View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_11 (Length: 546)
Name: NF16006_low_11
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 13 - 529
Target Start/End: Complemental strand, 4769055 - 4768540
Alignment:
| Q |
13 |
aatatccaagtgaatggtaaattcagcattatactgatttattaaaacaaaaaagttacaaagcttacttgaattggtttagggcaagagtacgtaggtt |
112 |
Q |
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| T |
4769055 |
aatatccaagtgaatggtaaattcagcattatactgatttattaaaacaaaaaagttacaaagcttacttgaattggtttagggcaagagtacgtaggtt |
4768956 |
T |
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| Q |
113 |
gaattatcatgtacannnnnnnncttcatattgatgcgtttgttcattcatgagtgttagctcggtcaaaaaagtccaacatagtaaccttaaggtacat |
212 |
Q |
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| T |
4768955 |
gaattatcatgtacattttttttcttcatattgatgcgtttgttcattcatgagtgttagctcagtcaaaaaaatccaacatagtaaccttaaggtacat |
4768856 |
T |
|
| Q |
213 |
agttcaaatttcctcgaaaacaaaaatgcatgtaagtgtaatttgaagaaaggaagagacaactacccaaagtatcaatggtatgtaaccacttaacacg |
312 |
Q |
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| T |
4768855 |
agttcaaatttcctcgaaaacaaaa-tgcatgtaagtgtaatttgaagaaaggaagagacaactacccaaagtatcaatggtatgtaaccacttaacacg |
4768757 |
T |
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| Q |
313 |
ttctcatttaatggctatgcctaacatgagtaacttccaccttcctccttgaatacgtgtcattttcaggattgccatatatactgagcaatacactgaa |
412 |
Q |
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| T |
4768756 |
ttctcatttaatggctatgcctaacatgagtaacttccaccttcctccttgaatacgtgtcattttcgggattgccatatatactgagcaatacactgaa |
4768657 |
T |
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| Q |
413 |
gcaatacttaactcaccaaaagcagaaaatgatgaacatgaatagcaaagaaacacttgttctactcatagtatcttgcttcctaacttgtggtagcttt |
512 |
Q |
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| T |
4768656 |
gaaatacttaactcaccaaaagcagaaaatgatgaacatgaatagcaaagaaacacttgttctactcatagtatcttgcttcctaacttgtggtagcttt |
4768557 |
T |
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| Q |
513 |
gcacaagatacacttgt |
529 |
Q |
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| T |
4768556 |
gcacaagatacacttgt |
4768540 |
T |
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