View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_106 (Length: 210)
Name: NF16006_low_106
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_106 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 4770851 - 4770642
Alignment:
| Q |
1 |
caaccaaccatttaataatccttaaaacaaaaacaatacatttaataagacaggatatacgacctagtgatgtctatgtgtcatttacgatgtccatttc |
100 |
Q |
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| T |
4770851 |
caaccaaccatttaataatccttaaaacaaaaacaatacatttaataagacaggatatacgacctagtgatgtctatgtgttatttatgatgtccatttc |
4770752 |
T |
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| Q |
101 |
ggtgtcaacgtgtcatagtttcgcatatgtacatactgttattaatggtgctgatgatattcttatagatggacaaagcaactttactagccgaggttat |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4770751 |
ggtgtcaatgtgtcatagtttcgcatatgtacatactgttattaatgttgctgatgatattcttatagatggacaaagcaactttactagctgaggttat |
4770652 |
T |
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| Q |
201 |
caggcaagtg |
210 |
Q |
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||||||||| |
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| T |
4770651 |
taggcaagtg |
4770642 |
T |
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