View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16006_high_20 (Length: 376)
Name: NF16006_high_20
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_high_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 9464056 - 9463818
Alignment:
| Q |
20 |
tctaaagagcttttttaatcaattacaaagattctattaaacacaattacaaattgtttataaaactaactcttcatggtttctacaattggaagttcca |
119 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9464056 |
tctaaagagctcttctaatctattacaaagattccattaaacacaattacaaatagtttataaaactaactcttcatggtttctacaatcggaagttcca |
9463957 |
T |
|
| Q |
120 |
tgtgaaagtggtaaaacaaatttgatagtgacactatataaaagatcttttttactactctttctctaaatgtaaaagatcttaatctcttactccaatt |
219 |
Q |
| |
|
||| ||| ||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||| |
|
|
| T |
9463956 |
tgtcaaaatggtaaagcaaatttgataatgacacaatatgaaagatcttttttactactctttctgtaaatgtaaaagatcttaatctctcacttcaatt |
9463857 |
T |
|
| Q |
220 |
tatcatcttctcaaaaccttaaattttttaatgtcttct |
258 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
9463856 |
tgtcctcttctcaaaaccttaaattttttaatgtcttct |
9463818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 6e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 10423835 - 10424070
Alignment:
| Q |
20 |
tctaaagagcttttttaatcaattacaaagattctattaaacacaattacaaattgtttataaaactaactcttcatggtttctacaattggaagttcca |
119 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
10423835 |
tctaaagagctattttaatcgattacaaagattctattaaacacaattacaaatagtttataaaattaactcttcatggtttctacaattggaagttcta |
10423934 |
T |
|
| Q |
120 |
tgtgaaagtggtaaaacaaatttgatagtgacactatataaaagatcttttttactactctttctctaaatgtaaaagatcttaatctcttactccaatt |
219 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| ||||||||||||| ||| ||||| |
|
|
| T |
10423935 |
tgggaaagtggtaaaggaaatttgatagtgacacaatataaaagatcttttttactgctctttctgtaaatgtaaaggatcttaatctctaacttcaatt |
10424034 |
T |
|
| Q |
220 |
tatcatcttctcaaaaccttaaattttttaatgtct |
255 |
Q |
| |
|
|||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
10424035 |
tatcctcttctcaaaaccttcaattttctaatgtct |
10424070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 11901246 - 11901067
Alignment:
| Q |
43 |
tacaaagattctattaaacacaattacaaattgtttataaaactaactcttcatggtttctacaattggaagttccatgtgaaagtggtaaaacaaattt |
142 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
11901246 |
tacatagattctattaagcacaattacaaatagtttataaaactaactcttcatggtttctacaattggaagttccatgtcaaattggtaaagcaaattt |
11901147 |
T |
|
| Q |
143 |
gatagtgacactatataaaagatcttttttactactctttctctaaatgtaaaagatcttaatctcttactccaatttat |
222 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| | |||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
11901146 |
gatagtgacacaatatcaaagatcttttttactactctttttataaatgtaaaagattttaatctctcacttcaatttat |
11901067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University