View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_high_79 (Length: 231)
Name: NF16006_high_79
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_high_79 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 43338247 - 43338053
Alignment:
| Q |
19 |
gaatctcagactcaacagcacatgcacaacaatgtttctgctggtaaaaaacctattgacaacaactatggtaaaggtttgtttgttaagatcaacatgg |
118 |
Q |
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| T |
43338247 |
gaatctcagactcaacaggacatgcacaacaatgtttctgctggtaaaaaacctattgacaacaactatggtaaaggtttgtttgttaagatcaacatgg |
43338148 |
T |
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| Q |
119 |
atggtgttccaattggtagaaaagttgatctcaatgcttatcatagctatgataatctttcttcagctgtggatgagctctttagaggactcctt |
213 |
Q |
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| T |
43338147 |
atggtgttccaattggtagaaaagttgatctcaatgcttatcatagctatgataatctttcttcagctgtggatgacctctttagaggactcctt |
43338053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 81 - 215
Target Start/End: Complemental strand, 4571373 - 4571239
Alignment:
| Q |
81 |
caactatggtaaaggtttgtttgttaagatcaacatggatggtgttccaattggtagaaaagttgatctcaatgcttatcatagctatgataatctttct |
180 |
Q |
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| T |
4571373 |
caactctggtaaaggcttgtttgtgaagatcaatatggatggagttcctattgggagaaaaatagacatcaatgcttatgatagctatgaaaaactttca |
4571274 |
T |
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| Q |
181 |
tcagctgtggatgagctctttagaggactccttga |
215 |
Q |
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| T |
4571273 |
tctgctgttgatgacctatttagaggtctccttga |
4571239 |
T |
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