View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_10 (Length: 593)
Name: NF16006_low_10
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Complemental strand, 21483223 - 21482635
Alignment:
| Q |
1 |
tctgatccacttgcgagattaggtagtggtgataattgcaccaatgttgctgctggtggttctcatgcaaatccagcgaactggatgtattggcagacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21483223 |
tctgatccacttgcgagattaggtagtggtgatagttgcaccaatgttgctgctggtggttctcatgcaaatccagcgaactggatgtattggcagacta |
21483124 |
T |
|
| Q |
101 |
tgaccggtgggacagcagcttccttggcacctgttgttccggctgagccgacgcagcctccagtggaccgtgaccgccccaccatgcagacacagagttc |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21483123 |
tgaccggtgggacagcagcctccttggcacctgttgttccggctgagccgacgcagcctccagtggaccgtgaccgccccaccatgcagacacagagttc |
21483024 |
T |
|
| Q |
201 |
tcaccagggtcgaagtgcatccgataggagacaggtttgtggacttaagctgtatattattgttagatcatatgttttggttgtttatatgatctacgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21483023 |
tcaccagggtcgaagtgcatccgataggagacaggtttgtggacttcagctttatattattgttagattatatgttttggttgtttatatgatctacgat |
21482924 |
T |
|
| Q |
301 |
gtgtgattattagaaatgcatgttaatgcaaaatcatttgttattgaacttgaataagttttaaattatggtcaacaaccgtaattgtggctgcaatata |
400 |
Q |
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| T |
21482923 |
gtgtgattattagaaatgcatgtaaatgcaaaatcatttgttattgaacttgaataagttttaaattatggtcaacaaccgtaattgtggctgcaatata |
21482824 |
T |
|
| Q |
401 |
atggctttaaaggtctctgcaacggcatagcaaccacagttgtggtggtattaatccatttgtctgcagataccgcaatataatggtttgcaacattatt |
500 |
Q |
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| T |
21482823 |
atggttttaaaggtctctgcaacggcgtagcaaccacagttgtggtggtatttatccatttgtctgcagataccgcaatataatggtttgcaacattatt |
21482724 |
T |
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| Q |
501 |
gtagcttatgcagatacggcaatacaatggtttgcaacattactataacttcaactaacagccattacccgatcactcgattataactg |
589 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
21482723 |
gtagcttatgcagatatcgcaatacaatggtttgcaacattactataacttcaactaacagccattatccgatcactcaattataactg |
21482635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 357 - 401
Target Start/End: Complemental strand, 21490796 - 21490752
Alignment:
| Q |
357 |
agttttaaattatggtcaacaaccgtaattgtggctgcaatataa |
401 |
Q |
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| T |
21490796 |
agttttaaattttggtctgcaaccgtaattgtggctgcgatataa |
21490752 |
T |
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