View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_high_53 (Length: 262)
Name: NF16006_high_53
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 34547811 - 34548030
Alignment:
| Q |
20 |
tattctccactaaactccaattctcaggaatgtgatattcatcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctctaaatt |
119 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34547811 |
tattctcaactaccctccaattctcaggaatgtgatattcatcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctctaaatt |
34547910 |
T |
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| Q |
120 |
gaaccctcctttccttccttgtgttcctgcaattccatgcaagtaaacctccatgttatgtgcactaaccccactcttcaagtacttagattcttcagtg |
219 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34547911 |
gaaccctcctttacttccttgtgttcctgcaattccatgcaagtaaacctccatgttatgtgcactaaccccactcttcaagtacttagattcttcggtg |
34548010 |
T |
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| Q |
220 |
tcgatttctaattcctctcc |
239 |
Q |
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|||||||||||||||||||| |
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| T |
34548011 |
tcgatttctaattcctctcc |
34548030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 34556304 - 34556531
Alignment:
| Q |
20 |
tattctccactaaactccaattctcaggaatgtgatattcatcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctctaaatt |
119 |
Q |
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|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34556304 |
tattctccactaccctccaattctcaggaatatgatactcatcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctccaaatt |
34556403 |
T |
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| Q |
120 |
gaaccctcctttccttccttgtgttcctgcaattccatgcaagtaaacctccatgttatgtgcactaaccccactcttcaagtacttagattcttcagtg |
219 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||| ||||||| |
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| T |
34556404 |
gaaccctcctttgcttccttgtgttcctgcaattccatgcaagtaaacctccatgttatgttcactaacaccactcttcaagtactttgatttttcagtg |
34556503 |
T |
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| Q |
220 |
tcgatttctaattcctctcccacctttg |
247 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
34556504 |
tcgatttctaattcctctcccacctttg |
34556531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 4674487 - 4674568
Alignment:
| Q |
91 |
agtgcaatgtcacgattcacctctaaattgaaccctcctttccttccttgtgttcctgcaattccatgcaagtaaacctcca |
172 |
Q |
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|||||||| |||||||| ||||| | |||||| ||| ||| || |||||||||||||| | ||||||||| ||| |||||| |
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| T |
4674487 |
agtgcaatatcacgattaacctcaagtttgaacactcttttactcccttgtgttcctgccactccatgcaaataagcctcca |
4674568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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