View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_high_37 (Length: 310)
Name: NF16006_high_37
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 7446059 - 7446342
Alignment:
| Q |
11 |
caaaggtggagaaaacagtgccaacgacatgaacaaaaagaggaaattgagtgatgaacaagtgaatattttggaagaaaactttggaaatgaacataaa |
110 |
Q |
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| T |
7446059 |
caaaggtggagaaaacagtgctaacgacatgaacaaaaagaggaaattgagtgatgaacaagtgaatattttggaagaaaactttggaaatgaacataaa |
7446158 |
T |
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| Q |
111 |
cttgagtcagagaagaaggataggcttgcaatggagcttggtttagatccaagacaagttgcagtatggttccagaatcgaagggctaggtggaagaaca |
210 |
Q |
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| T |
7446159 |
cttgagtcagagaagaaggataggcttgcaatggagcttggtttagatccaagacaagttgcagtatggttccagaatcgaagggctaggtggaagaaca |
7446258 |
T |
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| Q |
211 |
agaaacttgaagaagagtacttcagtcttnnnnnnnttcatgaatccaccattcttgagaagtgtcttcttgaaaccaaggtat |
294 |
Q |
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| T |
7446259 |
agaaacttgaagaagagtacttcagtcttaaaaaaattcatgaatccaccattcttgagaagtgtcttcttgaaaccaaggtat |
7446342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 7461003 - 7461286
Alignment:
| Q |
11 |
caaaggtggagaaaacagtgccaacgacatgaacaaaaagaggaaattgagtgatgaacaagtgaatattttggaagaaaactttggaaatgaacataaa |
110 |
Q |
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| T |
7461003 |
caaaggtggagaaaacagtgctaacgacatgaacaaaaagaggaaattgagtgatgaacaagtgaatattttggaagaaaactttggaaatgaacataaa |
7461102 |
T |
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| Q |
111 |
cttgagtcagagaagaaggataggcttgcaatggagcttggtttagatccaagacaagttgcagtatggttccagaatcgaagggctaggtggaagaaca |
210 |
Q |
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| T |
7461103 |
cttgagtcagagaagaaggataggcttgcaatggagcttggtttagatccaagacaagttgcagtatggttccagaatcgaagggctaggtggaagaaca |
7461202 |
T |
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| Q |
211 |
agaaacttgaagaagagtacttcagtcttnnnnnnnttcatgaatccaccattcttgagaagtgtcttcttgaaaccaaggtat |
294 |
Q |
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| T |
7461203 |
agaaacttgaagaagagtacttcagtcttaaaaaaaatcatgaatccaccattcttgagaagtgtctccttgaaaccaaggtat |
7461286 |
T |
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