View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16006_high_70 (Length: 245)
Name: NF16006_high_70
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_high_70 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 36580514 - 36580324
Alignment:
| Q |
16 |
agtttgtagggctttatatattaaaccagttcaattgtgttgccaagggtttattaccaaggggaattataaaaatgtgatgataagtgccaaaacatag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36580514 |
agtttgtagggctttatatattaaaccagttcaattgtgttgccaagggtttattaccaaggggaattataaaaatgtgatgataagtgccaaaacatag |
36580415 |
T |
|
| Q |
116 |
caattgttttctgacaaaaattaaagtgccacaacttttgtataatattgaaacaacatgaaaaaatgcaagctaaaaccaacgtgagtta |
206 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
36580414 |
caattgttttctgacaaaaattaaaatgccacaacttttgtatgatattgaaacaacatgacaaaatgcaagctaaaactaacgtgagtta |
36580324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 2831181 - 2831007
Alignment:
| Q |
28 |
tttatatattaaaccagttcaattgtgttgccaagggtttattaccaaggggaattataaaaatgtgatgataagtgccaaaacatagcaattgttttct |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2831181 |
tttatatattaaaccagttcaattgtgttgccaagggtttattaccaaggggaattataaaaatgtgatgataagtgccaaagcatagcaattgttttct |
2831082 |
T |
|
| Q |
128 |
gacaaaaattaaagtgccacaacttttgtataatattgaaacaacatgaaaaaatgcaagctaaaaccaacgtga |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2831081 |
gacaaaaattaaagtgccacaacttttgtatgatattaaaacaacatgacaaaatgcaagctaaaaccaacgtga |
2831007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 66 - 226
Target Start/End: Original strand, 42883554 - 42883715
Alignment:
| Q |
66 |
ttattaccaaggggaattataaaaatgtgatgataagtgccaaaacatagcaattgttttctgacaaaaattaaagtgccacaacttttgtataatattg |
165 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||| | |||||||||||||||||||||||||||| |||||| |
|
|
| T |
42883554 |
ttattaccaaagggaattataaaaatgtgatgataagtgccaaagcatatcaattgttttctcataaaaattaaagtgccacaacttttgtatgatattg |
42883653 |
T |
|
| Q |
166 |
aaacaacatgaaaaaatgcaagctaaaaccaacgtgagtt-actcacgtagggatttaatgt |
226 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||| |||| ||| |||||| ||||| |
|
|
| T |
42883654 |
aaacaacatgacaaaatgcaagctaaaaccaacgcgagttaactcgcgttgggattcaatgt |
42883715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University