View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_high_31 (Length: 321)
Name: NF16006_high_31
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 21016451 - 21016157
Alignment:
| Q |
12 |
atgaaaaacagcacctataagatattcaggattttttaaaactatatcttttgcctcattccctttgcatcaaatgtccatgcctctgcatcatttatag |
111 |
Q |
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| T |
21016451 |
atgaaaaacagcacctataagatattcaggattttttaaaactatatcttttgcctcattccctctgcatcaaatgtccatgcctctgcatcatttatag |
21016352 |
T |
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| Q |
112 |
ggttttgcaggcagggtacatatttaaattacttgctcctttaatttttcagtcttgtcaaatcaatatctttgcatttaacctattaaagtaccaaaat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21016351 |
ggttttgcaggcagggtacatatttaaattacttgctcctttaatttttcactcttgtctaatcaatatctttgcatttaacctattaaagtaccaaaat |
21016252 |
T |
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| Q |
212 |
ggcatgacacaaaggttgcagtgaagccacctcaactaccaagtaccaacatttaagtgtgtacaatttgtttcttactgctcaaccagattgtt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21016251 |
ggcatgacacaaaggttgcagtgaagccacctcaactaccaagtaccaacatttaagtgtgtacaatttgtttcttactgctcaaccagattgtt |
21016157 |
T |
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