View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_high_56 (Length: 257)
Name: NF16006_high_56
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_high_56 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 30305360 - 30305115
Alignment:
| Q |
12 |
atgaaccaaaaccaaataacacatgtactatattgagagaagttacaagctctcataatattaatgaacaattatcgaagcatccaaacataaagaaaaa |
111 |
Q |
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| T |
30305360 |
atgaaccaaaaccaaataacacatgtactatattaagagaagttacaagctctcataatattaatgaacaattatcgaagcatccaaacataaagaaaaa |
30305261 |
T |
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| Q |
112 |
atattggatgagaccatacttctatgattaaggagagacattgtaggagaataattacggcaatctacccaacttaagaattccttccaaattcaagacc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30305260 |
atattggatgagaccatacttctatgattaaggagagacattgtaggagaataattacggcaatctacccaacttaagaattccttccaaattcaagacc |
30305161 |
T |
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| Q |
212 |
aaaaagtggtaacatcaaagtccattatactcaaatctatgaatcc |
257 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30305160 |
aaaaagtggtaacatcaaagtccattctactcaaatctatgaatcc |
30305115 |
T |
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