View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_107 (Length: 201)
Name: NF16006_low_107
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_107 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 47716928 - 47717110
Alignment:
| Q |
19 |
tgataaacaactccaaatccgccatgtccaagtttattagcttcagaaaagttccctgtagcaactcgtaatgtctcgaagttgaatagaaatgactcag |
118 |
Q |
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| T |
47716928 |
tgataaacaattccaaatccgccatgtccaagtttattagcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcag |
47717027 |
T |
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| Q |
119 |
cgatttcaatatcatcattatcatcttctatatcttcaaacaatgtacaaggcatgttagaaaaatatgctaatatctaattt |
201 |
Q |
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| T |
47717028 |
cgatttcaatatcattattatcatcttctatatcttcaaacaatgtacaaggcatgttagaaaaatatgctaatatctaattt |
47717110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 47712173 - 47712335
Alignment:
| Q |
19 |
tgataaacaactccaaatccgccatgtccaagtttattagcttcagaaaagttccctgtagcaactcgtaatgtctcgaagttgaatagaaatgactcag |
118 |
Q |
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| T |
47712173 |
tgataaacaactccaaatccgccatgtccaagtttattagcttcagaaaagttccctgtagcaactcgtaatgtctcgaagttgaatagaaatgactcag |
47712272 |
T |
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| Q |
119 |
cgatttcaatatcatcattatca---tcttctatatcttcaaacaatgtacaaggcatgttag |
178 |
Q |
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| T |
47712273 |
cgatttcaatatcatcattatcattttcttctatttcttcaaacatgatacaaggcatgttag |
47712335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 47744721 - 47744906
Alignment:
| Q |
19 |
tgataaacaactccaaatccgccatgtccaagtttattagcttcagaaaagttccctgtagcaactcgtaatgtctcgaagttgaatagaaatgactcag |
118 |
Q |
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| T |
47744721 |
tgataaacaactccaaatccgccatgtccaagtttattatcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgacgcag |
47744820 |
T |
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| Q |
119 |
cgatttcaatatcatcattatcatcttc---tatatcttcaaacaatgtacaaggcatgttagaaaaatatgctaatatctaattt |
201 |
Q |
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| T |
47744821 |
tgatttcaatatcattattttcatcttcttttatatcttcaaacattgtacaaggcatgttaggaaaatatgctaatatctaattt |
47744906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 47759071 - 47759233
Alignment:
| Q |
19 |
tgataaacaactccaaatccgccatgtccaagtttattagcttcagaaaagttccctgtagcaactcgtaatgtctcgaagttgaatagaaatgactcag |
118 |
Q |
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| T |
47759071 |
tgataaacaactccaaatcctccatgtccaagtttattagcttcagaaaagttacttgtagcaacttgtaatgtctcaaagttgaattgcaatgactcag |
47759170 |
T |
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| Q |
119 |
cgatttcaatatcatcattatcatcttct---atatcttcaaacaatg-tacaaggcatgttag |
178 |
Q |
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| T |
47759171 |
ccatgtcaatatcatcattgtcgtcttcttcgatttcttcaaa-aatgatacaaggcatgttag |
47759233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 47770468 - 47770430
Alignment:
| Q |
20 |
gataaacaactccaaatccgccatgtccaagtttattag |
58 |
Q |
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| T |
47770468 |
gataaacaactccaaatccgccttgcccaagtttattag |
47770430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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