View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_high_12 (Length: 486)
Name: NF16006_high_12
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 212 - 475
Target Start/End: Original strand, 25517614 - 25517876
Alignment:
| Q |
212 |
ttttgggtcgatttgcctgctttttatgtcgtgatttttgcatgttccattcatttcttcatgtacgtggttttttcttgttcatccatgatttttgttg |
311 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25517614 |
ttttgggtcgatttgcctgctttttatgtcatgatttttgcatgttccattcatttcttcatgtacgtggttttttcttgttcatccatgatttttgttg |
25517713 |
T |
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| Q |
312 |
ttaaaattgcttgtttatgttaaatgtaagacacttctcacattttgcagcaaaagtaatatttctcaaaagagatgtcattggcagattagcacttcat |
411 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25517714 |
ttaaatttgcttgtttatgttaaatgtaagacacttctcaca-tttgcagcaaaagtaatatttctcaaaagagatgtcattggcagattagcacttcat |
25517812 |
T |
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| Q |
412 |
acaccataattataaataatgaccaacttgttgtttttgcaacaagtgcaatatcaatcttcat |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25517813 |
acaccataattataaataatgaccaacttgttgtttttgcaacaagtgcaatatcaatcttcat |
25517876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 25517115 - 25517229
Alignment:
| Q |
18 |
taaatatgatagatggaataggtaacattcctcagtgaaattggttgctgatgcattagctgattactcatattttaccattcgctcctacaattttcaa |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25517115 |
taaatatgatagatggaataggtaacgttcctcagtgaaattggctgctgatacgttagctgattactcatattttaccattcgctcctacaattttcaa |
25517214 |
T |
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| Q |
118 |
attttatggtttatt |
132 |
Q |
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| T |
25517215 |
attttatggtttatt |
25517229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 25524981 - 25524869
Alignment:
| Q |
20 |
aatatgatagatggaataggtaacattcctcagtgaaattggttgctgatgcattagctgattactcatattttaccattcgctcctacaattttcaaat |
119 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||| || ||||||||| ||| ||||||||||||||||| |||||||| || |
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| T |
25524981 |
aatatgatagatggaacaggtaacattcctcagtgaaattggttgatgatgcgttgactgattactaataatttaccattcgctcctataattttcagat |
25524882 |
T |
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| Q |
120 |
tttatggtttatt |
132 |
Q |
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||||||||||||| |
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| T |
25524881 |
tttatggtttatt |
25524869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 25540518 - 25540404
Alignment:
| Q |
18 |
taaatatgatagatggaataggtaacattcctcagtgaaattggttgctgatgcattagctgattactcatattttaccattcgctcctacaattttcaa |
117 |
Q |
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||||| |||||||||||| | ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25540518 |
taaatttgatagatggaacaagtaacgttcctcagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcag |
25540419 |
T |
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| Q |
118 |
attttatggtttatt |
132 |
Q |
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|||||| | |||||| |
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| T |
25540418 |
attttaagatttatt |
25540404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 212 - 301
Target Start/End: Complemental strand, 25539963 - 25539874
Alignment:
| Q |
212 |
ttttgggtcgatttgcctgctttttatgtcgtgatttttgcatgttccattcatttcttcatgtacgtggttttttcttgttcatccatg |
301 |
Q |
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|||| ||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25539963 |
ttttaggtcgatttgcttgctttctttgtcatgatttttgcatgttccattcatttcttcatgtacgtggttttttcttgtttatccatg |
25539874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 295 - 377
Target Start/End: Complemental strand, 25539854 - 25539772
Alignment:
| Q |
295 |
atccatgattttt-gttgttaaaattgcttgtttatgttaaa-tgtaagacacttctcacattttgcagcaaaagtaatatttct |
377 |
Q |
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||||||||||||| |||||||| || ||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| |
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| T |
25539854 |
atccatgattttttgttgttaatttt-cttgtttatgttaaaatgtaagacacttatcacattt-gcagcaaaagtaatatttct |
25539772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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