View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_high_34 (Length: 317)
Name: NF16006_high_34
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 118 - 302
Target Start/End: Complemental strand, 24076398 - 24076216
Alignment:
| Q |
118 |
agctagtaaaagttcacgactcatcatacatacgatgaaagtcaagagaaagctagttggaatggaaaatttgaagcataaagaagacccttaatgtgca |
217 |
Q |
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| T |
24076398 |
agctagtaaaagttcacgactcatcatacaaatgatgaaagtt--gagaaagctagttggaatggaaaatttgaagcataaagaagacccttaatgtgca |
24076301 |
T |
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| Q |
218 |
gacaaatagttaattaacggtgaccaccttagacaaagtatttatatcctctgcacaatgcatcaactgcaaccagcaaaatagt |
302 |
Q |
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| T |
24076300 |
gacaaatagttaattaatggtgaccaccttagacaaagtatttatatcctctgcacaatgcatcaactgcaaccagcaaaatagt |
24076216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 24076607 - 24076494
Alignment:
| Q |
1 |
aagatatacattgtcggagtatcaaatcatttgcaaaatatatggctaagcttatgtctttgaatcaacgatagaaaacaaatcagcatttgatttcatc |
100 |
Q |
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|||||||||||||| |||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24076607 |
aagatatacattgttggagtatcaaataatttgtgaaatatatgtctaagcttatgtctttgaatcaacgatagaaaacaaatcagcatttgatttcatc |
24076508 |
T |
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| Q |
101 |
tatgttatgatagg |
114 |
Q |
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| T |
24076507 |
tatgttatgatagg |
24076494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 16441160 - 16441254
Alignment:
| Q |
1 |
aagatatacattgtcggagtatcaaatcatttgcaaaatatatggctaagcttatgtctttgaatcaacgatagaaaacaaatcagcatttgatt |
95 |
Q |
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||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16441160 |
aagatatacattgtcggagtatcaaataatatgtgaaatatatggctaagcttatgtctttgaatcaacgatagaaaacaaatcagcatttgatt |
16441254 |
T |
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