HSPs)
chr7 (6-251)||(49002269-49002512)
chr7 (29-251)||(22955072-22955294)
chr7 (17-247)||(37854059-37854288)
chr7 (18-251)||(4618515-4618748)
chr7 (12-250)||(8133320-8133558)
chr7 (12-247)||(5781567-5781799)
chr7 (91-251)||(40382016-40382177)
chr7 (17-243)||(23402140-23402365)
chr7 (108-241)||(4902465-4902598)
chr7 (12-244)||(7742968-7743211)
chr7 (146-251)||(10675019-10675124)
chr7 (22-149)||(19786343-19786470)
chr7 (185-244)||(25470643-25470702)
chr7 (69-149)||(8758396-8758476)
[»] chr5 (27 HSPs)
chr5 (17-251)||(22616548-22616781)
chr5 (18-250)||(41417340-41417572)
chr5 (17-250)||(36055636-36055868)
chr5 (17-247)||(31878437-31878668)
chr5 (29-245)||(33163579-33163797)
chr5 (17-247)||(10237468-10237697)
chr5 (58-248)||(27579123-27579311)
chr5 (12-251)||(21320800-21321038)
chr5 (146-244)||(29766569-29766667)
chr5 (12-149)||(25653633-25653770)
chr5 (187-251)||(12080494-12080558)
chr5 (58-143)||(10053318-10053403)
chr5 (180-244)||(25654566-25654630)
chr5 (185-251)||(13381123-13381189)
chr5 (58-149)||(12081129-12081220)
chr5 (185-247)||(33752472-33752534)
chr5 (24-149)||(13380560-13380685)
chr5 (185-238)||(33848120-33848173)
chr5 (70-149)||(21266126-21266205)
chr5 (70-149)||(13887348-13887427)
chr5 (185-244)||(8762963-8763022)
chr5 (185-245)||(10053820-10053882)
chr5 (185-244)||(13888329-13888388)
chr5 (12-143)||(26411346-26411477)
chr5 (29-149)||(8777275-8777395)
chr5 (109-149)||(25521705-25521745)
chr5 (29-149)||(33752910-33753030)
[»] chr3 (26 HSPs)
chr3 (18-251)||(32180511-32180740)
chr3 (12-251)||(19606674-19606913)
chr3 (17-232)||(49359407-49359622)
chr3 (17-251)||(40640391-40640628)
chr3 (17-243)||(44880845-44881070)
chr3 (18-251)||(7568486-7568712)
chr3 (17-248)||(45879250-45879492)
chr3 (58-242)||(26000627-26000811)
chr3 (20-236)||(38392403-38392619)
chr3 (12-245)||(47930433-47930665)
chr3 (62-245)||(7758190-7758372)
chr3 (90-248)||(51878241-51878398)
chr3 (22-149)||(42204405-42204530)
chr3 (188-248)||(40744202-40744262)
chr3 (12-120)||(4556590-4556702)
chr3 (185-244)||(36689674-36689733)
chr3 (29-122)||(53811865-53811958)
chr3 (147-215)||(31706763-31706831)
chr3 (86-142)||(47870314-47870370)
chr3 (185-244)||(11019700-11019759)
chr3 (185-244)||(48154454-48154513)
chr3 (185-247)||(12121217-12121279)
chr3 (17-149)||(54606760-54606892)
chr3 (17-80)||(18272155-18272218)
chr3 (36-149)||(43485384-43485497)
chr3 (191-247)||(11872740-11872796)
[»] chr1 (18 HSPs)
chr1 (12-250)||(13876680-13876918)
chr1 (18-251)||(27118385-27118618)
chr1 (17-241)||(15964154-15964378)
chr1 (17-251)||(16127574-16127805)
chr1 (17-251)||(10758060-10758294)
chr1 (58-247)||(25943293-25943482)
chr1 (32-241)||(31804854-31805063)
chr1 (146-247)||(3120626-3120727)
chr1 (146-251)||(47554938-47555043)
chr1 (168-248)||(16135528-16135608)
chr1 (22-163)||(16132534-16132675)
chr1 (157-247)||(3120238-3120328)
chr1 (12-149)||(421442-421579)
chr1 (20-113)||(28012123-28012216)
chr1 (145-197)||(43579463-43579515)
chr1 (185-244)||(422205-422264)
chr1 (106-149)||(21263907-21263950)
chr1 (88-148)||(17695870-17695930)
[»] chr2 (26 HSPs)
chr2 (17-250)||(41643926-41644160)
chr2 (17-246)||(15650902-15651131)
chr2 (17-247)||(6177829-6178058)
chr2 (17-255)||(18059118-18059356)
chr2 (17-249)||(27138783-27139014)
chr2 (110-251)||(18947370-18947511)
chr2 (91-251)||(39788370-39788530)
chr2 (17-239)||(18779179-18779395)
chr2 (12-206)||(34441729-34441920)
chr2 (93-251)||(38249898-38250052)
chr2 (12-247)||(41713213-41713445)
chr2 (146-245)||(17244836-17244935)
chr2 (149-243)||(19093640-19093734)
chr2 (17-251)||(19073412-19073640)
chr2 (12-244)||(42005438-42005667)
chr2 (146-250)||(18514493-18514597)
chr2 (162-247)||(34441644-34441728)
chr2 (12-149)||(30844897-30845033)
chr2 (188-249)||(27355193-27355254)
chr2 (185-230)||(40912471-40912516)
chr2 (34-142)||(58097-58204)
chr2 (185-228)||(32652621-32652664)
chr2 (188-247)||(45411917-45411976)
chr2 (185-215)||(7565511-7565541)
chr2 (89-149)||(7553480-7553540)
chr2 (12-104)||(22963453-22963545)
[»] chr4 (16 HSPs)
chr4 (17-251)||(2266617-2266850)
chr4 (90-251)||(2570605-2570766)
chr4 (12-248)||(9743637-9743875)
chr4 (86-247)||(17612457-17612618)
chr4 (18-251)||(1012351-1012575)
chr4 (88-247)||(2707998-2708156)
chr4 (146-251)||(49878858-49878963)
chr4 (29-197)||(54995613-54995781)
chr4 (18-149)||(22756794-22756924)
chr4 (27-149)||(22729775-22729896)
chr4 (12-104)||(51204632-51204724)
chr4 (17-120)||(28293124-28293227)
chr4 (189-247)||(54995010-54995068)
chr4 (185-241)||(28292430-28292486)
chr4 (58-149)||(33036064-33036155)
chr4 (36-104)||(51959922-51959990)
[»] chr8 (12 HSPs)
chr8 (86-250)||(3038529-3038692)
chr8 (12-247)||(4108679-4108911)
chr8 (86-234)||(6267282-6267430)
chr8 (58-241)||(7290814-7290997)
chr8 (58-248)||(18756430-18756620)
chr8 (107-244)||(23176554-23176690)
chr8 (146-251)||(30651003-30651108)
chr8 (145-247)||(28220797-28220898)
chr8 (157-251)||(34685969-34686063)
chr8 (19-122)||(34463472-34463575)
chr8 (58-148)||(35735844-35735933)
chr8 (58-123)||(30381002-30381067)
[»] chr6 (13 HSPs)
chr6 (12-242)||(11083924-11084151)
chr6 (53-250)||(34993921-34994118)
chr6 (63-215)||(30341124-30341276)
chr6 (12-251)||(19631798-19632035)
chr6 (130-250)||(4104183-4104303)
chr6 (12-247)||(26301685-26301922)
chr6 (145-251)||(6613753-6613859)
chr6 (185-244)||(4487823-4487882)
chr6 (185-244)||(25441709-25441768)
chr6 (18-73)||(4102864-4102919)
chr6 (106-149)||(4488444-4488487)
chr6 (191-244)||(3148918-3148971)
chr6 (86-122)||(4103034-4103070)
[»] scaffold0200 (1 HSPs)
scaffold0200 (17-247)||(24582-24811)
[»] scaffold0050 (1 HSPs)
scaffold0050 (18-251)||(5645-5877)
[»] scaffold0312 (2 HSPs)
scaffold0312 (12-149)||(8993-9130)
scaffold0312 (185-244)||(8308-8367)
[»] scaffold0001 (1 HSPs)
scaffold0001 (185-245)||(65992-66052)
[»] scaffold0262 (2 HSPs)
scaffold0262 (86-143)||(12034-12091)
scaffold0262 (189-241)||(11443-11495)
[»] scaffold0003 (1 HSPs)
scaffold0003 (191-247)||(107955-108011)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 251
Target Start/End: Original strand, 49002269 - 49002512
Alignment:
Q  6 agtgagatgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatcc 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||  |||||||||     
T  49002269 agtgaaatgaacaatcattgagtatttgtgtatttaatccataccatatcagattatatggtgtattgcacattttcccttaaggtgt--cattatatct 49002366  T
Q  106 ttacttattgcaattgtgt-tctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggac 204  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49002367 ttacttattgcaattgtgtgtct-gattaaatcaaaattaaacatagattcccatttgtgcactaagattaaaattccccttaatattttgtatgaggac 49002465  T
Q  205 tgatttgtaatgaggtaaagtttagttttagagtggtccaccagcag 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  49002466 tgatttgtaatgaggtaaagtttagttttagagtggtccaccagcag 49002512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 22955294 - 22955072
Alignment:
Q  29 atttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttcta 128  Q
    |||||||||||||||||||  ||  ||| |||||||||| |||||||||||| ||| |||||| ||||||| |||| ||||||||||||||||||| |      
T  22955294 atttgtgtatttaatccatgtcacgtcaaattatatggtgtattgcacatttgctcataaggtatgtcattgtatctttacttattgcaattgtgtccct 22955195  T
Q  129 gattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagttta 228  Q
     |||||||||| ||| ||||||||||  |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||    
T  22955194 tattaaatcaacattaaacatagattctcatttgtgcactaagattgaaatttcccttaatattttgtatgagaactgatttgtaataaggtaaagttta 22955095  T
Q  229 gttttagagtggtccaccagcag 251  Q
    |||||||||||||||||||||||    
T  22955094 gttttagagtggtccaccagcag 22955072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 37854288 - 37854059
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    |||| |||||| |||||||||||||||||||  ||  ||| |||||||||| |||||||||||| ||| |||||| |||  ||||||| ||||| |||||    
T  37854288 caattattgagcatttgtgtatttaatccatgtcacgtcacattatatggtgtattgcacatttgctcataaggtatgt--ttatatctttactgattgc 37854191  T
Q  117 aattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactg-atttgtaat 215  Q
    |||||||| |  ||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  37854190 aattgtgtccctgattaaatcaaaattaaacatagattttcatttgtacactaagattgaaattccccttaatattttgtatgaggactgaatttggaat 37854091  T
Q  216 gaggtaaagtttagttttagagtggtccacca 247  Q
     | |||||||||| ||||||||||||||||||    
T  37854090 aaagtaaagtttaattttagagtggtccacca 37854059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 4618748 - 4618515
Alignment:
Q  18 aatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgca 117  Q
    |||||||||  ||||||||||||||| |||  |   ||| |||||||||| ||||||||||||  || |||  |||||||||||||  ||| ||||||||    
T  4618748 aatcattgaacatttgtgtatttaattcatgtcgcttcaaattatatggtgtattgcacatttgttcataaaatgtgtcattatatatttatttattgca 4618649  T
Q  118 attgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatga 217  Q
    ||||| | |   |||||||||||||| ||||||||||  ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| | |    
T  4618648 attgtatacctcattaaatcaaaattaaacatagattctcatttgtgcaccaagattgaaattccccttaatattttgtatgatgactgatttgtagtaa 4618549  T
Q  218 ggtaaagtttagttttagagtggtccaccagcag 251  Q
    | ||||||||||||||||||||||||||||||||    
T  4618548 gataaagtttagttttagagtggtccaccagcag 4618515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 8133558 - 8133320
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| |||||||| || ||||||||||||||| ||   ||  ||| |||||||||| |||||||| ||| ||  |||||| |||||||||||| ||||||    
T  8133558 atgatcaatcattaagcatttgtgtatttaattcaagacacgtcagattatatggtgtattgcacgtttgcttataaggtctgtcattatatcattactt 8133459  T
Q  112 attgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttg 211  Q
    |||||||||| || |   |||||||||||||| ||| ||||||   ||||||||| |||||||||||||||||||||||||||  |||| ||||||||||    
T  8133458 attgcaattgcgtccctaattaaatcaaaattaaacgtagattcttatttgtgcagtaagattgaaattccccttaatattttacatgaagactgatttg 8133359  T
Q  212 taatgaggtaaagtttagttttagagtggtccaccagca 250  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  8133358 taataaggtaaagtttagttttagagtggttcaccagca 8133320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 5781567 - 5781799
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| |||||||| | ||||||||||||||||||||  ||  ||||  |||||||| ||||||| ||||   | |||  |||||||||||||| ||| ||    
T  5781567 atgatcaatcattaaatatttgtgtatttaatccatgtcacgtcat--tatatggtgtattgcatatttgaccataaaatgtgtcattatatctttattt 5781664  T
Q  112 attgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttg 211  Q
    ||||||||||||| || ||||||||||||||| ||||||||||  |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  5781665 attgcaattgtgtccttgattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaatt-ccctttatattttgtatgatgactgatttg 5781763  T
Q  212 taatgaggtaaagtttagttttagagtggtccacca 247  Q
    |||| | |||||  ||||||||| |||||| |||||    
T  5781764 taataaagtaaaacttagttttaaagtggtgcacca 5781799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 91 - 251
Target Start/End: Original strand, 40382016 - 40382177
Alignment:
Q  91 tgtgtcattatatccttacttattgcaatt-gtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaat 189  Q
    |||||||||||||| ||||||||| ||||| |||| |   ||||||| |||||| ||||||||||  |||||||||||||||||||||||| ||||||||    
T  40382016 tgtgtcattatatctttacttattacaatttgtgtccctaattaaataaaaattaaacatagattatcatttgtgcactaagattgaaatttcccttaat 40382115  T
Q  190 attttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagcag 251  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||| |||||    
T  40382116 attttgtatgcggactgatttgtaataaggtaaagtttagttttagagtggtgcactagcag 40382177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 23402365 - 23402140
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    ||||||||||  || |||||||||||| |||  ||  |||||||||||||| |||||| |||||   | |||| | |||||||||||  ||||||||| |    
T  23402365 caatcattgaacatctgtgtatttaattcatgtcacgtcatattatatggtgtattgcgcatttgtccataagatatgtcattatatatttacttatttc 23402266  T
Q  117 aattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatg 216  Q
    |||||||| |  ||||||||||||||  ||||| ||||  |||||||||||||||| ||||||| |||||||||||||||| || ||||||||||||||     
T  23402265 aattgtgtccctgattaaatcaaaata-aacattgattctcatttgtgcactaagactgaaatttcccttaatattttgtacgatgactgatttgtaata 23402167  T
Q  217 aggtaaagtttagttttagagtggtcc 243  Q
     | ||||||||||||||||||||||||    
T  23402166 ggataaagtttagttttagagtggtcc 23402140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 4902465 - 4902598
Alignment:
Q  108 acttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactga 207  Q
    |||||||||||| |||| |  ||||||||||||||| |||||||||| | | || ||||||||||| ||||||||||||||||||||||||||| ||| |    
T  4902465 acttattgcaatagtgtccctgattaaatcaaaattaaacatagattccaaattatgcactaagatagaaattccccttaatattttgtatgagtactaa 4902564  T
Q  208 tttgtaatgaggtaaagtttagttttagagtggt 241  Q
    |||||||| |||||||||||||||||||||||||    
T  4902565 tttgtaataaggtaaagtttagttttagagtggt 4902598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 7742968 - 7743211
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| |||||||||||||||||||||||||||| ||  ||  | | |||||||||| ||||| ||||||   | ||||| ||||||||||||| ||||||    
T  7742968 atgatcaatcattgagtatttgtgtatttaatctatgtcacgttagattatatggtgtattgtacatttgtccataaggcgtgtcattatatctttactt 7743067  T
Q  112 attgcaattgtgttctagattaaatcaaaattcaacataga-----------tttccatttgtgcactaagattgaaattccccttaatattttgtatga 200  Q
    ||||||||||||  |  |||||||| |||||| ||||||||           ||||||||| | ||||||||||||||| | | |||||||||| |||||    
T  7743068 attgcaattgtgcccctgattaaattaaaattaaacatagattctcatttgttttccatttatacactaagattgaaatgctctttaatattttatatga 7743167  T
Q  201 ggactgatttgtaatgaggtaaagtttagttttagagtggtcca 244  Q
    || ||| |||||||| ||||||||||||||||||||||||||||    
T  7743168 gggctgctttgtaataaggtaaagtttagttttagagtggtcca 7743211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 10675124 - 10675019
Alignment:
Q  146 acatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccac 245  Q
    |||| |||| ||||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||||| |||||||| |||||    
T  10675124 acatggattcccatttgtgtattaagatttaaattccccttaatattttgtatgaggactaatttgtaataaagtaaagtttagtcttagagtgatccac 10675025  T
Q  246 cagcag 251  Q
     |||||    
T  10675024 aagcag 10675019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 19786343 - 19786470
Alignment:
Q  22 attgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctct-taaggtgtgtcattatatccttacttattgcaatt 120  Q
    |||||| ||||||||||||||| ||| |||  |||||||||||| |  |||||||||||  ||| ||||||||||||||||||| |||||||||||||||    
T  19786343 attgagcatttgtgtatttaattcatgccacgtcatattatatgatgcattgcacatttg-tctgtaaggtgtgtcattatatctttacttattgcaatt 19786441  T
Q  121 gtgttctagattaaatcaaaattcaacat 149  Q
    | || || ||||||||||||||| |||||    
T  19786442 gagtccttgattaaatcaaaattaaacat 19786470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 25470643 - 25470702
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 244  Q
    ||||||||||||| ||||||||||||||||| | ||||| |||||| |||  ||||||||    
T  25470643 ttaatattttgtacgaggactgatttgtaataaagtaaaatttagtgttacggtggtcca 25470702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 8758396 - 8758476
Alignment:
Q  69 tattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacat 149  Q
    ||||||||||||  || || ||||||  | |||||  |||||||||||||||||| ||| |||||||| |||||| |||||    
T  8758396 tattgcacatttattcatacggtgtgctactatatttttacttattgcaattgtgctcttgattaaattaaaattaaacat 8758476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 22616548 - 22616781
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    ||||||||||| |||  ||||||||||||||  ||  |||||||||||||| ||||| |||||| | | ||||||||||||||||||| |||||||||||    
T  22616548 caatcattgagcatta-tgtatttaatccatgtcacgtcatattatatggtgtattggacatttgcccataaggtgtgtcattatatctttacttattgc 22616646  T
Q  117 aattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatg 216  Q
    |||||||| |  ||||||||||||||| ||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  22616647 aattgtgtccctgattaaatcaaaattaaacatagattctcatttgtgcactaaaattgaaattccccttaatattttgtatgaggactgatttgtaata 22616746  T
Q  217 aggtaaagtttagttttagagtggtccaccagcag 251  Q
    |||||||||||||||||||||||||||||||||||    
T  22616747 aggtaaagtttagttttagagtggtccaccagcag 22616781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 41417572 - 41417340
Alignment:
Q  18 aatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgca 117  Q
    |||||||||  |||||||||||||||  ||| ||| ||| |||||||||| ||||||| |||| ||| |||||||||||||| |||| ||||||||||||    
T  41417572 aatcattgaacatttgtgtatttaatttatatcatgtcagattatatggtgtattgcaaatttgctcataaggtgtgtcattttatctttacttattgca 41417473  T
Q  118 attgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatga 217  Q
    ||||||| | |||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |    
T  41417472 attgtgtcccagattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattccccttattattttgtatgatgactgatttgtaataa 41417373  T
Q  218 ggtaaagtttagttttagagtggtccaccagca 250  Q
    |||||| |||||||||| | || ||||||||||    
T  41417372 ggtaaaatttagttttaaaatgatccaccagca 41417340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 36055868 - 36055636
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    ||||||||||| ||||||| ||||||| |||  |  |||| |||| ||||| |||||||||||| ||| ||||||||||||||||||| ||||||||| |    
T  36055868 caatcattgagcatttgtgaatttaattcatgtcgcatcagattacatggtgtattgcacatttgctcataaggtgtgtcattatatctttacttattac 36055769  T
Q  117 aattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatg 216  Q
    |||||||| |  ||||||||||||||| ||||||||||  |||||||||||||||||||||||| |||||||||| ||||||||| | |||||||||||     
T  36055768 aattgtgtccccgattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaatt-cccttaatatcttgtatgagaattgatttgtaata 36055670  T
Q  217 aggtaaagtttagttttagagtggtccaccagca 250  Q
    |||||||||||||||||||||||| |||||||||    
T  36055669 aggtaaagtttagttttagagtgggccaccagca 36055636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 31878437 - 31878668
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctct-taaggtgtgtcattatatccttacttattg 115  Q
    |||||||| || ||||||||||||||| |||  ||  ||| |||||||||| ||||||||||||  ||| ||||||||||||||||||| ||||||||      
T  31878437 caatcattaagcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcacatttg-tctataaggtgtgtcattatatctttacttatga 31878535  T
Q  116 caattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaata-ttttgtatgaggactgatttgtaa 214  Q
    ||||||||| |  ||||||||||||||| |||||||||| | ||||||||||||||||||||||||  ||||||| ||||||||| | |||||| |||||    
T  31878536 caattgtgtccctgattaaatcaaaattaaacatagattcctatttgtgcactaagattgaaattcttcttaatatttttgtatgggaactgatctgtaa 31878635  T
Q  215 tgaggtaaagtttagttttagagtggtccacca 247  Q
    | |||||||||||| ||||||||||||||||||    
T  31878636 taaggtaaagtttaattttagagtggtccacca 31878668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 29 - 245
Target Start/End: Original strand, 33163579 - 33163797
Alignment:
Q  29 atttgtgtatttaatccataccatatcatattatat--ggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttc 126  Q
    |||||||| ||||||| || ||| |||| |||||||  ||| ||||||||||||   | ||||||||| ||||||||| ||||||||||||||||||| |    
T  33163579 atttgtgtgtttaatctatgccacatcagattatatatggtgtattgcacatttatccataaggtgtgccattatatctttacttattgcaattgtgtcc 33163678  T
Q  127 tagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtt 226  Q
      ||||||||||||||| |||||| |||  ||| |||||| |||||||||||||  |||||||||||||||||| |||||||||||||| ||||||||||    
T  33163679 ctgattaaatcaaaattaaacataaattctcatgtgtgcattaagattgaaattttccttaatattttgtatgaagactgatttgtaataaggtaaagtt 33163778  T
Q  227 tagttttagagtggtccac 245  Q
    |||||||| ||||||||||    
T  33163779 tagttttaaagtggtccac 33163797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 10237468 - 10237697
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    ||||||||||| ||||||||||||||| |||  ||  ||| |||||||||| |||||| |||||   | |||||| | |||||||||  ||||||||| |    
T  10237468 caatcattgagcatttgtgtatttaattcatttcacgtcagattatatggtgtattgcgcatttgtccataaggtatttcattatatatttacttattcc 10237567  T
Q  117 aattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatg 216  Q
    |||||||| | |||||||||||||||  ||||||||||  ||||||| |||||||||||||||| |||||||||||||||| || |||| |||||||||     
T  10237568 aattgtgtcccagattaaatcaaaata-aacatagattctcatttgtacactaagattgaaatttcccttaatattttgtacgatgactaatttgtaata 10237666  T
Q  217 aggtaaagtttagttttagagtggtccacca 247  Q
    ||||||||||||||| |||||||||| ||||    
T  10237667 aggtaaagtttagttctagagtggtctacca 10237697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 58 - 248
Target Start/End: Original strand, 27579123 - 27579311
Alignment:
Q  58 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgt-tctagattaaatcaaaattcaacatagatttc 156  Q
    |||||||||| ||||||| |||| |   ||| ||| ||||||||||| ||| ||||||||||||||| |||| |||||||||||| | ||||||  ||||    
T  27579123 attatatggtgtattgcatatttgcctataaagtgcgtcattatatctttatttattgcaattgtgtctcta-attaaatcaaaagtaaacata--tttc 27579219  T
Q  157 catttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccag 248  Q
    ||||||||||||||||||||||||| |||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  27579220 catttgtgcactaagattgaaattctccttaatattttgtttaaggaatgatttgtaataaggtaaagtttagttttagagtggtccaccag 27579311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 21320800 - 21321038
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| ||||||||||| ||| ||||||||||   || ||| |||| |||||||||| ||||||| |||| |   |||| ||| |||||||||| ||||||    
T  21320800 atgatcaatcattgagcattcgtgtatttaactaatgccacatcagattatatggtgtattgcatatttgcatataagatgtatcattatatctttactt 21320899  T
Q  112 attgcaattgtgt-tctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgattt 210  Q
    ||| ||||||||| ||| ||||||||||||||| ||||||||||  |||||| ||||||| ||||||||| | |||||||||||||||||||| ||||||    
T  21320900 attacaattgtgtctct-gattaaatcaaaattaaacatagattctcatttgagcactaaaattgaaatttcgcttaatattttgtatgaggattgattt 21320998  T
Q  211 gtaatgaggtaaagtttagttttagagtggtccaccagcag 251  Q
    |||   |||||||||||||||||||| || |||||||||||    
T  21320999 gtaggaaggtaaagtttagttttaga-tgatccaccagcag 21321038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 146 - 244
Target Start/End: Complemental strand, 29766667 - 29766569
Alignment:
Q  146 acatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 244  Q
    |||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| |||||||||||||    
T  29766667 acatggattcccatttgtgcattaagatttaaattccccttaatattttgtatgagaactaatttgtaataaggtaaagtttagtcttagagtggtcca 29766569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 149
Target Start/End: Original strand, 25653633 - 25653770
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| ||||||||||||||||||||||||||| |||| ||  ||| ||| |||||| |||||||||||| ||| ||||||||||||||||||| ||||||    
T  25653633 atgatcaatcattgagtatttgtgtatttaattcatatcacgtcagattgtatggtgtattgcacatttgctcataaggtgtgtcattatatctttactt 25653732  T
Q  112 attgcaattgtgttctagattaaatcaaaattcaacat 149  Q
    ||||||| | | | |  ||||||||||||||| |||||    
T  25653733 attgcaactatttccctgattaaatcaaaattaaacat 25653770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 12080558 - 12080494
Alignment:
Q  187 aatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagcag 251  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||    
T  12080558 aatattttgtatgaggactgatttgtaataaggtaaagtttagtcttaaagtggtccaccagcag 12080494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 10053318 - 10053403
Alignment:
Q  58 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaatt 143  Q
    ||||||| || |||||||||||| ||| ||||||||||||||||||| |||||||||||||||| || |  |||||||||||||||    
T  10053318 attatatcgtgtattgcacatttgctcataaggtgtgtcattatatctttacttattgcaattgagtccctgattaaatcaaaatt 10053403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 25654566 - 25654630
Alignment:
Q  180 tccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 244  Q
    ||||||||||| ||||||  | |||||||||||||| ||||||||||||||||||||||||||||    
T  25654566 tccccttaatagtttgtacaaagactgatttgtaataaggtaaagtttagttttagagtggtcca 25654630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 13381123 - 13381189
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagcag 251  Q
    ||||||||||||||||||| |||||| |||| |||||||||||||  |||||| |||||||||||||    
T  13381123 ttaatattttgtatgaggattgatttataataaggtaaagtttagccttagagaggtccaccagcag 13381189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 12081220 - 12081129
Alignment:
Q  58 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacat 149  Q
    |||||||||| |||| ||||||| ||  ||||||||||| ||||||| |||||||||||||||  || |  ||||||||||||||| |||||    
T  12081220 attatatggtgtattacacatttgcttataaggtgtgtccttatatctttacttattgcaattaagtccctgattaaatcaaaattaaacat 12081129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 33752534 - 33752472
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 247  Q
    ||||||||||||||||||| |||||| |||| |||||||||||||| ||||||| ||| ||||    
T  33752534 ttaatattttgtatgaggattgatttttaataaggtaaagtttagtcttagagtagtctacca 33752472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 13380560 - 13380685
Alignment:
Q  24 tgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtg 123  Q
    |||||||||||||||||||||  ||  |  ||||| || ||||| |||||||||||| | | |||  | |||||||||||| ||| |||||||||||||     
T  13380560 tgagtatttgtgtatttaatctttataacgtcatactacatggtgtattgcacatttacccataaaatatgtcattatatctttatttattgcaattgta 13380659  T
Q  124 ttctagattaaatcaaaattcaacat 149  Q
    | |  ||||||||||||||| |||||    
T  13380660 tccctgattaaatcaaaattaaacat 13380685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 33848173 - 33848120
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagt 238  Q
    ||||||||||||||||||| |||||| |||| |||||||||||||| |||||||    
T  33848173 ttaatattttgtatgaggattgatttttaataaggtaaagtttagtcttagagt 33848120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 21266126 - 21266205
Alignment:
Q  70 attgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgt-tctagattaaatcaaaattcaacat 149  Q
    ||||||||||| ||| |||||||| |||||||||| |||||||||||||||| || ||| |||||||||||| || |||||    
T  21266126 attgcacatttgctcataaggtgtatcattatatctttacttattgcaattgagtctct-gattaaatcaaatttaaacat 21266205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 13887348 - 13887427
Alignment:
Q  70 attgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacat 149  Q
    |||| |||||| ||| || |||||  ||||||||  ||||||||||||||||||| || ||||||||||||||| |||||    
T  13887348 attgtacatttgctcatatggtgtaccattatatttttacttattgcaattgtgtccttgattaaatcaaaattaaacat 13887427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 8763022 - 8762963
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 244  Q
    ||||||||||||| ||||||||||||||||| | ||||| |||||| |||  ||||||||    
T  8763022 ttaatattttgtacgaggactgatttgtaataaagtaaaatttagtgttacggtggtcca 8762963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 10053820 - 10053882
Alignment:
Q  185 ttaatattttgtatgaggactga--tttgtaatgaggtaaagtttagttttagagtggtccac 245  Q
    |||||||||||||||||||||||  |||||||| | ||||| ||||||  |||||||||||||    
T  10053820 ttaatattttgtatgaggactgatttttgtaataaagtaaaatttagtcgtagagtggtccac 10053882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 13888329 - 13888388
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 244  Q
    |||||||||||||||||||||||||| |||| | ||||| |||||| ||| || ||||||    
T  13888329 ttaatattttgtatgaggactgatttataataaagtaaaatttagtgttacaggggtcca 13888388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 26411346 - 26411477
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| |||||||||| ||||| |||||||||| |||  ||  ||| |||||||||| ||||| |||||| ||| ||  || || || |||||  ||||||    
T  26411346 atgaccaatcattgaatatttatgtatttaatacatgtcacgtcaaattatatggtgtattgtacatttgctcatacagtatgccactatatatttactt 26411445  T
Q  112 attgcaattgtgttctagattaaatcaaaatt 143  Q
    ||||||||||| | |   ||||||||||||||    
T  26411446 attgcaattgtatccctaattaaatcaaaatt 26411477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 8777395 - 8777275
Alignment:
Q  29 atttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttcta 128  Q
    ||||||||||||||| ||| ||| |||| ||| ||  ||  |||| |||||| ||| || |||||  || |||||  ||||||||||||||||||| ||     
T  8777395 atttgtgtatttaatgcatgccacatcaaattttagtgtgcattgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtcctt 8777296  T
Q  129 gattaaatcaaaattcaacat 149  Q
      ||||||||||||| |||||    
T  8777295 cgttaaatcaaaattaaacat 8777275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 25521745 - 25521705
Alignment:
Q  109 cttattgcaattgtgttctagattaaatcaaaattcaacat 149  Q
    |||||||||||||||| || ||||||||||||||| |||||    
T  25521745 cttattgcaattgtgtccttgattaaatcaaaattaaacat 25521705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 33753030 - 33752910
Alignment:
Q  29 atttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttcta 128  Q
    |||||||||||||||| ||  ||  ||| |||||| ||| ||||||||||||   |  ||||||||| ||| |||| ||||||||||| ||||||| |      
T  33753030 atttgtgtatttaatcaatgtcacttcagattatagggtttattgcacatttgtccacaaggtgtgttattgtatctttacttattgccattgtgtccct 33752931  T
Q  129 gattaaatcaaaattcaacat 149  Q
    |||||||| ||| || |||||    
T  33752930 gattaaataaaatttaaacat 33752910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 32180740 - 32180511
Alignment:
Q  18 aatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgca 117  Q
    |||||||||| |||||||||||||||  ||  ||  ||| |||||| |||||  |||||||||  ||| |||||||||||||||||| ||||||||||||    
T  32180740 aatcattgagcatttgtgtatttaatttatgtcacgtcagattatacggtat--tgcacatttg-tct-aaggtgtgtcattatatctttacttattgca 32180645  T
Q  118 attgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatga 217  Q
    ||||||| |  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32180644 attgtgtccctgattaaatcaaaattaaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaataa 32180545  T
Q  218 ggtaaagtttagttttagagtggtccaccagcag 251  Q
    ||||||||||||||||||||||||||||||||||    
T  32180544 ggtaaagtttagttttagagtggtccaccagcag 32180511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 19606913 - 19606674
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| |||| |||||| ||||||||||||||| ||   ||  ||| |||||||||| ||||| |||||||  | ||||||||||||||||||| ||||||    
T  19606913 atgaccaatgattgagcatttgtgtatttaattcaggtcacgtcagattatatggtgtattgaacatttttccataaggtgtgtcattatatctttactt 19606814  T
Q  112 attgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttg 211  Q
     ||||||| |||| |   |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19606813 gttgcaatcgtgtcccttattaaatcaaaattaaacatagatttccatttgtgcaccaagattgaaattccccttaatattttgtatgaggactgatttg 19606714  T
Q  212 taatgaggtaaagtttagttttagagtggtccaccagcag 251  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  19606713 taataaggtaaagtttagttttagagtggtccacgagcag 19606674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 49359622 - 49359407
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    ||||||||||  |||||||||||||||||||  ||  |||||||||||| | |||||||||||| ||| ||||||||||||||||||| ||||||| |||    
T  49359622 caatcattgaacatttgtgtatttaatccatgacacgtcatattatatgatgtattgcacatttgctcataaggtgtgtcattatatctttacttaatgc 49359523  T
Q  117 aattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatg 216  Q
    |||||||| |  ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||     
T  49359522 aattgtgtccctgattaaatcaaaattaaacatagatttctatttgtgcactaagattgaaattccctttaatattttgtatgaggactgatttataata 49359423  T
Q  217 aggtaaagtttagttt 232  Q
    ||||||||||||||||    
T  49359422 aggtaaagtttagttt 49359407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 40640628 - 40640391
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    ||||||||||| |||||||||||||||||||  ||  |||||||||||||| |||||||||||| | | |||| |||||||||||||  |||||||||||    
T  40640628 caatcattgagcatttgtgtatttaatccatgtcacgtcatattatatggtgtattgcacatttgcccataagatgtgtcattatatttttacttattgc 40640529  T
Q  117 ---aattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgta 213  Q
       |||||||| || ||||||||||||||| || ||| |||  |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  40640528 tgcaattgtgtccttgattaaatcaaaattaaagatatattctcatttgtgcactaaaattgaaattctccttaatattttgtatgaggactgatttgta 40640429  T
Q  214 atgaggtaaagtttagttttagagtggtccaccagcag 251  Q
    || |  |||||||||||||||||||| || ||||||||    
T  40640428 ataaaataaagtttagttttagagtgatctaccagcag 40640391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 44880845 - 44881070
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    ||||||||||  |||| ||||||||||||||  ||  ||| || ||||||| |||||||||||| ||| ||||| ||||||||||||| ||||||||| |    
T  44880845 caatcattgaacatttatgtatttaatccatgtcacgtcagataatatggtgtattgcacatttgctcataagg-gtgtcattatatctttacttattac 44880943  T
Q  117 aattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatg 216  Q
    |||||||| |  ||||||||||||||| ||||||||||  ||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||     
T  44880944 aattgtgtccctgattaaatcaaaattaaacatagattcacatttgtgcactaggattgaaattccccttaatattttatatgaggattgatttgtaata 44881043  T
Q  217 aggtaaagtttagttttagagtggtcc 243  Q
    |||||||||||||||||||| ||||||    
T  44881044 aggtaaagtttagttttagattggtcc 44881070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 7568712 - 7568486
Alignment:
Q  18 aatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgca 117  Q
    |||||||||| ||||||||||||||| |||  ||  ||| ||||||||   |||||||||||| | | ||| ||||||||||||||| ||||||||| ||    
T  7568712 aatcattgagcatttgtgtatttaattcatgtcacgtcagattatatgcagtattgcacatttgcacataaagtgtgtcattatatctttacttattaca 7568613  T
Q  118 attgtgt-tctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatg 216  Q
    ||||||| ||| ||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  7568612 attgtgtctct-gattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgta--- 7568517  T
Q  217 aggtaaagtttagttttagagtggtccaccagcag 251  Q
        |||||||||||||||||||||||||||||||    
T  7568516 ----aaagtttagttttagagtggtccaccagcag 7568486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 45879492 - 45879250
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttct-----------cttaaggtgtgtcattatatcc 105  Q
    ||||||||||| ||||||||||||||||||| |||  ||| |||||||||| ||||||||||||  |           | ||||||||||| |||||||     
T  45879492 caatcattgagcatttgtgtatttaatccatgccacgtcagattatatggtgtattgcacatttgttgcacatttgcccataaggtgtgtcgttatatct 45879393  T
Q  106 ttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggact 205  Q
    |||||||||| |||||| |||  ||||||||||||||| ||||||||||  |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  45879392 ttacttattgaaattgttttcctgattaaatcaaaattaaacatagattctcatttgtgcactaacattgaaattcccctttatattttgtatgaggact 45879293  T
Q  206 gatttgtaatgaggtaaagtttagttttagagtggtccaccag 248  Q
    |||||||||| ||||||||||||| |||| |||||||||||||    
T  45879292 gatttgtaataaggtaaagtttagctttaaagtggtccaccag 45879250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 58 - 242
Target Start/End: Original strand, 26000627 - 26000811
Alignment:
Q  58 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttcc 157  Q
    |||||| ||| ||||||| |||||||| ||| ||||||||||||  | |||||||||||||||||||  | ||||||||||||||| ||||||||||  |    
T  26000627 attatacggtgtattgcatattttctcgtaaagtgtgtcattatcgctttacttattgcaattgtgtcattgattaaatcaaaattaaacatagattctc 26000726  T
Q  158 atttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtc 242  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||    
T  26000727 atttgtgcactaaaattgaaatttcccttaatattttgtatgagtactgatttgtaataaagtaaagtttagttttagagtggtc 26000811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 38392619 - 38392403
Alignment:
Q  20 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 119  Q
    |||||||  |||||||||||||||||||  |||  || |||||||| | |||||||||||| | | ||| ||||||||||||||  ||||||||||||||    
T  38392619 tcattgaacatttgtgtatttaatccatgtcatgacagattatatgatgtattgcacatttgcccataatgtgtgtcattatatatttacttattgcaat 38392520  T
Q  120 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 219  Q
    ||||| |  ||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||||||| || |||||||||||||| | |    
T  38392519 tgtgtccctgattaaatcaaaattaaacatagattttcatttatgcactaagattgaaatttcccttaatattttgtaagatgactgatttgtaataatg 38392420  T
Q  220 taaagtttagttttaga 236  Q
    |||| ||||||||||||    
T  38392419 taaaatttagttttaga 38392403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 47930665 - 47930433
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| ||||||||||  |||||||||||||||||||   |||||  |||||||||| |||||||| |||   | ||||  ||||||||||  | ||||||    
T  47930665 atgaccaatcattgaacatttgtgtatttaatccatgttatatcg-attatatggtgtattgcacctttgtccctaagacgtgtcattattcctttactt 47930567  T
Q  112 attgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttg 211  Q
    ||||||||||||| |   |||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  47930566 attgcaattgtgtccctcattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattccccttaatattttgtataatgactgatttg 47930467  T
Q  212 taatgaggtaaagtttagttttagagtggtccac 245  Q
    |||| | |||||| ||||||||||||||||||||    
T  47930466 taataaagtaaagcttagttttagagtggtccac 47930433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 62 - 245
Target Start/End: Complemental strand, 7758372 - 7758190
Alignment:
Q  62 tatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccattt 161  Q
    |||||| ||||| |||||| | | ||||||| ||||||||||| ||||||||||||||||||| |   |||||||||||||| ||||||||||  |||||    
T  7758372 tatggtgtattgtacatttgcccataaggtgcgtcattatatctttacttattgcaattgtgtccctaattaaatcaaaattaaacatagattctcattt 7758273  T
Q  162 gtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccac 245  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||  || ||||| |||||||||||||| |||||    
T  7758272 gtgcactaagattgaaattcccctt-atattttgtatgaagactgatttgtaaaaagataaagcttagttttagagtgctccac 7758190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 248
Target Start/End: Original strand, 51878241 - 51878398
Alignment:
Q  90 gtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaat 189  Q
    |||||| |||||||  |||||||||||||||||||    |||||||| |||||| ||||||||||  ||||| ||||||||||||||||||| | |||||    
T  51878241 gtgtgttattatattgttacttattgcaattgtgtctccgattaaataaaaattaaacatagattctcatttatgcactaagattgaaattctc-ttaat 51878339  T
Q  190 attttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccag 248  Q
    |||||||||||| ||||| ||||||| |||||||||||| ||||||||||  |||||||    
T  51878340 attttgtatgagtactgaattgtaataaggtaaagtttaattttagagtgacccaccag 51878398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 42204405 - 42204530
Alignment:
Q  22 attgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattg 121  Q
    |||||| |||||||||||||||| ||  || |||  |||||||||| ||||||| |||| ||| |||||||||||| |||||| ||||||||||||||||    
T  42204405 attgagcatttgtgtatttaatctatgtcacatcggattatatggtgtattgcatatttactcataaggtgtgtca-tatatctttacttattgcaattg 42204503  T
Q  122 tgttctagattaaatcaaaattcaacat 149  Q
     || || ||||||||||||||| |||||    
T  42204504 agtcct-gattaaatcaaaattaaacat 42204530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 40744262 - 40744202
Alignment:
Q  188 atattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccag 248  Q
    |||||||||||||||| ||||||||||| |||||| ||||||| ||||||||||| |||||    
T  40744262 atattttgtatgaggattgatttgtaataaggtaatgtttagtcttagagtggtctaccag 40744202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 4556590 - 4556702
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccatac----catatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatcctt 107  Q
    |||| |||||||||||||||||||||||||||  || |    ||  ||| |||||||||  |||||||||||| ||| ||| ||||||||||||||| ||    
T  4556590 atgaccaatcattgagtatttgtgtatttaattaattcatgtcacgtcagattatatggcgtattgcacatttgctcataatgtgtgtcattatatcttt 4556689  T
Q  108 acttattgcaatt 120  Q
    ||||||| |||||    
T  4556690 acttattacaatt 4556702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 36689674 - 36689733
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 244  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||  ||||||||    
T  36689674 ttaatattttgtatgaggacttatttgtaataaagtaaagtttagttttacggtggtcca 36689733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 53811958 - 53811865
Alignment:
Q  29 atttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgt 122  Q
    |||| ||||||||||||||  ||  ||| |||||||||| |||| |||||||   | ||||||||||||||||||| ||||||| |||||||||    
T  53811958 atttatgtatttaatccatgtcacgtcagattatatggtgtattccacatttgtacataaggtgtgtcattatatctttacttaatgcaattgt 53811865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 31706831 - 31706763
Alignment:
Q  147 catagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaat 215  Q
    ||||||||  ||||||||||||| |||||||| |||| ||||||||||||||| ||| |||||| ||||    
T  31706831 catagattctcatttgtgcactacgattgaaactccctttaatattttgtatgtggattgatttataat 31706763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 47870314 - 47870370
Alignment:
Q  86 taaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaat 142  Q
    ||||||||||||||||||| |||| ||||||||||| || || ||||||||||||||    
T  47870314 taaggtgtgtcattatatctttacgtattgcaattgagtccttgattaaatcaaaat 47870370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 11019700 - 11019759
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 244  Q
    |||||||||| || ||||||||||||||||| || |||| |||||| |||||||||||||    
T  11019700 ttaatattttatacgaggactgatttgtaataagataaaatttagtcttagagtggtcca 11019759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 48154513 - 48154454
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 244  Q
    ||||| ||||||||||||||||||||||||| | ||||| |||||| ||| |||||||||    
T  48154513 ttaatgttttgtatgaggactgatttgtaataaagtaaaatttagtgttacagtggtcca 48154454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 12121279 - 12121217
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 247  Q
    |||||||||||||| |||| | ||||||||| |||||||||||||| ||| |||||| |||||    
T  12121279 ttaatattttgtataaggagttatttgtaataaggtaaagtttagtcttatagtggttcacca 12121217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 54606760 - 54606892
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    ||||||||||  |||||||||||||||  ||  ||| ||| || ||| ||| |||||||||||| ||| || ||||||    |||||  |||||||||||    
T  54606760 caatcattgaacatttgtgtatttaatgtatgtcatgtcaaatcatacggtgtattgcacatttactcatacggtgtgctgctatatttttacttattgc 54606859  T
Q  117 aattgtgttctagattaaatcaaaattcaacat 149  Q
    |||||||  || |||||||| |||||| |||||    
T  54606860 aattgtgcccttgattaaattaaaattaaacat 54606892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 18272218 - 18272155
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattt 80  Q
    ||||||||||  ||||||||||||||| |||| ||  ||| |||||||||| ||||||||||||    
T  18272218 caatcattgaacatttgtgtatttaattcatatcaagtcagattatatggtgtattgcacattt 18272155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 149
Target Start/End: Original strand, 43485384 - 43485497
Alignment:
Q  36 tatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaa 135  Q
    |||||||| ||| |||  ||| ||||||||||  |||||| |||| | | |||| |||||||||||||  |||||||||| ||||| || |  |||||||    
T  43485384 tatttaattcatgccacttcagattatatggtgcattgcatatttgcccctaagatgtgtcattatatttttacttattgtaattgagtccctgattaaa 43485483  T
Q  136 tcaaaattcaacat 149  Q
    | |||||| |||||    
T  43485484 ttaaaattaaacat 43485497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 11872740 - 11872796
Alignment:
Q  191 ttttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 247  Q
    |||| |||||||||||||| ||||| | | |||||||||  ||||||||||||||||    
T  11872740 ttttctatgaggactgattcgtaataaagaaaagtttagacttagagtggtccacca 11872796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 13876918 - 13876680
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| |||||||||||||||||||||||||||| || |||  |||||| ||||||| |||| ||||||| | | ||| ||||||||||||||  ||| ||    
T  13876918 atgatcaatcattgagtatttgtgtatttaatcaatgccacgtcatatcatatggtgtattacacatttgcccataaagtgtgtcattatatttttagtt 13876819  T
Q  112 attgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttg 211  Q
    ||||||||||| | || ||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  13876818 attgcaattgtatccttgattaaatcaaaattaaacatagattcccatttgtgcactaatattgaaattccccttaatattttgtatgagtaccgatttg 13876719  T
Q  212 taatgaggtaaagtttagttttagagtggtccaccagca 250  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  13876718 taataaggtaaagtttagttttagagtggtccaccagca 13876680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 27118385 - 27118618
Alignment:
Q  18 aatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgca 117  Q
    |||||| ||| |||| |||||||||||||| |||  |||||||||||| | ||||||||||||  || ||||||||||||||||||| ||||||||||||    
T  27118385 aatcatggagcatttatgtatttaatccatgccacgtcatattatatgatgtattgcacatttgttcataaggtgtgtcattatatctttacttattgca 27118484  T
Q  118 attgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatga 217  Q
    ||||||| |  ||||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  27118485 attgtgtccctgattaaatcaaaattaaacatagattctcattcgtgcactaagattgaaattccccttaatattttgtatgatgactgatttgtaataa 27118584  T
Q  218 ggtaaagtttagttttagagtggtccaccagcag 251  Q
    |||||||| ||||||||||||| |||||||||||    
T  27118585 ggtaaagtatagttttagagtgatccaccagcag 27118618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 15964154 - 15964378
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    |||||||| || |||||||||||||||| ||  ||  ||| ||||||| || ||||||||||||   | |||| ||||||||||||| |||||| ||  |    
T  15964154 caatcattaagcatttgtgtatttaatctatgtcacgtcaaattatatagtgtattgcacatttgtccataagatgtgtcattatatacttactgatatc 15964253  T
Q  117 aattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatg 216  Q
    |||||||| |  ||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  15964254 aattgtgtccctgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaata 15964353  T
Q  217 aggtaaagtttagttttagagtggt 241  Q
    ||||||| |||||||||||||||||    
T  15964354 aggtaaaatttagttttagagtggt 15964378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 16127574 - 16127805
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    ||||||||||  |||||||||||||||||||  ||  ||| |||||||| | |||||||||||| ||| ||||||||||||||||||  |||||||||||    
T  16127574 caatcattgatcatttgtgtatttaatccatgacacgtcagattatatgatgtattgcacatttactcataaggtgtgtcattatatgtttacttattgc 16127673  T
Q  117 aattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatg 216  Q
    ||||||   |  || ||||||||| || ||||||||||  |||||||||||||||||||| |||||||||||||||||  |||||||||| ||||||||     
T  16127674 aattgtc--cctgaataaatcaaa-ttaaacatagattctcatttgtgcactaagattgagattccccttaatattttaaatgaggactggtttgtaata 16127770  T
Q  217 aggtaaagtttagttttagagtggtccaccagcag 251  Q
    |||||||||||||||||| ||| ||||||| ||||    
T  16127771 aggtaaagtttagttttaaagtagtccacctgcag 16127805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 10758294 - 10758060
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    ||||||||||| ||||||||||||||| ||| ||| |||| |||||||||| ||||| |||||| |   ||  ||||||||||||||  |||||||||||    
T  10758294 caatcattgagcatttgtgtatttaattcatgccacatcagattatatggtgtattgaacatttgcctatagtgtgtgtcattatatttttacttattgc 10758195  T
Q  117 aattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatg 216  Q
    |||||||| |   |||||||||||||| |||||| |||  |||||||||||||||||||||||| | ||||||||||| ||||| ||||||  ||||||     
T  10758194 aattgtgtccctaattaaatcaaaattaaacatatattctcatttgtgcactaagattgaaatttctcttaatattttatatgatgactgaagtgtaata 10758095  T
Q  217 aggtaaagtttagttttagagtggtccaccagcag 251  Q
    | | ||| ||||||||||||||| |||||||||||    
T  10758094 aagcaaaatttagttttagagtgatccaccagcag 10758060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 58 - 247
Target Start/End: Original strand, 25943293 - 25943482
Alignment:
Q  58 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttcc 157  Q
    |||||||||| |||||||| ||| ||  ||| | ||| ||||||||| ||| |||||| |||| |||| | ||||||||||||||| ||||||||||  |    
T  25943293 attatatggtgtattgcacgtttgctgataatgcgtgccattatatctttatttattgtaattttgtttttgattaaatcaaaattaaacatagattctc 25943392  T
Q  158 atttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 247  Q
    ||||||||| ||||||||||||| | |||||||||||||| || |||||||||||||| || |||| ||||||  |||||||||||||||    
T  25943393 atttgtgcaataagattgaaatttctcttaatattttgtacgatgactgatttgtaataagataaaatttagtagtagagtggtccacca 25943482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 241
Target Start/End: Complemental strand, 31805063 - 31804854
Alignment:
Q  32 tgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagat 131  Q
    ||||||||||||| || |||  | | |||||||||| |||||||||||| |   |||  | |||||||||||| |||||| ||| ||||||||    |||    
T  31805063 tgtgtatttaatctatgccacgttagattatatggtgtattgcacatttgccgataacatatgtcattatatctttacttcttgaaattgtgtcactgat 31804964  T
Q  132 taaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagtt 231  Q
    |||||||||||| ||||||||||  ||||| |||||||||||||||||| ||||||||||||| |||||| | || |||||||| |||||||||||| ||    
T  31804963 taaatcaaaattaaacatagattctcatttatgcactaagattgaaatttcccttaatattttatatgagaattggtttgtaataaggtaaagtttaatt 31804864  T
Q  232 ttagagtggt 241  Q
    ||| ||||||    
T  31804863 ttatagtggt 31804854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 3120727 - 3120626
Alignment:
Q  146 acatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccac 245  Q
    |||||||||  |||||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  3120727 acatagattcacatttgtgcattaaaattgaaataccccttaatatattgtatgaggactgatttgtaataaggtaaagtttaatcttagagtggtccac 3120628  T
Q  246 ca 247  Q
    ||    
T  3120627 ca 3120626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 251
Target Start/End: Original strand, 47554938 - 47555043
Alignment:
Q  146 acatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccac 245  Q
    |||||||||  |||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||||||||| | ||||||||||| ||    
T  47554938 acatagattctcatttgtgcactaagatttaaattcctcttaatattttgtatgatgactgatttgtaataaggtaaagtttactcttagagtggtctac 47555037  T
Q  246 cagcag 251  Q
     |||||    
T  47555038 tagcag 47555043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 16135528 - 16135608
Alignment:
Q  168 taagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccag 248  Q
    |||||||||||||| | ||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  16135528 taagattgaaattctcattaatattttgtatgagaactgatttgtaatagggtaaagtttagttttagagtggtccaccag 16135608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 163
Target Start/End: Original strand, 16132534 - 16132675
Alignment:
Q  22 attgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattg 121  Q
    |||||| ||||||||||||||||||| | |  | | |||||| ||| |||||||||||| | | ||| ||||||||||||||| ||||||||||||||||    
T  16132534 attgagcatttgtgtatttaatccatgcaacgtgagattatacggtgtattgcacatttgcacataatgtgtgtcattatatctttacttattgcaattg 16132633  T
Q  122 tgt-tctagattaaatcaaaattcaacatagatttccatttgt 163  Q
    ||| ||| ||||||||||||||| ||||||||||  |||||||    
T  16132634 tgtctct-gattaaatcaaaattaaacatagattctcatttgt 16132675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 157 - 247
Target Start/End: Complemental strand, 3120328 - 3120238
Alignment:
Q  157 catttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 247  Q
    |||||||||||||||||| |||| || |||||||  ||||||| ||||||||||||||| | |||||||| ||| ||||| ||||||||||    
T  3120328 catttgtgcactaagattaaaatacctcttaataaattgtatgtggactgatttgtaataaagtaaagttaagtcttagaatggtccacca 3120238  T

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Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 149
Target Start/End: Original strand, 421442 - 421579
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| ||||||||||  |||||||||||||||  ||  ||| ||| ||||||  || |||||||||||| ||  || | |||  ||||||||| |||||     
T  421442 atgatcaatcattgaacatttgtgtatttaatgtatgtcatgtcaaattatacagtttattgcacatttacttatacgatgttccattatatctttacta 421541  T
Q  112 attgcaattgtgttctagattaaatcaaaattcaacat 149  Q
    ||||||||||||| || ||||||||||||||| |||||    
T  421542 attgcaattgtgtccttgattaaatcaaaattaaacat 421579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 28012123 - 28012216
Alignment:
Q  20 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttat 113  Q
    |||||||||||||||||||||||| |||  || || | |||||||||| |||||||||||| ||| |||| ||||  | |||||| ||||||||    
T  28012123 tcattgagtatttgtgtatttaatgcatgtcacattaaattatatggtgtattgcacatttgctcctaagatgtgctactatatctttacttat 28012216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 43579463 - 43579515
Alignment:
Q  145 aacatagatttccatttgtgcactaagattgaaattccccttaatattttgta 197  Q
    ||||||||||   |||||||||||||||||||||||| |||||||||||||||    
T  43579463 aacatagattcttatttgtgcactaagattgaaattctccttaatattttgta 43579515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 422205 - 422264
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 244  Q
    ||||||||||||||||||||| | ||||||| | ||||||||||||  ||||||||||||    
T  422205 ttaatattttgtatgaggactaagttgtaataaagtaaagtttagtcgtagagtggtcca 422264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 21263950 - 21263907
Alignment:
Q  106 ttacttattgcaattgtgttctagattaaatcaaaattcaacat 149  Q
    ||||||||||||||||||| || ||||||||||||||| |||||    
T  21263950 ttacttattgcaattgtgtccttgattaaatcaaaattaaacat 21263907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 17695930 - 17695870
Alignment:
Q  88 aggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaaca 148  Q
    ||||||||||||||| | |||||||||| ||||| ||  | ||||||||||||||| ||||    
T  17695930 aggtgtgtcattataactttacttattgtaattgagtctttgattaaatcaaaattaaaca 17695870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 8e-73; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 41643926 - 41644160
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    ||||||||||| ||||||||||||||| |||  ||  ||| |||||||||| ||||||||||||  || ||||||||||||||||||| |||||||||||    
T  41643926 caatcattgagcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcacatttgatcataaggtgtgtcattatatctttacttattgc 41644025  T
Q  117 aattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaata-ttttgtatgaggactgatttgtaat 215  Q
    |||||| | |  ||||||||||||||| ||||||| ||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41644026 aattgtatccctgattaaatcaaaattaaacatagtttctcatttgtgcactaagattgaaattccccttaatatttttgtatgaggactgatttgtaat 41644125  T
Q  216 gaggtaaagtttagttttagagtggtccaccagca 250  Q
     ||||| ||||||||||||||||||||||||||||    
T  41644126 aaggtagagtttagttttagagtggtccaccagca 41644160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 15650902 - 15651131
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    |||||||| | ||||||||||||||||||||| ||  | | |||||||||| |||| ||||||| | | ||||||||||||||||||| |||||||||||    
T  15650902 caatcattaaatatttgtgtatttaatccatatcacgtaagattatatggtgtatttcacatttgcccataaggtgtgtcattatatctttacttattgc 15651001  T
Q  117 aattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatg 216  Q
    ||||||||||  ||||||||||||||| |||||||| |  |||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||     
T  15651002 aattgtgttcctgattaaatcaaaattaaacatagaatctcatttgtgcactaaaattgaaattctcctaaatattttgtatgaggactgatttgtaata 15651101  T
Q  217 aggtaaagtttagttttagagtggtccacc 246  Q
    | |||||||||| |||||||||||||||||    
T  15651102 aagtaaagtttaattttagagtggtccacc 15651131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 6177829 - 6178058
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    ||||||||||| ||||||||||||||| |||  ||  ||| |||||||||| |||||| ||||| | | |||||| |||||||||||  ||||||||| |    
T  6177829 caatcattgagcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcgcatttgcccataaggtatgtcattatatatttacttattcc 6177928  T
Q  117 aattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatg 216  Q
    |||||||| |  ||||||||||||||  ||||||||||  |||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||     
T  6177929 aattgtgtccctgattaaatcaaaata-aacatagattctcatttgtgcactaagattgaaatttcccttaatattttgtacgatgactgatttgtaata 6178027  T
Q  217 aggtaaagtttagttttagagtggtccacca 247  Q
    ||||||||||||||| |||||||||||||||    
T  6178028 aggtaaagtttagttctagagtggtccacca 6178058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 18059356 - 18059118
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    |||| ||||| |||||||||||||||| |||  ||| ||| |||||||||| ||||||| ||||   | ||| |||||| |||||||| |||||||||||    
T  18059356 caattattgaatatttgtgtatttaattcatgtcatgtcagattatatggtgtattgcatatttatccataatgtgtgttattatatctttacttattgc 18059257  T
Q  117 aattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatg 216  Q
    |||||||| || ||||| || |||||| || |||||||  | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
T  18059256 aattgtgtccttgattagattaaaattaaatatagattctcgtttgtgcactaagattgaaattccccttaatattttgtatgatgactgatttgtaaca 18059157  T
Q  217 aggtaaagtttagttttagagtggtccaccagcagcaca 255  Q
    |||||||||||||||||||||||||| |  |||||||||    
T  18059156 aggtaaagtttagttttagagtggtctattagcagcaca 18059118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 27139014 - 27138783
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    ||||||||||  ||||||||||| |||||||  ||  ||| |||||| ||| ||||||| |||| | | ||| ||||||||||||||| ||||   ||||    
T  27139014 caatcattgatcatttgtgtatt-aatccatgtcacgtcagattatacggtgtattgcatatttgcccataaagtgtgtcattatatctttacgggttgc 27138916  T
Q  117 aattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatg 216  Q
    |||||||| |  ||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||     
T  27138915 aattgtgtccctgattaaatcaaaattaaacatagattcccatttgtgcactaagattgaaattcaccttaatattttgcatgaggacttatttgtaata 27138816  T
Q  217 aggtaaagtttagttttagagtggtccaccagc 249  Q
    ||||||| |||| ||||||||| ||||| ||||    
T  27138815 aggtaaaatttaattttagagtagtccatcagc 27138783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 110 - 251
Target Start/End: Complemental strand, 18947511 - 18947370
Alignment:
Q  110 ttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatt 209  Q
    |||| |||||||||| |  ||||||||||||| | ||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18947511 ttatagcaattgtgtccctgattaaatcaaaagtaaacatagattctcatttgtgcattaagattgaaattccccttaatattttgtatgaggactgatt 18947412  T
Q  210 tgtaatgaggtaaagtttagttttagagtggtccaccagcag 251  Q
    |||||| ||||||||||||||||||||||||| |||||||||    
T  18947411 tgtaataaggtaaagtttagttttagagtggtacaccagcag 18947370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 91 - 251
Target Start/End: Complemental strand, 39788530 - 39788370
Alignment:
Q  91 tgtgtcattatatccttacttattgcaattgtgt-tctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaat 189  Q
    |||||||||||||  ||||||| ||||||| ||| ||| | ||||||||||||| ||||||||||   ||||||||||||| ||||||||||||||||||    
T  39788530 tgtgtcattatattgttacttactgcaattatgtctctgg-ttaaatcaaaattaaacatagattctgatttgtgcactaaaattgaaattccccttaat 39788432  T
Q  190 attttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagcag 251  Q
    |||| ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  39788431 atttcgtatgagaactgatttgtaataaggtaaagtttatttttagagtggtccaccagcag 39788370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 18779395 - 18779179
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctct--taaggtgtgtcattatatccttacttatt 114  Q
    ||||||||||| ||||||||||||||| |||  || |||| |||||||||| |||||||||||| |  |  ||| |||||| ||| |||| |||||||||    
T  18779395 caatcattgagcatttgtgtatttaattcatgtcacatcagattatatggtttattgcacatttgccataataaagtgtgttattttatctttacttatt 18779296  T
Q  115 gcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaa 214  Q
    ||||||||||||  |||||||||||| || ||||||||||  |||||||||||||||||||||||| ||        ||| ||||| |||||||||||||    
T  18779295 gcaattgtgttcctgattaaatcaaagttaaacatagattctcatttgtgcactaagattgaaatttcc--------tttatatgacgactgatttgtaa 18779204  T
Q  215 tgaggtaaagtttagttttagagtg 239  Q
    | |||||||||||||||||||||||    
T  18779203 taaggtaaagtttagttttagagtg 18779179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 34441920 - 34441729
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| |||| ||||| |||||||||||||||| |||  ||  ||  |||||||||| |||||||||||| | | |||| |||||| ||||||| ||||||    
T  34441920 atgaccaattattgaatatttgtgtatttaattcatgtcacgtc--attatatggtgtattgcacatttgcccataagatgtgtcgttatatctttactt 34441823  T
Q  112 attgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactg 206  Q
    ||||||||||||| |  ||||||||||||||| ||||||||||  |||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  34441822 attgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgtgcactaaaattgaaattcccctt-atattttgtatgaggactg 34441729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 93 - 251
Target Start/End: Complemental strand, 38250052 - 38249898
Alignment:
Q  93 tgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatatt 192  Q
    |||||||||||| ||||||||||||||||||| |  ||||||||||||||| | ||  |||| | ||||| || ||||||||||||||||||||||||||    
T  38250052 tgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaatca--gattccaatttgcgctctaagattgaaattccccttaatatt 38249955  T
Q  193 ttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagcag 251  Q
      ||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||    
T  38249954 --gtatgaggactgatttgtaacaaggtaaaatttagttttagagtggtccaccagcag 38249898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 41713213 - 41713445
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| |||||||||| ||||| |||||||||| |||  ||  ||||  |||||||| | || ||||||| | | |||| |||||||||||||   |||||    
T  41713213 atgaccaatcattgaatatttatgtatttaattcatgtcacgtcat--tatatggtgtgttacacatttgcccataagatgtgtcattatatgtatactt 41713310  T
Q  112 attgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttg 211  Q
    ||| ||||||| | |   |||||||||||||| ||||||||||  || ||||||||||| | |||||||||||||| |||||||| ||||||||||||||    
T  41713311 attacaattgtttccctaattaaatcaaaattaaacatagattctcacttgtgcactaaaaatgaaattcccctta-tattttgtgtgaggactgatttg 41713409  T
Q  212 taatgaggtaaagtttagttttagagtggtccacca 247  Q
    |||| || ||||  ||||||||||||||||||||||    
T  41713410 taataagataaaacttagttttagagtggtccacca 41713445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 146 - 245
Target Start/End: Complemental strand, 17244935 - 17244836
Alignment:
Q  146 acatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccac 245  Q
    |||||||||  ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  17244935 acatagattctcatttgtgcactaagattgaaattttccttaatattttgtatgaggagtgatttgtaataaggtaaagtttagttttagagtggtccac 17244836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 19093640 - 19093734
Alignment:
Q  149 tagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcc 243  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  19093640 tagattcccatttgtgcagtaagattgaaattctccttaatattttgtaagaggactgatttgtaataaggtaaagtttagttttagagtggtcc 19093734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 19073412 - 19073640
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctct-taaggtgtgtcattatatccttacttattg 115  Q
    ||||||||||| |||||||||||||||||||  ||  ||| |||||||||| |||| |||||||  ||| ||||||||||||||||||  ||||||||||    
T  19073412 caatcattgagaatttgtgtatttaatccatgtcacgtcagattatatggtgtattccacatttg-tctataaggtgtgtcattatatatttacttattg 19073510  T
Q  116 caattgtgttctagattaaatcaaaattcaacatagatt-tccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaa 214  Q
     |||||||| |  |||||||||||| || |||||||||| ||  ||| |||||      ||||||| || |||||||||| || ||||||||||||||||    
T  19073511 aaattgtgtccctgattaaatcaaagttaaacatagattctcattttttgcac------tgaaatt-cctttaatattttatacgaggactgatttgtaa 19073603  T
Q  215 tgaggtaaagtttagttttagagtggtccaccagcag 251  Q
    | ||||||| |||||||||| |||||| |||||||||    
T  19073604 taaggtaaaatttagttttaaagtggttcaccagcag 19073640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 42005438 - 42005667
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| ||| |||||| ||||||| ||||||||||||  ||  ||  |||||||||| ||||||||| || | | ||||||||||||||| ||| ||||||    
T  42005438 atgatcaaccattgaatatttgtttatttaatccatgtcacgtc--attatatggtgtattgcaca-ttgcccataaggtgtgtcattacatctttactt 42005534  T
Q  112 attgcaattgtgt-tctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgattt 210  Q
    |||| ||||||||  |  ||||||||||||||| ||||||||||  ||||||||||||||||||||||||  |||| ||||||||||||||  |||||||    
T  42005535 attgtaattgtgtcccctgattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattttcctt-atattttgtatgagagctgattt 42005633  T
Q  211 gtaatgaggtaaagtttagttttagagtggtcca 244  Q
    ||||| |  ||||  ||| ||||| |||||||||    
T  42005634 gtaataaaataaaacttaattttaaagtggtcca 42005667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 18514597 - 18514493
Alignment:
Q  146 acatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccac 245  Q
    |||||||||  |||||||||||||||||||||||| || |||||||||||||||| || |||||| |||| | |||||||| ||| ||| ||||||||||    
T  18514597 acatagattctcatttgtgcactaagattgaaatttccattaatattttgtatgatgattgatttataataaagtaaagttcagtcttatagtggtccac 18514498  T
Q  246 cagca 250  Q
    |||||    
T  18514497 cagca 18514493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 34441728 - 34441644
Alignment:
Q  162 gtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 247  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| || ||||| ||||||||| |||| |||||||    
T  34441728 gtgcactaaaattgaaattcccctta-tattttgtatgaggactgatttgtaataagataaagcttagttttaaagtgatccacca 34441644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 149
Target Start/End: Original strand, 30844897 - 30845033
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| ||||||||||| |||  ||||||||||||||  ||  ||| |||||||| ||||||||||||||   | |||| |||||||||| ||| ||||||    
T  30844897 atgatcaatcattgagcattc-tgtatttaatccatgtcacgtcagattatatgatatattgcacatttgtccataagatgtgtcattaaatctttactt 30844995  T
Q  112 attgcaattgtgt-tctagattaaatcaaaattcaacat 149  Q
    |||||| ||| || |||| |||||||||||||| |||||    
T  30844996 attgcatttgagtctcta-attaaatcaaaattaaacat 30845033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 27355193 - 27355254
Alignment:
Q  188 atattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagc 249  Q
    ||||||||||| | |||||||||||| |||   |||||||||| ||||||||||||||||||    
T  27355193 atattttgtattatgactgatttgtagtgaatgaaagtttagtcttagagtggtccaccagc 27355254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 40912516 - 40912471
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagt 230  Q
    ||||||||||||||||||||||||||||||| | ||||| ||||||    
T  40912516 ttaatattttgtatgaggactgatttgtaataaagtaaaatttagt 40912471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 142
Target Start/End: Original strand, 58097 - 58204
Alignment:
Q  34 tgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagatta 133  Q
    |||||||||| |||  || |||| |||||||||| ||||||||||||  || || |||||| ||  ||||  ||||||||||||||||||| || |||||    
T  58097 tgtatttaattcatgtcagatcaaattatatggtgtattgcacatttgttcatacggtgtgccacaatatttttacttattgcaattgtgtcct-gatta 58195  T
Q  134 aatcaaaat 142  Q
    ||| |||||    
T  58196 aattaaaat 58204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 32652621 - 32652664
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaatgaggtaaagttta 228  Q
    ||||||||||||||||||||||||||||||| | ||||| ||||    
T  32652621 ttaatattttgtatgaggactgatttgtaataaagtaaaattta 32652664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 45411976 - 45411917
Alignment:
Q  188 atattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 247  Q
    ||||||||||| | |||||||||||| ||| | ||| |||||| ||||||||||||||||    
T  45411976 atattttgtattatgactgatttgtagtgaaggaaaatttagtcttagagtggtccacca 45411917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 215
Target Start/End: Original strand, 7565511 - 7565541
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaat 215  Q
    |||||||||||||||||||||||||||||||    
T  7565511 ttaatattttgtatgaggactgatttgtaat 7565541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 7553480 - 7553540
Alignment:
Q  89 ggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacat 149  Q
    ||||| ||| |||||  |||||||||||||||||||  | ||||||||||||||| |||||    
T  7553480 ggtgtatcactatatttttacttattgcaattgtgtcattgattaaatcaaaattaaacat 7553540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 22963453 - 22963545
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatc 104  Q
    |||| |||||||| ||  ||||||||||||||| || | |  ||| |||||||||| || | || ||||  ||||||||||||||||||||||    
T  22963453 atgaccaatcatttagcttttgtgtatttaatcaatgcaacgtcagattatatggtgtactacatatttgttcttaaggtgtgtcattatatc 22963545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 2266850 - 2266617
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctct-taaggtgtgtcattatatccttacttattg 115  Q
    ||||||||||| ||||||||||||||||||| |||  | | |||| ||||| |||| |||||||  ||| ||||||||||||||||||| ||||||||||    
T  2266850 caatcattgagcatttgtgtatttaatccatgccacgttagattacatggtgtattacacatttg-tctataaggtgtgtcattatatctttacttattg 2266752  T
Q  116 caattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaat 215  Q
    ||| | ||   | ||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2266751 caactatgactttgattaaatcaaaattaaacatagattcccatttgtgcactaagattgaaatttcccttaatattttgtatgaggactgatttgtaat 2266652  T
Q  216 gaggtaaagtttagttttagagtggtccaccagcag 251  Q
     | |||||||||| |||||||| |||||||||||||    
T  2266651 aatgtaaagttta-ttttagaggggtccaccagcag 2266617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 90 - 251
Target Start/End: Original strand, 2570605 - 2570766
Alignment:
Q  90 gtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaat 189  Q
    ||||||||||||||| ||| ||||||||||||||| |   |||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||    
T  2570605 gtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacatagatttccatttgtgcactaagattgaaattcaccttaat 2570704  T
Q  190 attttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagcag 251  Q
    ||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  2570705 attttgtttgaggaatgatttgtaataaggtaaagtttagttttagagtggtccaccagcag 2570766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 9743637 - 9743875
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| |||| |||||  |||||||||||||||||||   |  |||||||||||||| |||||||||||||  | ||| |||| |||||| ||| ||||||    
T  9743637 atgaccaattattgaacatttgtgtatttaatccatgtaacgtcatattatatggtgtattgcacatttttccataaagtgtttcattaaatctttactt 9743736  T
Q  112 attgcaattgtgttctagattaaatcaaaattcaacatagat-ttc-catttgtgcactaagattgaaattccccttaatattttgtatgaggactgatt 209  Q
    ||||||||| |||||| ||||||||||||||| |||||| || ||| |||||||||||||||||| |  |||||||||||||||||||||||||||| ||    
T  9743737 attgcaattatgttcttgattaaatcaaaattaaacatatatattctcatttgtgcactaagatttatgttccccttaatattttgtatgaggactggtt 9743836  T
Q  210 tgtaatgaggtaaagtttagttttagagtggtccaccag 248  Q
    |||||| | ||||| ||||||||||||||| ||||||||    
T  9743837 tgtaataatgtaaaatttagttttagagtgatccaccag 9743875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 86 - 247
Target Start/End: Original strand, 17612457 - 17612618
Alignment:
Q  86 taaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattcccct 185  Q
    ||||||||||||||  ||| ||||||||||||||| ||| |||||||||||||||||| |||||||||| |||||||||  |||||||||||||||||||    
T  17612457 taaggtgtgtcattgcatctttacttattgcaattatgtcctagattaaatcaaaattaaacatagattgccatttgtgtgctaagattgaaattcccct 17612556  T
Q  186 taatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 247  Q
    | ||||||| |||||||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  17612557 ttatattttctatgaggactaatttgtaataaggtaaaatttagttttagagtggtccacca 17612618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 1012351 - 1012575
Alignment:
Q  18 aatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgca 117  Q
    |||||| |||||||||||||||||||||||  ||  ||| |||||||||| |||||||||||| | | ||||||||||||||||||| ||||||||||||    
T  1012351 aatcatcgagtatttgtgtatttaatccatgtcacgtcagattatatggtgtattgcacatttgcccataaggtgtgtcattatatctttacttattgca 1012450  T
Q  118 a-ttgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatg 216  Q
    | |||||| |  ||||||||||||||| |||||||||| | ||||||||||||| ||||||||||||||          ||||| || |||||||||||     
T  1012451 atttgtgtccctgattaaatcaaaattaaacatagattcctatttgtgcactaaaattgaaattcccct----------tatgaagattgatttgtaata 1012540  T
Q  217 aggtaaagtttagttttagagtggtccaccagcag 251  Q
    ||||||| |||||||||||| |||||||| |||||    
T  1012541 aggtaaaatttagttttagaatggtccactagcag 1012575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 88 - 247
Target Start/End: Original strand, 2707998 - 2708156
Alignment:
Q  88 aggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattcccctta 187  Q
    ||||||||||||||||| |||||||||||||||| || |  ||||||||||||||| ||||| ||||  ||||||||||||||||||||||||||||||     
T  2707998 aggtgtgtcattatatctttacttattgcaattgagtccctgattaaatcaaaattaaacatggattctcatttgtgcactaagattgaaattcccctt- 2708096  T
Q  188 atattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 247  Q
     |||||||||||||| |||||||||||| || ||||| ||||||||||||||||||||||    
T  2708097 ctattttgtatgagggctgatttgtaataagataaagcttagttttagagtggtccacca 2708156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 146 - 251
Target Start/End: Original strand, 49878858 - 49878963
Alignment:
Q  146 acatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccac 245  Q
    ||||| |||| |||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||| ||||||||    
T  49878858 acataaattttcatttgtgcattaagattgaaatttcccttaatattttgtatgatgactgatttataataaggtaaagtttagtcttagaatggtccac 49878957  T
Q  246 cagcag 251  Q
    ||||||    
T  49878958 cagcag 49878963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 54995781 - 54995613
Alignment:
Q  29 atttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttcta 128  Q
    ||||| |||||||||||||  ||| |||  ||||||| | ||||||||||||   | ||| ||||||| ||||||| ||||||||||||||||||| |      
T  54995781 atttgcgtatttaatccatgtcatgtcaggttatatgatgtattgcacatttgtccataatgtgtgtctttatatctttacttattgcaattgtgtccct 54995682  T
Q  129 gattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgta 197  Q
    ||||||||||||||| || |||||||   ||||||| ||||||||||||||||||| ||||||||||||    
T  54995681 gattaaatcaaaattaaatatagattcttatttgtgtactaagattgaaattccccctaatattttgta 54995613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 22756924 - 22756794
Alignment:
Q  18 aatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgca 117  Q
    |||||||||||||||||||||||||| ||| ||| |||| |||||| ||| |||||||||||| ||| ||  | ||| || |||||| ||||||||| ||    
T  22756924 aatcattgagtatttgtgtatttaatgcatgccacatcaaattatacggtgtattgcacatttgctcatacagcgtgccactatatctttacttattcca 22756825  T
Q  118 attgtgttctagattaaatcaaaattcaacat 149  Q
    |||| || || |||| |||||||||| |||||    
T  22756824 attgcgtcct-gattgaatcaaaattaaacat 22756794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 22729775 - 22729896
Alignment:
Q  27 gtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttc 126  Q
    ||||||||||||||||| ||| ||| |||| |||||| ||| |||||||||||| ||| || |||||| || |||||| | ||||||||||| ||||| |    
T  22729775 gtatttgtgtatttaatgcatgccacatcaaattatacggtgtattgcacatttgctcatatggtgtgccactatatcttaacttattgcaactgtgtcc 22729874  T
Q  127 tagattaaatcaaaattcaacat 149  Q
    | |||| |||||||||| |||||    
T  22729875 t-gattgaatcaaaattaaacat 22729896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 51204632 - 51204724
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatc 104  Q
    |||| |||| ||||||  ||||||||||||||||||  || |||| ||||||||||  ||||||||||| ||  |||||||||||||||||||    
T  51204632 atgatcaattattgagcttttgtgtatttaatccatgtcacatcagattatatggtgcattgcacatttgctaataaggtgtgtcattatatc 51204724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 28293227 - 28293124
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    ||||||||||||||   |||||||||||||| | | |||| |||||||| | |||||||||||| |   |||| ||||| |||||||| |||||||||||    
T  28293227 caatcattgagtatcaatgtatttaatccatgctacatcaaattatatgatgtattgcacatttacctataagatgtgttattatatctttacttattgc 28293128  T
Q  117 aatt 120  Q
    ||||    
T  28293127 aatt 28293124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 54995068 - 54995010
Alignment:
Q  189 tattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 247  Q
    ||||||||||||||||||||||||||| | |||||  ||||||||||||||||| ||||    
T  54995068 tattttgtatgaggactgatttgtaataaagtaaaagttagttttagagtggtcgacca 54995010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 28292486 - 28292430
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggt 241  Q
    ||||||||||||||||  | ||||||||||| |||||||||||||| ||||||||||    
T  28292486 ttaatattttgtatgattattgatttgtaataaggtaaagtttagtcttagagtggt 28292430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 33036155 - 33036064
Alignment:
Q  58 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgt-tctagattaaatcaaaattcaacat 149  Q
    ||||||| || |||||||||||| |   |||||| |||||||||||| |||||||||||||||| || ||| ||||||||||||||| |||||    
T  33036155 attatattgtgtattgcacatttgcctataaggtttgtcattatatctttacttattgcaattgagtctct-gattaaatcaaaattaaacat 33036064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 51959922 - 51959990
Alignment:
Q  36 tatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatc 104  Q
    ||||||||| ||| ||  ||| |||||||||| |||||||||||| | | ||| |||||||||||||||    
T  51959922 tatttaatctatatcacgtcagattatatggtgtattgcacatttgcccataaagtgtgtcattatatc 51959990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 86 - 250
Target Start/End: Original strand, 3038529 - 3038692
Alignment:
Q  86 taaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattcccct 185  Q
    ||||||||||||||||||| ||||||||||||||||||| |  ||||||||||||||| ||| |||||| |||||| |||||||||||||||||| ||||    
T  3038529 taaggtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaacttagattcccatttatgcactaagattgaaatt-ccct 3038627  T
Q  186 taatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagca 250  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||    
T  3038628 taatattttgtatgatgattgatttgtaataaggtaaagtttagttttagagtggtccaccagca 3038692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 4108911 - 4108679
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| |||||||||| ||||||||||||||||  || |||  ||  |||||||||| |||||||||||| | | ||||||||||| ||||||| ||||||    
T  4108911 atgaccaatcattgaatatttgtgtatttaattaatgccacgtc--attatatggtgtattgcacatttgcccataaggtgtgtcgttatatctttactt 4108814  T
Q  112 attgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttg 211  Q
    ||||||||||||| |  ||||||||||||||| ||||||||||  |||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||    
T  4108813 attgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgtgcactaaaattgaaattcccctt-atattttgtatgaagactgttttg 4108715  T
Q  212 taatgaggtaaagtttagttttagagtggtccacca 247  Q
    |||| || ||||| ||||||||| ||||||||||||    
T  4108714 taataagataaagcttagttttaaagtggtccacca 4108679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 86 - 234
Target Start/End: Complemental strand, 6267430 - 6267282
Alignment:
Q  86 taaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattcccct 185  Q
    |||||||||| |||||||| ||||||||||||||| ||| || ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  6267430 taaggtgtgttattatatctttacttattgcaattatgtccttgattaaatcaaaattaaacatagatttgcatttgtgcactaagattgaaattcccct 6267331  T
Q  186 taatattttgtatgaggactgatttgtaatgaggtaaagtttagtttta 234  Q
    ||||||||||||||| |||||||||||||| || |||||||||||||||    
T  6267330 taatattttgtatgatgactgatttgtaataagataaagtttagtttta 6267282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 7290814 - 7290997
Alignment:
Q  58 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttcc 157  Q
    |||||||||  ||||  |||||||| | |||| ||| | |||||||| ||||||||||||||||| |||  |||||||||||||||  |||||||||| |    
T  7290814 attatatggcgtattagacattttcccataagatgtattattatatctttacttattgcaattgtattcctgattaaatcaaaattagacatagattttc 7290913  T
Q  158 atttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggt 241  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||    
T  7290914 atttgtgcactaagattgaaattcctcttaatattttgtatgaggattgatttgtaataagataaagtttagttttagagtggt 7290997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 58 - 248
Target Start/End: Complemental strand, 18756620 - 18756430
Alignment:
Q  58 attatatggtatattgcacattttctct-taaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttc 156  Q
    |||||||||| ||||||||||||  ||| |||| |||||||||||||| ||||||||||||||||||| |  |||| ||| |||| | | |||| ||| |    
T  18756620 attatatggtctattgcacatttg-tctataagatgtgtcattatatctttacttattgcaattgtgtccatgattcaattaaaagtaagcatatattcc 18756522  T
Q  157 catttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccag 248  Q
    | ||||||||||||||||  |||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||    
T  18756521 cctttgtgcactaagattttaattccccttaatattttgtatgaggacagatttgtaataaggtaaagattagttttagagtggtccaccag 18756430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 23176690 - 23176554
Alignment:
Q  107 tacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactg 206  Q
    |||||||||||||||||| |  ||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||     
T  23176690 tacttattgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattcccctt-atattttgtatgaggacta 23176592  T
Q  207 atttgtaatgaggtaaagtttagttttagagtggtcca 244  Q
    ||||||||| || ||||| |||||||||||||||||||    
T  23176591 atttgtaataagataaagcttagttttagagtggtcca 23176554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 30651108 - 30651003
Alignment:
Q  146 acatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccac 245  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||||| |||||| |||||||||||||| |||||||||||| | ||||||||||||||    
T  30651108 acatagattttcatttgtgcactaagattaaaattcctcttaatatttagtatgatgactgatttgtaataaggtaaagtttaatcttagagtggtccac 30651009  T
Q  246 cagcag 251  Q
    ||||||    
T  30651008 cagcag 30651003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 28220898 - 28220797
Alignment:
Q  145 aacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 244  Q
    ||||||||||  | ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| |||||||||||||||||||    
T  28220898 aacatagattctcttttgtacactaagattgaaattcccctta-tattttgtatgaggactgatttgtaataagataaagcttagttttagagtggtcca 28220800  T
Q  245 cca 247  Q
    |||    
T  28220799 cca 28220797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 34685969 - 34686063
Alignment:
Q  157 catttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagcag 251  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| ||| ||||    
T  34685969 catttgtgcactaagactgaaatttcccttaatattttgtatgaggactgatttgtaataaagtaaagtttagtcttagagtggtctaccggcag 34686063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 34463472 - 34463575
Alignment:
Q  19 atcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaa 118  Q
    ||||||||  |||| ||||||||||||||||||  ||| ||||||| || |||||||| |||   | || |||||||||||||||| |||||||||| ||    
T  34463472 atcattgaaaatttatgtatttaatccataccacttcacattatattgtgtattgcacgtttgaacatatggtgtgtcattatatctttacttattgtaa 34463571  T
Q  119 ttgt 122  Q
    ||||    
T  34463572 ttgt 34463575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 35735933 - 35735844
Alignment:
Q  58 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaaca 148  Q
    |||||||||| |||||||||||| ||| ||||||||| || |||||| |||| |||| ||||||||| || |||||||| |||||| ||||    
T  35735933 attatatggtgtattgcacatttgctcataaggtgtgccactatatctttacctattacaattgtgtcct-gattaaataaaaattaaaca 35735844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 30381067 - 30381002
Alignment:
Q  58 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtg 123  Q
    ||||||| |||||||||| |||| ||  |||| |||||||||||||| |||||||||  |||||||    
T  30381067 attatatcgtatattgcatatttacttataagatgtgtcattatatctttacttattataattgtg 30381002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 7e-55; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 11084151 - 11083924
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| |||||||||| ||||| ||||||||||||||  ||  ||  |||||||||| |||| ||||||| | | ||||||||||||||||||| ||||||    
T  11084151 atgaccaatcattgaatatttatgtatttaatccatgtcacgtc--attatatggtgtattacacatttgcccataaggtgtgtcattatatctttactt 11084054  T
Q  112 attgcaattgtgt-tctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgattt 210  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||  ||||||| || ||||||||||||||||||| ||||||||||| |||||||||||    
T  11084053 attgcaattgtgtctct-gattaaatcaaaattaaacatagattctcatttgttcattaagattgaaattcccctt-atattttgtataaggactgattt 11083956  T
Q  211 gtaatgaggtaaagtttagttttagagtggtc 242  Q
    ||||| || ||||| |||||||||||||||||    
T  11083955 gtaataagataaagcttagttttagagtggtc 11083924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 53 - 250
Target Start/End: Original strand, 34993921 - 34994118
Alignment:
Q  53 atcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacataga 152  Q
    |||| |||||||||| ||||||||||||   | ||| || ||| |||||||| ||||||||| ||||||||| || ||||||||||||||| ||||||||    
T  34993921 atcagattatatggtgtattgcacatttgtccataatgtatgttattatatctttacttattacaattgtgtccttgattaaatcaaaattaaacataga 34994020  T
Q  153 tttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagca 250  Q
    ||  ||||| |||||||||||||||||||||||||||||||| ||| || ||||||||||||| || || | |||||||||||| | |||||||||||    
T  34994021 ttctcatttatgcactaagattgaaattccccttaatattttatataagaactgatttgtaataagatacaatttagttttagaatagtccaccagca 34994118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 30341124 - 30341276
Alignment:
Q  63 atggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttg 162  Q
    ||||| ||||| |||||| | | |||| |||||||||||||| | |||||||||||||||||||  ||||||||||||||| || ||||||| ||||| |    
T  30341124 atggtgtattgtacatttgcccataagttgtgtcattatatcttcacttattgcaattgtgttcatgattaaatcaaaattaaatatagattcccattag 30341223  T
Q  163 tgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30341224 tgcactaagattgaaattccccttaatattttgtatgaggactaatttgtaat 30341276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 19631798 - 19632035
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| ||||||||||  |||||||||||||||||||  ||  | | |||||||||| |||||||||||| |   |||||||| |||||||||| ||||||    
T  19631798 atgaccaatcattgaacatttgtgtatttaatccatgtcacgttagattatatggtgtattgcacatttgcctataaggtgtttcattatatctttactt 19631897  T
Q  112 attgcaattgtgt-tctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgattt 210  Q
    |||||||| |||| ||| ||||||||||||||| || ||| |||  ||||||||||||||||||||||||||||| ||||||||||  |||||   |||     
T  19631898 attgcaatcgtgtctct-gattaaatcaaaattaaaaataaattctcatttgtgcactaagattgaaattcccctcaatattttgt--gaggatcaatta 19631994  T
Q  211 gtaatgaggtaaagtttagttttagagtggtccaccagcag 251  Q
     |||| |||||||  ||||||||||||||||||||||||||    
T  19631995 ataataaggtaaaacttagttttagagtggtccaccagcag 19632035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 130 - 250
Target Start/End: Original strand, 4104183 - 4104303
Alignment:
Q  130 attaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttag 229  Q
    |||||||||||||| |||||| ||| |||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||| ||| |||||||||    
T  4104183 attaaatcaaaattaaacataaattcccatttgtgcactaagattgaaattctccttaatattttgtatgaagattgatttgtaataaggcaaagtttag 4104282  T
Q  230 ttttagagtggtccaccagca 250  Q
    |||||||||||||||||||||    
T  4104283 ttttagagtggtccaccagca 4104303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 26301922 - 26301685
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| |||||||||| ||||| |||||||||| |||  ||  ||||  |||||| | ||||||| ||||   | |||| |||||||||||||| ||||||    
T  26301922 atgaccaatcattgaatatttatgtatttaattcatgtcacgtcat--tatatgatgtattgcatatttatccataagatgtgtcattatatctttactt 26301825  T
Q  112 attgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattcccctta---atattttgtatgaggactgat 208  Q
    ||||||||||||| |  ||||||||||||||| ||||||||||  |||||||| |||||||||||||||||| |||   |||||||||||||| ||||||    
T  26301824 attgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgtgtactaagattgaaattccctttatatatattttgtatgagaactgat 26301725  T
Q  209 ttgt-aatgaggtaaagtttagttttagagtggtccacca 247  Q
    |||| ||| || ||||  ||| ||||||||||| ||||||    
T  26301724 ttgtaaataagataaaacttaattttagagtggcccacca 26301685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 6613859 - 6613753
Alignment:
Q  145 aacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 244  Q
    ||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| |||| ||||||||| |||||||||||||    
T  6613859 aacatagattcttatttgtgcactaagattgaaattctccttaatattttgtatgaggattcatttgtaataaggtgaagtttagtcttagagtggtcca 6613760  T
Q  245 ccagcag 251  Q
    |||||||    
T  6613759 ccagcag 6613753  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 4487882 - 4487823
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 244  Q
    ||||| ||||||||||||||||||||||||| | ||||| |||||| ||| |||||||||    
T  4487882 ttaatgttttgtatgaggactgatttgtaataaagtaaaatttagtgttacagtggtcca 4487823  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 25441709 - 25441768
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 244  Q
    |||||||||||||||||||||||||||| || | ||||| |||||| ||| |||||||||    
T  25441709 ttaatattttgtatgaggactgatttgtgataaagtaaaatttagtgttacagtggtcca 25441768  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 4102919 - 4102864
Alignment:
Q  18 aatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattg 73  Q
    |||||||||  |||||||||||||||| || ||| ||||||||||||||| |||||    
T  4102919 aatcattgaacatttgtgtatttaatctatgccacatcatattatatggtgtattg 4102864  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 4488487 - 4488444
Alignment:
Q  106 ttacttattgcaattgtgttctagattaaatcaaaattcaacat 149  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||    
T  4488487 ttacttgttgcaattgtgttcttgattaaatcaaaattaaacat 4488444  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 3148971 - 3148918
Alignment:
Q  191 ttttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 244  Q
    |||| |||||| ||||||||||||| ||| ||||||||  ||||||||||||||    
T  3148971 ttttctatgagaactgatttgtaataaggaaaagtttaaatttagagtggtcca 3148918  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 4103034 - 4103070
Alignment:
Q  86 taaggtgtgtcattatatccttacttattgcaattgt 122  Q
    ||||||||||||||||||  |||||||||||||||||    
T  4103034 taaggtgtgtcattatatttttacttattgcaattgt 4103070  T

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Target: scaffold0200 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 24811 - 24582
Alignment:
Q  17 caatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc 116  Q
    ||||||||||| ||||||||||||||| |||  ||  ||| |||||||||| |||||| ||||| | | |||||| ||| |||||||  ||||||||| |    
T  24811 caatcattgagcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcgcatttgcccataaggtatgttattatatatttacttattcc 24712  T
Q  117 aattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatg 216  Q
    |||||||| |  ||||||||||||||  ||||||||||  |||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||     
T  24711 aattgtgtccctgattaaatcaaaata-aacatagattctcatttgtgcactaagattgaaatttcccttaatattttgtacgatgactgatttgtaata 24613  T
Q  217 aggtaaagtttagttttagagtggtccacca 247  Q
    ||||||||||||||| ||||||| |||||||    
T  24612 aggtaaagtttagttctagagtgatccacca 24582  T

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Target: scaffold0050 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 5645 - 5877
Alignment:
Q  18 aatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgca 117  Q
    |||||||||| ||||||||||||||| |||  ||| | | |||||||||| |||||||||||| |   ||||||||||||||||||  || |||||||||    
T  5645 aatcattgagcatttgtgtatttaattcatgtcatgttagattatatggtgtattgcacatttgcctataaggtgtgtcattatatatttccttattgca 5744  T
Q  118 attgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatga 217  Q
    ||| ||| |   |||||||||||||| ||||| ||||  ||||||| || |||||| ||||||  | ||||||||||||||||| |||||||| |||| |    
T  5745 attatgtccctcattaaatcaaaattaaacatggattcgcatttgttcattaagatcgaaatt-tctttaatattttgtatgagaactgatttataataa 5843  T
Q  218 ggtaaagtttagttttagagtggtccaccagcag 251  Q
    |||||||||||||||||||||||||||| |||||    
T  5844 ggtaaagtttagttttagagtggtccactagcag 5877  T

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Target: scaffold0312 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 9130 - 8993
Alignment:
Q  12 atgaacaatcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttactt 111  Q
    |||| ||||||||||  |||||||||||||||  ||  ||| ||| ||||||  || |||||||||||| ||  || | |||  ||||||||| |||||     
T  9130 atgatcaatcattgaacatttgtgtatttaatgtatgtcatgtcaaattatacagtttattgcacatttacttatacgatgttccattatatctttacta 9031  T
Q  112 attgcaattgtgttctagattaaatcaaaattcaacat 149  Q
    ||||||||||||| || ||||||||||||||| |||||    
T  9030 attgcaattgtgtccttgattaaatcaaaattaaacat 8993  T

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Target: scaffold0312; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 8367 - 8308
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 244  Q
    ||||||||||||||||||||| | ||||||| | ||||||||||||  ||||||||||||    
T  8367 ttaatattttgtatgaggactaagttgtaataaagtaaagtttagtcgtagagtggtcca 8308  T

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Target: scaffold0001 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 65992 - 66052
Alignment:
Q  185 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccac 245  Q
    ||||||||||||||||||||| |||| |||| |||||||||||||| ||| ||||||||||    
T  65992 ttaatattttgtatgaggactaatttataataaggtaaagtttagtgttaaagtggtccac 66052  T

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Target: scaffold0262 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 12091 - 12034
Alignment:
Q  86 taaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaatt 143  Q
    |||| |||||||||||||  |||||||||||||||||||||  |||||||||||||||    
T  12091 taagatgtgtcattatatatttacttattgcaattgtgttcctgattaaatcaaaatt 12034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 11495 - 11443
Alignment:
Q  189 tattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggt 241  Q
    ||||||||||||||||||||||||||| || |||| |||||| ||||||||||    
T  11495 tattttgtatgaggactgatttgtaataagataaaatttagtcttagagtggt 11443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 107955 - 108011
Alignment:
Q  191 ttttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 247  Q
    |||| ||||| |||||||||||||| ||| |||||||||  |||||||| |||||||    
T  107955 ttttctatgaagactgatttgtaataaggaaaagtttagacttagagtgatccacca 108011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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