View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_high_25 (Length: 347)
Name: NF16006_high_25
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 20 - 337
Target Start/End: Original strand, 5139606 - 5139922
Alignment:
| Q |
20 |
aacatgcaataatgttggcaaagacttggtttgtggaatgtcatgcattatgtgttgaacattaatgattcggtggctgagagcatattttctatccaga |
119 |
Q |
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| T |
5139606 |
aacatgcaataatgttggcaaagacttggtttgtggaatgtcatgcattatgtgttgaacattaatgattcggtggctgagagcatattttctatgcaga |
5139705 |
T |
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| Q |
120 |
ctttaagtgcagacgaaagaaaattattttgttgcactatatatgatctatatggaaataaaggagtactcatgttaggagaaatgaagcgggtatgatc |
219 |
Q |
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| T |
5139706 |
ctttaagtgcagaccaaaaagaattattttgttgcactatatatgatctatatggaaataaaggagtactcatgttaggagaaatgaagcgggtatgatc |
5139805 |
T |
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| Q |
220 |
aagcataatttgtgcttgctaaaactaaatggatcaaacctggggaggacataggtataggctaccaagatttgactgtaactcttctcaccatatgaag |
319 |
Q |
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| T |
5139806 |
aagcataatttgtgcttgctaaaactaaatggatcaaacctggggaggacataggtataggctaccaagatttgactgtaactcttctcaccatacg-ag |
5139904 |
T |
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| Q |
320 |
gttctcaaccaccctatg |
337 |
Q |
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| T |
5139905 |
gttctcaaccatcctatg |
5139922 |
T |
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