View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_high_40 (Length: 304)
Name: NF16006_high_40
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_high_40 |
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| [»] scaffold1880 (1 HSPs) |
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| [»] scaffold1462 (1 HSPs) |
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Alignment Details
Target: scaffold1880 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold1880
Description:
Target: scaffold1880; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 530 - 251
Alignment:
| Q |
25 |
ccagtcaatcctgtcttctatatctacgtttcagacactaacaacacttaagcttgccgcttatacaaacccttgggtttatcaaaaaccattctttcca |
124 |
Q |
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| T |
530 |
ccagtcaatcctgtcttctatatctacgtttcagacactaacaacacttaagcttgccgtttatacaaacccttggatttatcacaaagcattctttcca |
431 |
T |
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| Q |
125 |
gactctctgaaacttccgacattggttaatttggaactaacagatttcatctttagagatagtgaaaatgtcggttatcttgagcctttttcgttcttta |
224 |
Q |
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| T |
430 |
gactatctgaaatttccgacattggttaatttggaactaactaatttcatctttagagatagtgaaaatgtcggttatgttgagcctttttcgttcttta |
331 |
T |
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| Q |
225 |
ataagttgaatagtttgatcctccttggttgtattgcaatgaatgcaaagccccttgctgtatcaagtttgtcacttatc |
304 |
Q |
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| T |
330 |
ataagttgaatagtttgatcctccgtggttgtagtgcaatgaaagcaaagccccttgcattatcaagtttgtcacttatc |
251 |
T |
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Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 25 - 256
Target Start/End: Original strand, 18316119 - 18316350
Alignment:
| Q |
25 |
ccagtcaatcctgtcttctatatctacgtttcagacactaacaacacttaagcttgccgcttatacaaacccttgggtttatcaaaaaccattctttcca |
124 |
Q |
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| T |
18316119 |
ccagtcaatcctgtcttcaatgccttcgtttcaaacactaacgtcacttaagcttgctgttaatatacgcccttgggattctctcaaagcattttttcct |
18316218 |
T |
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| Q |
125 |
gactctctgaaacttccgacattggttaatttggaactaacagatttcatctttagagatagtgaaaatgtcggttatcttgagcctttttcgttcttta |
224 |
Q |
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| T |
18316219 |
gactatctgaaatttccttcattggttaatttggaactaactaatttgatgtttagagatagggaaaatgtcggttatgttgagcctttttcggtcttca |
18316318 |
T |
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| Q |
225 |
ataagttgaatagtttgatcctccttggttgt |
256 |
Q |
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| T |
18316319 |
aaaagttgaatagtttgatcctccgtggttgt |
18316350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1462 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold1462
Description:
Target: scaffold1462; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 256
Target Start/End: Original strand, 1230 - 1461
Alignment:
| Q |
25 |
ccagtcaatcctgtcttctatatctacgtttcagacactaacaacacttaagcttgccgcttatacaaacccttgggtttatcaaaaaccattctttcca |
124 |
Q |
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||||||||||||||| ||||| ||| |||||||||||||||| ||||||||||| | | | | | ||||| |||||||||||||| |||| ||||| |
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| T |
1230 |
ccagtcaatcctgtcatctatgtcttcgtttcagacactaacgtcacttaagcttcatgttaaaatacaccctagggtttatcaaaaagcattttttcct |
1329 |
T |
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| Q |
125 |
gactctctgaaacttccgacattggttaatttggaactaacagatttcatctttagagatagtgaaaatgtcggttatcttgagcctttttcgttcttta |
224 |
Q |
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|||| ||||||| |||| |||||||||||||||||||||| |||| || |||||||||||||||||||||||| || |||||||||||||| |||| |
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| T |
1330 |
gactatctgaaatttccagcattggttaatttggaactaactaatttgatgtttagagatagtgaaaatgtcggtgatgttgagcctttttcggtcttcc |
1429 |
T |
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| Q |
225 |
ataagttgaatagtttgatcctccttggttgt |
256 |
Q |
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| T |
1430 |
aaaatttgaagaatttgatcctcagtggttgt |
1461 |
T |
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