View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_high_23 (Length: 365)
Name: NF16006_high_23
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 1967828 - 1967492
Alignment:
| Q |
18 |
caagcaaaattgcagtgaatagtaataataataattaacatgtatgttttcttaaaatatgttaccggcaacgatatatctccttgagcattatactctg |
117 |
Q |
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| T |
1967828 |
caagcaaaattgcagtgaatagtaataataataattaacatgtatgttttcttaaattatgttaccggcaacgatatatctccttgagcattatactctg |
1967729 |
T |
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| Q |
118 |
gtgtttccaatgctttggtatttcttgctccccttgaagcagttactggcccatgtcctttaacagcttctgtattttttctgatcatatcaacaaataa |
217 |
Q |
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| T |
1967728 |
gtgtttccaatgctttggtatttcttgctccccttgaagcagttactggcccatgtcctttaacagcttctgtattttttctgatcatatcaacaaataa |
1967629 |
T |
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| Q |
218 |
ataaatatccatgaatttgcacgacacttttaataaagcatcaaactatacaagggaattattttggggaaggttagtaatatcaagaaaatttatattt |
317 |
Q |
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| T |
1967628 |
ataaatatccatgaatttgcacgacacttttaataaagcatcaaactatacaagggaattattttggggaaggttagtaatatcaagaaaatttatattt |
1967529 |
T |
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| Q |
318 |
aaaattctatgtatattgaaataccttgttgcttctt |
354 |
Q |
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| T |
1967528 |
aaaattctatgtatattgaaataccttgttgcttctt |
1967492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 40252718 - 40252662
Alignment:
| Q |
92 |
tatatctccttgagcattatactctggtgtttccaatgctttggtatttcttgctcc |
148 |
Q |
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| T |
40252718 |
tatatcacctcgagcattatactctggtgtttccaatgctttggtatttcttgctcc |
40252662 |
T |
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