View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_high_68 (Length: 248)
Name: NF16006_high_68
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_high_68 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 52085038 - 52084904
Alignment:
| Q |
19 |
ttgttaatgtatgtttttgttaattacattgactaatgatttttaccttctaatttattgttcaacataattttttatttgaatggattcaaacatatat |
118 |
Q |
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| T |
52085038 |
ttgttaatgtatgtttttgtcaattacattgactaatgatttttaccttctaatttattgttcaacataattttttatttcaatggattcaaacatatat |
52084939 |
T |
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| Q |
119 |
tactttacatacaactcatatttggctggaatcaa |
153 |
Q |
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| T |
52084938 |
tactttacatacaactcatatttggctggaatcaa |
52084904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 52093894 - 52093824
Alignment:
| Q |
18 |
attgttaatgtatgtttttgttaattacattgactaatgat-ttttaccttctaatttattgttcaacata |
87 |
Q |
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| T |
52093894 |
attgttaatgtatgttttgtttaattacatttactaatgattttttaccttctaattttttgttgaacata |
52093824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 52083579 - 52083533
Alignment:
| Q |
184 |
aaaattcattttccagcatgaagttgaacatgtgacttccttgtaactc |
232 |
Q |
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| T |
52083579 |
aaaattcattttccagcaggaagttgaacat-tgactt-cttgtaactc |
52083533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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