View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16006_high_3 (Length: 727)

Name: NF16006_high_3
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16006_high_3
NF16006_high_3
[»] chr4 (5 HSPs)
chr4 (225-711)||(35205511-35205993)
chr4 (18-176)||(35205989-35206147)
chr4 (166-298)||(20525960-20526092)
chr4 (26-65)||(38636114-38636153)
chr4 (246-310)||(25790865-25790930)
[»] chr1 (1 HSPs)
chr1 (173-301)||(4816727-4816855)
[»] chr3 (2 HSPs)
chr3 (225-308)||(25501022-25501105)
chr3 (246-308)||(50509470-50509532)
[»] chr8 (2 HSPs)
chr8 (236-307)||(3664977-3665048)
chr8 (165-295)||(15074320-15074450)
[»] chr7 (1 HSPs)
chr7 (246-308)||(3099998-3100060)
[»] chr2 (1 HSPs)
chr2 (244-310)||(7119839-7119905)


Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 225 - 711
Target Start/End: Complemental strand, 35205993 - 35205511
Alignment:
Q  225 ttgtatgttcatcaccaattttttgatttgattctattttgtattacaactattatgctgaatgaaataatataagttactttttggagaagataaataa 324  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35205993 ttgtatgttcatcaccaattctttgatttgattctattttgtattacaactattatgctgaatgaaataatataagttactttttggagaagataaataa 35205894  T
Q  325 acaactcacgtgacaaccaacaacgtatttccctgcgtatacatacgannnnnnnnnnnnnnnnnnnnnnngaccggccttgagttccatgcatataagt 424  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||                       |||||||||||||||||||||||||||||    
T  35205893 acaactcacgtaacaaccaacaacgtatttccctgtgtatacatacgattttccgttttttaatattttttgaccggccttgagttccatgcatataagt 35205794  T
Q  425 tacttgaagagagaatgatatatatattgtcgcaaaggttggtctgatttagtggtacgtacaagtaagcacaactcttgtaaaaatgtgcatggcatat 524  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |    ||||||||||||||||||||||||||||||||||||    
T  35205793 tacttgaagagagaatgatatatatgttgtcacaaaggttggtctgatttagtggtacat----gtaagcacaactcttgtaaaaatgtgcatggcatat 35205698  T
Q  525 ggtaccgacacaaattctagaaggaaaagcgttattattcaagcaggctaaatgcttgaagtgggtagggttgtgcatttgaagaaaggcaaagattcaa 624  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  35205697 ggtaccgacacaatttctagaaggaaaagcgttattattcaagcaggctaaatgcttgaagtgggtagggtggtgcacttgaagaaaggcaaagattcaa 35205598  T
Q  625 gatgaattggcgattactcagctggtacactaaaaatcagtaagtagaagaatgcttggatcacgttagcattagcaattcatattc 711  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35205597 gatgaattggcgattactcagctggtacactaaaaatcagtaagtagaagaatgcttggatcacgttagcattagcaattcatattc 35205511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 35206147 - 35205989
Alignment:
Q  18 tattcctccaaacacataagcttcgtgatttgttcgcggtcaatttgtaagctagtggtagtcaacactattgatagatcaaataaccattatgtatttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35206147 tattcctccaaacacataagcttcgtgatttgttcgcggtcaatttgtaagctagtggtagtcaacactattgatagattaaataaccattatgtatttg 35206048  T
Q  118 gcaatatcatggctacatgtagagctatgttacaataaaatacaaatataagttttgta 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35206047 gcaatatcatggctacatgtagagctatgttacaataaaatacaaatataagttttgta 35205989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 298
Target Start/End: Complemental strand, 20526092 - 20525960
Alignment:
Q  166 taagttttgtaaagagacaaacaaattatgtcgttcataacttaacaaagacgtcagagttgtatgttcatcaccaattttttgatttgattctattttg 265  Q
    |||||||||||||||||||| ||||||||||||||||||  |||  |||||  ||| ||||||||| || ||| ||  | || ||||||||   || ||     
T  20526092 taagttttgtaaagagacaagcaaattatgtcgttcatagtttagtaaagatttcaaagttgtatgctcgtcatcatatcttcgatttgatctaatcttt 20525993  T
Q  266 tattacaactattatgctgaatgaaataatata 298  Q
    |||||| |||| | || ||||||||||||||||    
T  20525992 tattactactactttgatgaatgaaataatata 20525960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 38636114 - 38636153
Alignment:
Q  26 caaacacataagcttcgtgatttgttcgcggtcaatttgt 65  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  38636114 caaacacataagcttcgtgatttgttcgctgtcattttgt 38636153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 25790865 - 25790930
Alignment:
Q  246 tttgatttgattctattttgtattacaactattat-gctgaatgaaataatataagttactttttg 310  Q
    |||||||| ||| ||| ||||||||| |||||| | | ||||||||||| ||||||||||||||||    
T  25790865 tttgatttaattttatcttgtattactactatttttgatgaatgaaatagtataagttactttttg 25790930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 301
Target Start/End: Original strand, 4816727 - 4816855
Alignment:
Q  173 tgtaaagagacaaacaaattatgtcgttcataacttaacaaagacgtcagagttgtatgttcatcaccaattttttgatttgattctattttgtattaca 272  Q
    ||||| ||||||| ||||||||||||  |||| |||| ||| |  |||| | ||||||| || ||||||| | ||||||||||||  || || ||||||     
T  4816727 tgtaaggagacaagcaaattatgtcgcccatagcttagcaagggagtcaaaattgtatgctcgtcaccaagtctttgatttgatttcatcttatattact 4816826  T
Q  273 actattatgctgaatgaaataatataagt 301  Q
    |||||| || |||||||||||| ||||||    
T  4816827 actattttgatgaatgaaataagataagt 4816855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 225 - 308
Target Start/End: Original strand, 25501022 - 25501105
Alignment:
Q  225 ttgtatgttcatcaccaattttttgatttgattctattttgtattacaactattatgctgaatgaaataatataagttactttt 308  Q
    ||||||| || ||||| | | ||| ||||||||| || |||||||  ||||||| || ||||||||||||||||||||||||||    
T  25501022 ttgtatgctcgtcaccgagtctttcatttgattccatcttgtattgaaactattgtgatgaatgaaataatataagttactttt 25501105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 50509532 - 50509470
Alignment:
Q  246 tttgatttgattctattttgtattacaactattatgctgaatgaaataatataagttactttt 308  Q
    ||||||||||||| || |||||||||  ||||| || ||||||||||||||||||||| ||||    
T  50509532 tttgatttgattccatcttgtattacctctattgtgatgaatgaaataatataagttattttt 50509470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 3664977 - 3665048
Alignment:
Q  236 tcaccaattttttgatttgattctattttgtattacaactattatgctgaatgaaataatataagttacttt 307  Q
    ||||||| | ||||||||| ||| |||||||||||| ||||| ||| | |||||||||| ||||||| ||||    
T  3664977 tcaccaagtctttgatttgtttccattttgtattactactatgatgattaatgaaataaaataagtttcttt 3665048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 295
Target Start/End: Complemental strand, 15074450 - 15074320
Alignment:
Q  165 ataagttttgtaaagagacaaacaaattatgtcgttcataacttaacaaagacgtcagagttgtatgttcatcaccaattttttgatttgattctatttt 264  Q
    ||||||||||| |  |||||| |||||| ||||| |||||   || ||| ||| ||| | ||||||| || ||| ||  | |||||||||||||||||||    
T  15074450 ataagttttgttagaagacaagcaaattgtgtcgctcatagtatagcaaggacatcaaaattgtatgctcgtcaacatatctttgatttgattctatttt 15074351  T
Q  265 gtattacaactattatgctgaatgaaataat 295  Q
     |||| | |||||| || |||||||||||||    
T  15074350 atatttctactattgtgatgaatgaaataat 15074320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 3100060 - 3099998
Alignment:
Q  246 tttgatttgattctattttgtattacaactattatgctgaatgaaataatataagttactttt 308  Q
    ||||||||||||| || ||||||||| || ||  || ||||||||||||||||||||| ||||    
T  3100060 tttgatttgattccatcttgtattactacgatagtgatgaatgaaataatataagttattttt 3099998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 7119905 - 7119839
Alignment:
Q  244 tttttgatttgattctattttgtattacaactattatgctgaatgaaataatataagttactttttg 310  Q
    ||||||||||||||| || ||||||||   |||| ||| ||||||||| |||||||||||| |||||    
T  7119905 tttttgatttgattccatcttgtattagttctatcatgttgaatgaaagaatataagttaccttttg 7119839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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