View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_100 (Length: 226)
Name: NF16006_low_100
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_100 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 7978238 - 7978432
Alignment:
| Q |
13 |
agcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactgttcctgctgtactatgtgccttatatccatattctacattttcttgtttt |
112 |
Q |
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| T |
7978238 |
agcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactgttcctgctgtactatgtgccttatatccatattgtacattttcttgtttt |
7978337 |
T |
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| Q |
113 |
cctttatctagactagctgcccaggaaattgtagagtaactgtaggaaaattcaaataccaaagtttcaattaacatgttgtctagtactatatg |
207 |
Q |
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| T |
7978338 |
cctttatctagactagctgcccaggaaattgtagagtaactgtaggaaaattcaaataccaaagtttcaattaacatgttgtctagtactatatg |
7978432 |
T |
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Target: scaffold0531 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 2604 - 2652
Alignment:
| Q |
14 |
gcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactg |
62 |
Q |
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||||||||||| || |||| |||||||||||||||||| | |||||||| |
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| T |
2604 |
gcataggcaaacgcgatagagccaagtgcattaaagaaattaaagactg |
2652 |
T |
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