View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16006_high_81 (Length: 227)

Name: NF16006_high_81
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16006_high_81
NF16006_high_81
[»] chr3 (7 HSPs)
chr3 (16-213)||(48838681-48838878)
chr3 (60-173)||(38043861-38043975)
chr3 (113-173)||(50904860-50904920)
chr3 (78-171)||(38033849-38033943)
chr3 (113-173)||(55084798-55084858)
chr3 (113-171)||(38024945-38025003)
chr3 (113-171)||(38031397-38031455)
[»] chr4 (11 HSPs)
chr4 (16-171)||(17970213-17970369)
chr4 (119-175)||(27424580-27424636)
chr4 (113-175)||(27505768-27505830)
chr4 (113-175)||(27523469-27523531)
chr4 (113-175)||(27526178-27526240)
chr4 (119-174)||(27476705-27476760)
chr4 (113-175)||(27444860-27444922)
chr4 (113-175)||(27557501-27557563)
chr4 (127-175)||(27414370-27414418)
chr4 (121-173)||(27502875-27502927)
chr4 (119-175)||(27556445-27556501)
[»] chr2 (1 HSPs)
chr2 (16-171)||(3073483-3073639)
[»] chr5 (1 HSPs)
chr5 (113-171)||(1754311-1754369)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 48838878 - 48838681
Alignment:
Q  16 ccgtttacctgcagcaataagaatggcacctttagcagtagccaaaacatcattgaaagtcatgaatgtgccaacggtctatcttgtggcgtacatcgag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  48838878 ccgtttacctgcagcaataagaatggcacctttagcagtagccaaaacatcattgaaagtcatgaatgtgccaacgggctatcttgtggcatacatcgag 48838779  T
Q  116 aggaaatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaatgggtggcctcacaattccttgcacataaaatcgttttt 213  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48838778 aggaaatgaagcggtttgtgattcccgtgtcctacctgaaccaatcttcatttcaagaatgggtggcctcacaattccttgcacataaaattgttttt 48838681  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 173
Target Start/End: Original strand, 38043861 - 38043975
Alignment:
Q  60 aaacatcattgaaagtcatgaatgtgccaacggtctatcttgtggcgtac-atcgagaggaaatgaagcggtttgtgattcccgtgtcctacttgaacca 158  Q
    ||||||||||||||||||  |||||||||| |  ||||||||  | ||||  | ||||||||||||||||||||||||| ||  |||| |||||||| ||    
T  38043861 aaacatcattgaaagtcacaaatgtgccaaagagctatcttgcagtgtactttggagaggaaatgaagcggtttgtgatccctatgtcatacttgaatca 38043960  T
Q  159 atcttcatttcaaga 173  Q
    | |||| ||||||||    
T  38043961 aacttcgtttcaaga 38043975  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 50904920 - 50904860
Alignment:
Q  113 gagaggaaatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaaga 173  Q
    |||| |||||||||||||||||||| |   ||||||||||||||||| |||||||||||||    
T  50904920 gagaagaaatgaagcggtttgtgatccatatgtcctacttgaaccaaacttcatttcaaga 50904860  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 38033943 - 38033849
Alignment:
Q  78 tgaatgtgccaacggtctatcttgtggcgtacatcg-agaggaaatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaa 171  Q
    |||||||||||| || ||||||||  | |||||| | |||| |||||||||||||||| || |||  ||| |||||||||||| |||||||||||    
T  38033943 tgaatgtgccaaagggctatcttgcagtgtacattggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaa 38033849  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 55084798 - 55084858
Alignment:
Q  113 gagaggaaatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaaga 173  Q
    ||||| ||||||||||||||||||| ||  |||| |||||||||||| | |||||||||||    
T  55084798 gagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaaga 55084858  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 38025003 - 38024945
Alignment:
Q  113 gagaggaaatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaa 171  Q
    ||||| |||||||||||||||| || ||| |||| |||||||||||| |||| ||||||    
T  38025003 gagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaa 38024945  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 38031455 - 38031397
Alignment:
Q  113 gagaggaaatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaa 171  Q
    ||||| |||||||||||||||| || ||| |||| |||||||||||| |||| ||||||    
T  38031455 gagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaa 38031397  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 17970213 - 17970369
Alignment:
Q  16 ccgtttacctgcagcaataagaatggc-acctttagcagtagccaaaacatcattgaaagtcatgaatgtgccaacggtctatcttgtggcgtacatcg- 113  Q
    ||||||||||||||| ||||||| ||  || |||||||| ||||||| | |||||||||||    |||||||||| ||  ||||||| || |||| | |     
T  17970213 ccgtttacctgcagctataagaagggtgacatttagcagcagccaaa-cgtcattgaaagtagcaaatgtgccaaagggatatcttgcggtgtacgttgg 17970311  T
Q  114 agaggaaatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaa 171  Q
    |||||||||||||||||||||||| ||   ||| |||||||||||| |||||||||||    
T  17970312 agaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaa 17970369  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 27424636 - 27424580
Alignment:
Q  119 aaatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaat 175  Q
    |||||| ||||||||||||||| || || |||||||||||| |||||||||||||||    
T  27424636 aaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaat 27424580  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 27505830 - 27505768
Alignment:
Q  113 gagaggaaatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaat 175  Q
    ||||| |||||||||||||||||||||| || || |||||||||||| | ||||| |||||||    
T  27505830 gagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaat 27505768  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 27523531 - 27523469
Alignment:
Q  113 gagaggaaatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaat 175  Q
    ||||| |||||||||||||||||||||| || || || ||||||||| ||||||| |||||||    
T  27523531 gagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacttcattccaagaat 27523469  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 27526240 - 27526178
Alignment:
Q  113 gagaggaaatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaat 175  Q
    ||||| |||||||||||||||||||||| || || |||||||||||| | ||||| |||||||    
T  27526240 gagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaat 27526178  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 27476705 - 27476760
Alignment:
Q  119 aaatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaa 174  Q
    |||||||||||||||||||||| || || |||||||||||| | ||||| ||||||    
T  27476705 aaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaa 27476760  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 27444922 - 27444860
Alignment:
Q  113 gagaggaaatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaat 175  Q
    |||||||||||||| |||||||||| ||  | || ||||||| |||||| |||||||||||||    
T  27444922 gagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaat 27444860  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 27557501 - 27557563
Alignment:
Q  113 gagaggaaatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaat 175  Q
    |||||||||||||| |||||||||| ||  |||| ||||| |||||| | |||||||||||||    
T  27557501 gagaggaaatgaagaggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaat 27557563  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 27414418 - 27414370
Alignment:
Q  127 cggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaat 175  Q
    |||||||||||||| || || |||||||||||| | |||||||||||||    
T  27414418 cggtttgtgattcctgtatcatacttgaaccaaccctcatttcaagaat 27414370  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 27502927 - 27502875
Alignment:
Q  121 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaaga 173  Q
    ||||||||||||||||||||  |||| || ||||| ||| |||||||||||||    
T  27502927 atgaagcggtttgtgattccaatgtcatatttgaatcaaacttcatttcaaga 27502875  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 27556501 - 27556445
Alignment:
Q  119 aaatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaat 175  Q
    |||||||||| |||||||||||| | || |  ||||||||| |||||||||||||||    
T  27556501 aaatgaagcgatttgtgattcccatttcattattgaaccaaccttcatttcaagaat 27556445  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 3073483 - 3073639
Alignment:
Q  16 ccgtttacctgcagcaataagaatggc-acctttagcagtagccaaaacatcattgaaagtcatgaatgtgccaacggtctatcttgtggcgtacatcg- 113  Q
    ||||||||||||||| ||||||| ||  || |||||||| ||||||| | |||||||||||    |||||||||| ||  ||||||| || |||| | |     
T  3073483 ccgtttacctgcagctataagaagggtgacatttagcagcagccaaa-cgtcattgaaagtagcaaatgtgccaaagggatatcttgcggtgtacgttgg 3073581  T
Q  114 agaggaaatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaa 171  Q
    |||||||||||||||||||||||| ||   ||| |||||||||||| |||||||||||    
T  3073582 agaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaa 3073639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 1754369 - 1754311
Alignment:
Q  113 gagaggaaatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaa 171  Q
    |||| |||||||||||||||||||| ||||| || |||||||||||||| |||||||||    
T  1754369 gagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaa 1754311  T

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