View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16006_low_1 (Length: 824)

Name: NF16006_low_1
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16006_low_1
NF16006_low_1
[»] chr1 (15 HSPs)
chr1 (14-810)||(1793218-1794016)
chr1 (393-677)||(2012606-2012889)
chr1 (394-644)||(2007155-2007408)
chr1 (397-650)||(2011135-2011388)
chr1 (387-626)||(2020414-2020651)
chr1 (393-578)||(4334120-4334305)
chr1 (393-578)||(3379479-3379664)
chr1 (386-578)||(3362468-3362660)
chr1 (410-502)||(3373532-3373624)
chr1 (473-576)||(3342004-3342107)
chr1 (252-328)||(2007511-2007587)
chr1 (158-226)||(2007641-2007708)
chr1 (252-328)||(2020712-2020788)
chr1 (250-331)||(2012992-2013074)
chr1 (526-663)||(4322365-4322503)
[»] chr2 (5 HSPs)
chr2 (393-634)||(20935126-20935367)
chr2 (435-626)||(20924133-20924324)
chr2 (393-609)||(20953689-20953905)
chr2 (21-65)||(20954211-20954255)
chr2 (21-65)||(20935971-20936014)
[»] chr4 (1 HSPs)
chr4 (436-593)||(21238216-21238373)


Alignment Details
Target: chr1 (Bit Score: 717; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 14 - 810
Target Start/End: Complemental strand, 1794016 - 1793218
Alignment:
Q  14 caaaggcggaaagatagtatgcataagagagacatagagcatattaaaactcgacagactactcca--tgtcctgcctacacacaattgttacaaatcca 111  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||||||||||||||||||||||||    
T  1794016 caaaggaggaaagatagtatgcataagagagacatagagcatattaaaactcgacagactacttcacatgtcgtgcctacacacaattgttacaaatcca 1793917  T
Q  112 aaaatcaaaggggggaggttcgtacaaaaagggcagataaaaagtatattgattgataaaagatgaaaaagaaggtacatgagtctctcatttaaaggac 211  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1793916 aaaatcaaaggggggaggttcgtacaaaaaggacagataaaaagtatattgattgataaaagatgaaaaagaaggtacatgagtctctcatt-aaaggac 1793818  T
Q  212 tctactacactaaattgagcctgactcataagttctatttgtaactcaagtgtacaagttttagaatcaaacttccaatactagattgacaacttgaaag 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1793817 tctactacactaaattgagcctgactcataagttctatttgtaactcaagtgtacaagttttagaatcaaacttccaatactagattgacaacttgaaag 1793718  T
Q  312 gcactagacaaatactttaaggcagacaaagtttgcaaattctagaactgaaaaacatgacacaaatgcataaacaaagttaagccaaactaaatgatta 411  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||  |    
T  1793717 gcactagacaaatactttaagccagacaaagtttgcaaattctagaactgaaaaacatgacacaaaagcataaacaaagtcaagccaaactaaatgagca 1793618  T
Q  412 ctcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagtttatgcttaaccaaa 511  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1793617 ctcactaatatatgtagttctttaagattaggcgagcttctaaacacgcatagagcagctgaaatttccttcaagtcattgaagtttatgcttaaccaaa 1793518  T
Q  512 gatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaaattgctataaatcagaatatg 611  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1793517 gatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaaattgctataaatcagaatata 1793418  T
Q  612 atgtttataatacttgcagatcaagagttgcatactcattattgtagttcatttcaaattggtagggaattagaggtgtgggaaactaaacaatattagg 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1793417 atgtttataatacttgcagatcaagagttgcatactcattattgtagttcatttcaaattggtagggaattggaggtgtgggaaactaaacaatattagg 1793318  T
Q  712 gttgtcaattcaagcattatacctttagaaaatagtcgtcaatatccaagtattttacttgatgtagatgagcaa-aaaattaagcaagttgttggagct 810  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1793317 gttgtcaattcaagcattatacctttagaaaatagtcgtcaatatccaagtattttacttgatgtagatgagcaaaaaaattaagcaagttgttggagct 1793218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 393 - 677
Target Start/End: Complemental strand, 2012889 - 2012606
Alignment:
Q  393 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 492  Q
    |||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| | |    
T  2012889 aagccaaactaaatgagtactcacaaatatatttaattctttaagattaggcgagcttctgaacacacatagagcagttgaaatttctttcaagtcgtag 2012790  T
Q  493 aagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactga---agtagaaaagaaa 589  Q
    |||||||| |||||||||||||| |||| ||| |||||||||||||||||| ||  ||||||||||||||||| ||||||||||    ||| ||||||||    
T  2012789 aagtttatacttaaccaaagatacgttagattaatacaaggtgtaggaagctttactggcacaacacctgcagctaaatactgatattgtacaaaagaaa 2012690  T
Q  590 aattgctataaatcagaatatgatgtttataatacttgcagatcaagagttgcatactcattattgtagttcatttcaaattggtagg 677  Q
    |||||||  |||||||||||  ||||||  |||||||    ||||||||||||||| |||| |  || |||||||| ||||| |||||    
T  2012689 aattgctccaaatcagaatacaatgtttcaaatactt----atcaagagttgcatattcatgaaagtggttcattttaaatttgtagg 2012606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 394 - 644
Target Start/End: Complemental strand, 2007408 - 2007155
Alignment:
Q  394 agccaaactaaatgatta---ctcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcat 490  Q
    ||||||||||||||| ||   ||||| |||||||||| ||||||||||||||||||||| || |||||||||||||||| |||||||||||| |||||||    
T  2007408 agccaaactaaatgagtagtactcacaaatatatttaattctttaagattaggcgagctcctgaacacacatagagcagttgaaatttccttaaagtcat 2007309  T
Q  491 tgaagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaa 590  Q
     ||||||||| || |||||||||||||||| ||| |||||||||||||||||| ||  ||| ||| |||||||||  ||||||||| ||| || | ||||    
T  2007308 agaagtttatactaaaccaaagatatgttagattaatacaaggtgtaggaagctttactggaacagcacctgcagccaaatactgatgtacaacataaaa 2007209  T
Q  591 attgctataaatcagaatatgatgtttataatacttgcagatcaagagttgcat 644  Q
    ||| || ||||||||||||| ||||||  |||||||||||||||||||||||||    
T  2007208 atttctctaaatcagaatataatgttttaaatacttgcagatcaagagttgcat 2007155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 397 - 650
Target Start/End: Complemental strand, 2011388 - 2011135
Alignment:
Q  397 caaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagt 496  Q
    |||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||    
T  2011388 caaagtaaatgagtactcacaaatatttttagttctttaagattaggcgagcttctgaacacacttagagcagttgaaatttccttcaactcattgaagt 2011289  T
Q  497 ttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaaattgct 596  Q
    |||| |||||||| ||| |  ||| ||| |||||||||||||||||| ||  ||||||||||||||||| |||||||||| ||| ||  ||||| |||||    
T  2011288 ttatacttaaccatagagacattagattaatacaaggtgtaggaagctttagtggcacaacacctgcagctaaatactgatgtacaacggaaaatttgct 2011189  T
Q  597 ataaatcagaatatgatgtttataatacttgcagatcaagagttgcatactcat 650  Q
     | ||||||||||| ||||||  |||||||  ||||||||||||||||| ||||    
T  2011188 ctgaatcagaatataatgtttcaaatactttgagatcaagagttgcatattcat 2011135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 387 - 626
Target Start/End: Complemental strand, 2020651 - 2020414
Alignment:
Q  387 aaagttaagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaag 486  Q
    ||||| ||| |||| ||||||| ||||||| | ||| | ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| |||    
T  2020651 aaagtcaagtcaaagtaaatgagtactcacaattatttctagttttttaagattaggcgagcttctgaacacacatagagcagttgaaatttccttaaag 2020552  T
Q  487 tcattgaagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaag 586  Q
    |||| ||||||||| || |||||||||||||||| ||| |||||||||||||||||| ||  ||| ||||||||||||| |||||| |   ||| || ||    
T  2020551 tcatagaagtttatactaaaccaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagctaaatatt---gtacaacag 2020455  T
Q  587 aaaaattgct-ataaatcagaatatgatgtttataatactt 626  Q
    ||||||||||  || |||||||||| ||||||  |||||||    
T  2020454 aaaaattgctcttagatcagaatataatgttttaaatactt 2020414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 393 - 578
Target Start/End: Original strand, 4334120 - 4334305
Alignment:
Q  393 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 492  Q
    |||| |||||||| || |||||||  |||| |||| || || ||| ||||| |||||||| |||||||| ||||| || |||||||||| || || || |    
T  4334120 aagctaaactaaacgagtactcacagatatttttaatttttgaaggttaggtgagcttctgaacacacaaagagcggccgaaatttcctccatgttatcg 4334219  T
Q  493 aagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaag 578  Q
    ||||||||| ||||  ||||| |  ||| ||| |||||||||||||||||| ||  ||||| |||||||||||  |||||||||||    
T  4334220 aagtttatggttaaggaaagaaaacttagattaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaag 4334305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 393 - 578
Target Start/End: Complemental strand, 3379664 - 3379479
Alignment:
Q  393 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 492  Q
    |||||||||||||| | ||||||| ||||| |  | || |||||| ||||| |||||||| | ||  || || ||||| ||||||||||||||| |||||    
T  3379664 aagccaaactaaataagtactcacaaatatttccaattttttaaggttaggggagcttctgagcaagcaaagggcagccgaaatttccttcaagacattg 3379565  T
Q  493 aagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaag 578  Q
    |||||||| | |||  |||||||  ||| || ||||||||||||||||||| ||  ||  ||| |||||||||  |||||||||||    
T  3379564 aagtttatacataaggaaagataacttagatcgatacaaggtgtaggaagctttactgatacatcacctgcagccaaatactgaag 3379479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 386 - 578
Target Start/End: Complemental strand, 3362660 - 3362468
Alignment:
Q  386 caaagttaagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaa 485  Q
    |||||| ||||||||||||| || ||||||| | ||| |  | || |  ||||||||| |||||| | | ||  || ||||||||  |||||| ||||||    
T  3362660 caaagtcaagccaaactaaacgagtactcacaattatttccaattttcgaagattaggtgagcttttgagcaagcaaagagcagccaaaattttcttcaa 3362561  T
Q  486 gtcattgaagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaag 578  Q
    ||||| ||||| ||||| |||  |||||| | | | ||||||||||||||| |||||| || ||||||||||||||||||  |||||||||||    
T  3362560 gtcatcgaagtctatgcataaggaaagatgtctgagattgatacaaggtgtgggaagctttattggcacaacacctgcagccaaatactgaag 3362468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 410 - 502
Target Start/End: Complemental strand, 3373624 - 3373532
Alignment:
Q  410 tactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagtttatgc 502  Q
    ||||||| ||||| | || || |||||||||||| |||||||| | ||  || ||||||||||||||||||||||||||||||||||||||||    
T  3373624 tactcacaaatatttctaattttttaagattaggtgagcttctgagcaagcaaagagcagctgaaatttccttcaagtcattgaagtttatgc 3373532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 473 - 576
Target Start/End: Complemental strand, 3342107 - 3342004
Alignment:
Q  473 aaatttccttcaagtcattgaagtttatgctta-accaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaat 571  Q
    |||||| |||||||||||||||||||||||||| || ||| || | ||| |||||||||||||||||||||| ||  |||||||| ||||||||  ||||    
T  3342107 aaattttcttcaagtcattgaagtttatgcttacacgaaaaattt-ttagattgatacaaggtgtaggaagctttactggcacaatacctgcagccaaat 3342009  T
Q  572 actga 576  Q
    |||||    
T  3342008 actga 3342004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 252 - 328
Target Start/End: Complemental strand, 2007587 - 2007511
Alignment:
Q  252 gtaactcaagtgtacaagttttagaatcaaacttccaatactagattgacaacttgaaaggcactagacaaatactt 328  Q
    ||||||||||||||||||||||||||   || |||||||||| |||||  |||||||||||||||| | ||||||||    
T  2007587 gtaactcaagtgtacaagttttagaaaataatttccaatactggattgggaacttgaaaggcactaaaaaaatactt 2007511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 2007708 - 2007641
Alignment:
Q  158 tattgattgataaaagatgaaaaagaaggtacatgagtctctcatttaaaggactctactacactaaat 226  Q
    |||||||||||||| ||||||||||||| ||||||||||||| ||||| |||  |||||| ||||||||    
T  2007708 tattgattgataaa-gatgaaaaagaagatacatgagtctctgatttatagggttctactgcactaaat 2007641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 252 - 328
Target Start/End: Complemental strand, 2020788 - 2020712
Alignment:
Q  252 gtaactcaagtgtacaagttttagaatcaaacttccaatactagattgacaacttgaaaggcactagacaaatactt 328  Q
    |||||||||||||||||||||||||| | |||||||||||||| | ||  ||||| ||| | |||| ||||||||||    
T  2020788 gtaactcaagtgtacaagttttagaaactaacttccaatactaaactgggaactttaaatgtactaaacaaatactt 2020712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 250 - 331
Target Start/End: Complemental strand, 2013074 - 2012992
Alignment:
Q  250 ttgtaactcaagtgtacaagttttagaatcaaacttccaatactagattgacaacttg-aaaggcactagacaaatactttaa 331  Q
    ||||| |||||||| |||| |||||||| | ||||||||||||||||||   |||| | |||||||||| |||||||||||||    
T  2013074 ttgtagctcaagtgcacaaattttagaaactaacttccaatactagattaggaactagaaaaggcactaaacaaatactttaa 2012992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 663
Target Start/End: Original strand, 4322365 - 4322503
Alignment:
Q  526 atacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaa-aagaaaaattgctataaatcagaatatgatgtttataatac 624  Q
    |||||||||||||||||| ||  ||||| |||||||||||  ||||||||||| |||| || || ||  | | ||||| ||||||| |||||| ||||||    
T  4322365 atacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcagaacaacaataaaggatttaaattagaatataatgtttttaatac 4322464  T
Q  625 ttgcagatcaagagttgcatactcattattgtagttcat 663  Q
     | | ||||| ||||||||||| ||| || || ||||||    
T  4322465 atacggatcaggagttgcatacacatgatcgttgttcat 4322503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 393 - 634
Target Start/End: Complemental strand, 20935367 - 20935126
Alignment:
Q  393 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 492  Q
    |||| ||||||||||| ||||||| ||||| | || || |  ||||||||| |||||||| | ||  || |||||||| ||||||||||||||||||| |    
T  20935367 aagctaaactaaatgagtactcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttccttcaagtcatcg 20935268  T
Q  493 aagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaaat 592  Q
    ||||||||||| ||  ||||||   ||| ||  |||||||||||||||||| || |||||| |||||||||||  | |||||||||   || ||||||||    
T  20935267 aagtttatgctcaaggaaagatgacttagatccatacaaggtgtaggaagcttttttggcaaaacacctgcagtcagatactgaagcgaaacagaaaaat 20935168  T
Q  593 tgctataaatcagaatatgatgtttataatacttgcagatca 634  Q
     ||  ||| ||||||||| | |||| |||||| | |||||||    
T  20935167 ggcattaattcagaatattaagtttttaatacatacagatca 20935126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 435 - 626
Target Start/End: Complemental strand, 20924324 - 20924133
Alignment:
Q  435 aagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagtttatgcttaaccaaagatatgttatattgatacaaggt 534  Q
    |||||||||||||||| | | ||  || ||| |||| ||||||||| ||||||| |||||||||| || ||   ||||| |||||| ||| |||||| ||    
T  20924324 aagattaggcgagcttttgagcaagcaaagaacagccgaaatttccgtcaagtcgttgaagtttaggcatatggaaagaaatgttagattaatacaaagt 20924225  T
Q  535 gtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaaattgctataaatcagaatatgatgtttataatactt 626  Q
    ||||||||| ||  |||||| ||||||||||  ||||||||||| | || |||| | |  || ||||||||||||| |||||| ||||||||    
T  20924224 gtaggaagctttactggcaccacacctgcagccaaatactgaagcaaaacagaagagtgactctaaatcagaatataatgtttctaatactt 20924133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 393 - 609
Target Start/End: Complemental strand, 20953905 - 20953689
Alignment:
Q  393 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 492  Q
    |||| ||||||||||| ||||||| ||||| | || || |  ||||||||| |||||||| | ||  || |||||||| ||||||||||| | ||  | |    
T  20953905 aagctaaactaaatgagtactcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttcctttaggttgtcg 20953806  T
Q  493 aagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaaat 592  Q
    |||||||||| |||  |||||||  ||| ||  |||||||||||||||||| ||  ||||| |||||||||||  ||||||||||| | |  ||||||||    
T  20953805 aagtttatgcataaggaaagatagcttagataaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcacaccagaaaaat 20953706  T
Q  593 tgctataaatcagaata 609  Q
      || ||||||||||||    
T  20953705 gactctaaatcagaata 20953689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 20954255 - 20954211
Alignment:
Q  21 ggaaagatagtatgcataagagagacatagagcatattaaaactc 65  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  20954255 ggaaagatagtatgcataagagggacatagagcatattaaaactc 20954211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 20936014 - 20935971
Alignment:
Q  21 ggaaagatagtatgcataagagagacatagagcatattaaaactc 65  Q
    ||||||||||||||||||||| || ||||||||||||||||||||    
T  20936014 ggaaagatagtatgcataaga-aggcatagagcatattaaaactc 20935971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 436 - 593
Target Start/End: Complemental strand, 21238373 - 21238216
Alignment:
Q  436 agattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagtttatgcttaaccaaagatatgttatattgatacaaggtg 535  Q
    |||||||| |||||||| | ||  || |||||||| || ||||||||||||||||||||||||||| ||||| ||||||   ||| ||  ||||||||||    
T  21238373 agattaggtgagcttctgagcaagcagagagcagccgagatttccttcaagtcattgaagtttatgtttaacaaaagatggcttagatgaatacaaggtg 21238274  T
Q  536 taggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaaatt 593  Q
    |||||||| ||  ||| || ||||||||||  ||||||||||| |||| |||| ||||    
T  21238273 taggaagctttactggaacgacacctgcagccaaatactgaagcagaacagaagaatt 21238216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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