View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_12 (Length: 546)
Name: NF16006_low_12
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 33 - 364
Target Start/End: Complemental strand, 12639750 - 12639419
Alignment:
| Q |
33 |
cagcataattatacctgcattggtgttaaacgtgcattaaagaagtcctgagccatacgaaaactttgattcaactcaccacacatgtttgtttgactaa |
132 |
Q |
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| T |
12639750 |
cagcataattatacctgcattggtgttaaacgtgcattaaagaagtcctgagccatacgaaaactttgattcaactcaccacacatgtttgtttgactaa |
12639651 |
T |
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| Q |
133 |
gacaacttctaatagcatcccacttaaaagaacttctaactcttcttttcaaaaacccagaaaaatcatccaaacggtattccaaataagccctattagg |
232 |
Q |
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| T |
12639650 |
gacaacttctaatagcatcccacttaaaagaacttctaactcttcttttcaaaaacccagaaaaatcatccaaacggtattccaaataagccctattagg |
12639551 |
T |
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| Q |
233 |
ttcaatcataccatgaccacgaagagtaaccatgtaaacaaaaataaccaaacaaactagcaagataataagcacaagcatagcaactaggtaaaatatt |
332 |
Q |
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| T |
12639550 |
ttcaatcataccatgaccacgaagagtaaccatgtaaacaaaaataaccaaacaaactagcaagataataagcacaagcatagcaactaggtagaatatt |
12639451 |
T |
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| Q |
333 |
aggagacatgagattctccaaaaggaaccaat |
364 |
Q |
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| T |
12639450 |
aggagacatgagattctccaaaaggaaccaat |
12639419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 359 - 530
Target Start/End: Complemental strand, 8909907 - 8909736
Alignment:
| Q |
359 |
accaatatggctaagagaagttcccaacattatattcagatcagataatcaacctttcatggtggtttccctaactcatgatcacatatctgtttcataa |
458 |
Q |
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| T |
8909907 |
accaatatggctaagagaaattcccaacattatattcagatcagataatcaacctttcatggtggtttccctaactcatgatcacatatctgttttataa |
8909808 |
T |
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| Q |
459 |
tttcttctcaaaaaagcataagtgaccttaaaatactagttgtatatatatgcagtaccatatggaacaatt |
530 |
Q |
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| T |
8909807 |
tttcttctcaaaaaagcataagtgaccttaaaatactagttgtatatatatgcagtaccatatggaacaatt |
8909736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 27778548 - 27778475
Alignment:
| Q |
66 |
gcattaaagaagtcctgagccatacgaaaactttgattcaactcaccacacatgtttgtttgactaagacaact |
139 |
Q |
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| T |
27778548 |
gcattaaagaaatcttgagcaattctataactttgattcaactcagcacacatatttgatgaactaagacaact |
27778475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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