View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16006_low_13 (Length: 523)

Name: NF16006_low_13
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16006_low_13
NF16006_low_13
[»] chr7 (5 HSPs)
chr7 (1-520)||(42414892-42415411)
chr7 (1-149)||(38176208-38176356)
chr7 (35-149)||(8178029-8178143)
chr7 (26-149)||(38195558-38195681)
chr7 (105-149)||(10486560-10486604)
[»] scaffold0094 (1 HSPs)
scaffold0094 (1-520)||(14856-15372)
[»] chr3 (8 HSPs)
chr3 (1-520)||(53919917-53920439)
chr3 (4-263)||(1929998-1930257)
chr3 (1-149)||(1527265-1527413)
chr3 (2-149)||(25500952-25501099)
chr3 (1-75)||(8690524-8690598)
chr3 (1-75)||(9042393-9042467)
chr3 (94-288)||(26924303-26924496)
chr3 (101-154)||(40316324-40316377)
[»] chr2 (9 HSPs)
chr2 (1-371)||(35581374-35581743)
chr2 (1-149)||(31015411-31015559)
chr2 (1-149)||(4318688-4318836)
chr2 (1-149)||(28626322-28626470)
chr2 (202-313)||(29370229-29370340)
chr2 (1-145)||(6409598-6409742)
chr2 (35-149)||(34212768-34212882)
chr2 (1-58)||(29370388-29370445)
chr2 (101-145)||(40357048-40357092)
[»] chr6 (4 HSPs)
chr6 (4-222)||(1100942-1101160)
chr6 (171-292)||(1083075-1083197)
chr6 (171-292)||(1085715-1085837)
chr6 (39-129)||(28909706-28909796)
[»] chr5 (7 HSPs)
chr5 (1-149)||(12186854-12187002)
chr5 (35-149)||(22497645-22497759)
chr5 (1-145)||(4428968-4429112)
chr5 (1-154)||(41787821-41787974)
chr5 (43-149)||(43391059-43391165)
chr5 (102-154)||(32912850-32912902)
chr5 (117-149)||(26917409-26917441)
[»] chr8 (6 HSPs)
chr8 (5-149)||(31385750-31385893)
chr8 (2-150)||(2703929-2704077)
chr8 (35-149)||(8618319-8618433)
chr8 (100-149)||(15074411-15074460)
chr8 (188-257)||(31385930-31385999)
chr8 (104-159)||(11743945-11744000)
[»] chr1 (6 HSPs)
chr1 (35-159)||(4816699-4816823)
chr1 (35-149)||(46342966-46343080)
chr1 (1-149)||(5299436-5299584)
chr1 (1-149)||(46496791-46496938)
chr1 (88-149)||(19023321-19023382)
chr1 (35-149)||(44585732-44585846)
[»] chr4 (1 HSPs)
chr4 (35-149)||(29542205-29542319)


Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 42415411 - 42414892
Alignment:
Q  1 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgt 100  Q
    |||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42415411 aaactcatattatttcatttctcacaatagtttcaatatatgatggaatcaaatcaaactcctggtgacgagcattcaatctagacgccctagctaacgt 42415312  T
Q  101 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgataatgttttaaacgcgactgacattcggatatgatactaccaaactcc 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42415311 atgagcgacaaaattagcttgtctcctaacaaaacttatcctaaagtttggataatgttttaaacgcgaccgacattcggatatgatactaccaaactcc 42415212  T
Q  201 gcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcgacagtcctaatctgccaagccagtagatgg 300  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||    
T  42415211 gcttgattgctattcctatcaaaaatgctatcaaccactagtttgcaatctagttctacaagcaccttcgacagtcctaatctgccaagccaagagatgg 42415112  T
Q  301 catcatgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtggctgcctttacgaacatacctcgatgattccgaatgca 400  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42415111 catcacgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtggctgcctttacgaacatacctcgatgattccgaatgca 42415012  T
Q  401 catacctatcccaaaacagttttgctccttgaacatggctgcgtccacgttgcatttaacaaactcctcatctggtggctgccaaattgctacttgctgc 500  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42415011 catacctatcccaaaacagttttgctcctcgaacatggctgcgtccacgttgcatttaacaaactcctcatctggtggctgccaaattgctacttgctgc 42414912  T
Q  501 tgctgattttgcacaggttc 520  Q
    ||||||||||||||||||||    
T  42414911 tgctgattttgcacaggttc 42414892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 38176208 - 38176356
Alignment:
Q  1 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgt 100  Q
    |||||||||||||||||||  |||||  | ||  ||||||||||||||||||||||||  ||||||||||||| |  ||| | ||| ||||||| ||  |    
T  38176208 aaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaact 38176307  T
Q  101 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 149  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  38176308 atgagcgacaacattcgcttgtctcctaacaaaacttatcttaaagttt 38176356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 8178029 - 8178143
Alignment:
Q  35 aatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaa 134  Q
    |||||||||||||||| |||||||  | ||| ||| ||||| |||| | ||| |||||||||| ||||| || |||||||| |||||||||||| |||||    
T  8178029 aatacaagatggaatccaatcaaaaacgtggcgactagcatacaattttgactccctagctaatgtatgggcaacaaaatttgcttgtctcctagcaaaa 8178128  T
Q  135 cttatcttaaagttt 149  Q
    |||||||||||||||    
T  8178129 cttatcttaaagttt 8178143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 149
Target Start/End: Original strand, 38195558 - 38195681
Alignment:
Q  26 aatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctc 125  Q
    |||||| ||||||||||||||||||||||  ||| ||||||||| ||||| |||  | | ||||| ||||||  ||||||||||| |||| |||||||||    
T  38195558 aatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatgcaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctc 38195657  T
Q  126 ctaacaaaacttatcttaaagttt 149  Q
    |  |  ||||||||||||||||||    
T  38195658 cagatgaaacttatcttaaagttt 38195681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 10486560 - 10486604
Alignment:
Q  105 gcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 149  Q
    |||||| |||| |||||||||||||||||||||||||||||||||    
T  10486560 gcgacataatttgcttgtctcctaacaaaacttatcttaaagttt 10486604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 15372 - 14856
Alignment:
Q  1 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgt 100  Q
    |||||||||| ||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15372 aaactcatattatttcatttctcacaatagtttcaatataaaatggaattaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgt 15273  T
Q  101 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgataatgttttaaacgcgactgacattcggatatgatactaccaaactcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||   ||||||||    
T  15272 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttggataatgttttaaacacgaccgacattcggatatgatac---caaactcc 15176  T
Q  201 gcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcgacagtcctaatctgccaagccagtagatgg 300  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||     
T  15175 gcttgattgctattcctatcaaaaatgctatcaaccactagtttgcaatctagttctataagcaccttcgacagtcctaatcttccaagccaagagatga 15076  T
Q  301 catcatgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtggctgcctttacgaacatacctcgatgattccgaatgca 400  Q
     |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15075 aatcacgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgcggctgcctttacgaacatacctcgatgattccgaatgca 14976  T
Q  401 catacctatcccaaaacagttttgctccttgaacatggctgcgtccacgttgcatttaacaaactcctcatctggtggctgccaaattgctacttgctgc 500  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14975 catacctatcccaaaatagttttgctcctcgaacatggctgcgtccacgttgcatttaacaaacttctcatctggtggctgccaaattgctacttgctgc 14876  T
Q  501 tgctgattttgcacaggttc 520  Q
    ||||||||||||||||||||    
T  14875 tgctgattttgcacaggttc 14856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 53920439 - 53919917
Alignment:
Q  1 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgt 100  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  53920439 aaactcatgttatttcatttctcacaatagtttcaatacaagatggaatcaaaacaaactcttggtgacgagcattcaatctagacgccctagctaacgt 53920340  T
Q  101 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgataatgttttaaacgcgactgacattcggatatgatactaccaaactcc 200  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| ||||| | ||||| ||||||| |||||||||||||    
T  53920339 atgagcgacaaaattagcttgtcttctaacaaaactcatcttaaagtttggataatgttttaaaagcgaccggcattcagatatgagactaccaaactcc 53920240  T
Q  201 gcttgattgct---attcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcgacagtcctaatctgccaagccagtaga 297  Q
    |||||||||||   |||||||||||||||||||||||  |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||  |||    
T  53920239 gcttgattgctgctattcctatcaaaaatgctatcaaacactagtttgcaatccagttctataagcaccttcgacagtcctaatctgccaagccaagaga 53920140  T
Q  298 tggcatcatgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtggctgcctttacgaacatacctcgatgattccgaat 397  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||    
T  53920139 tggcatcacgcaatccaactgcttcttcttctcgtgggagaggtttgccttcataccaggttgtagctgcctttacgaacagacctcgatgattccgaat 53920040  T
Q  398 gcacatacctatcccaaaacagttttgctccttgaacatggctgcgtccacgttgcatttaacaaactcctcatctggtggctgccaaattgctacttgc 497  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53920039 gcacatacctatcccaaaacagttttgctcctcgaacatggctgcatccacgttgcatttaacaaactcctcatctggtggctgccaaattgctacttgc 53919940  T
Q  498 tgctgctgattttgcacaggttc 520  Q
    |||| ||||||||||||||||||    
T  53919939 tgctactgattttgcacaggttc 53919917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 4 - 263
Target Start/End: Complemental strand, 1930257 - 1929998
Alignment:
Q  4 ctcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatg 103  Q
    ||||||| ||||| ||||||| || ||| |||||||||||||||||||||||||||| ||||||||||||||  ||||| |||||||  ||||| |||||    
T  1930257 ctcatattatttcctttctcaaaagagtctcaatacaagatggaatcaaatcaaactgttggtgacgagcatgtaatcttgacgcccctgctaaagtatg 1930158  T
Q  104 agcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgataatgttttaaacgcgactgacattcggatatgatactaccaaactccgct 203  Q
    || |||| ||||||| | ||||||| |||||||||| ||||||||| |||  | || |||| | |  ||||| |||||||| |||||||||||||||| |    
T  1930157 agtgacataattagcatttctcctagcaaaacttattttaaagtttggatgttattgtaaaagagcttgacaatcggatataatactaccaaactccgat 1930058  T
Q  204 tgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagc 263  Q
    |||||  ||||||||||||  ||||||||||| ||||  || ||||||||||||||||||    
T  1930057 tgattcatattcctatcaactatgctatcaaccactagcttacaatctagttctataagc 1929998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 1527413 - 1527265
Alignment:
Q  1 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgt 100  Q
    |||||||||||||||||||  |||||  | ||  ||||||||||||||||||||||||  ||||||||||||| |  ||| | ||| ||||||| ||  |    
T  1527413 aaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaact 1527314  T
Q  101 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 149  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  1527313 atgagcgacaacattcgcttgtctcctaacaaaacttatcttaaagttt 1527265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 2 - 149
Target Start/End: Complemental strand, 25501099 - 25500952
Alignment:
Q  2 aactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgta 101  Q
    |||| |||| ||||||||  ||||||||||||||||||||||||||||||||| |||  || |||||||||||| |||| | || ||||| |||||  ||    
T  25501099 aacttatattatttcattcatcacaatagtttcaatacaagatggaatcaaatgaaagactcggtgacgagcatacaattttgatgcccttgctaaacta 25501000  T
Q  102 tgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 149  Q
    || |||||| |||| ||||||||||| ||| || ||||||||||||||    
T  25500999 tgggcgacacaatttgcttgtctccttacataatttatcttaaagttt 25500952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 8690598 - 8690524
Alignment:
Q  1 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcat 75  Q
    |||||||||| |||||||||||||||||||  |||||||| |||||||||||||||||| | |||||||||||||    
T  8690598 aaactcatattatttcatttctcacaatagagtcaatacacgatggaatcaaatcaaacacctggtgacgagcat 8690524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 9042467 - 9042393
Alignment:
Q  1 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcat 75  Q
    |||||||||| |||||||||||||||||||  |||||||| |||||||||||||||||| | |||||||||||||    
T  9042467 aaactcatattatttcatttctcacaatagagtcaatacacgatggaatcaaatcaaacacctggtgacgagcat 9042393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 288
Target Start/End: Complemental strand, 26924496 - 26924303
Alignment:
Q  94 ctaacgtatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgataatgttttaaacgcgactgacattcggatatgatactacc 193  Q
    |||| ||||||||||||| |||| |||||||| ||  ||||||||||||||| ||| |||  | ||| |||   |  ||||| || ||||| || |||||    
T  26924496 ctaaagtatgagcgacaacattaacttgtctcttagtaaaacttatcttaaactttggatgttctttaaaaaa-gcttgacaatcagatataatgctacc 26924398  T
Q  194 aaactccgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcgacagtcctaatctgccaa 288  Q
    ||||||  |||| ||| ||||||||||||  ||||||| || |||||   | |||||||||||||||||||||||||| || |||||||| ||||    
T  26924397 aaactctacttggttggtattcctatcaactatgctataaattactagcgtacaatctagttctataagcaccttcgataggcctaatctaccaa 26924303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 40316377 - 40316324
Alignment:
Q  101 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgata 154  Q
    |||||| ||| |||||||||||||| |||| |||||||| ||||||||| ||||    
T  40316377 atgagcaacataattagcttgtctcataactaaacttatgttaaagtttggata 40316324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 35581374 - 35581743
Alignment:
Q  1 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgt 100  Q
    |||| ||||| |||||||||||| ||||| ||| |||| |||||||||||||||||||   || ||||| || || |||||| ||| |||| ||  | ||    
T  35581374 aaacgcatattatttcatttctcccaataattttaatataagatggaatcaaatcaaaaatttagtgactaggatacaatcttgacacccttgcaga-gt 35581472  T
Q  101 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgataatgttttaaacgcgactgacattcggatatgatactaccaaactcc 200  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||  |||| |||| |||| |||| ||||||||  |||||||| ||||||| |||    
T  35581473 atgagcgacaatattagtttgtcttctaacaaaacttatcttaaagttatgatattgttgtaaaagcgagtgacattcatatatgatattaccaaagtcc 35581572  T
Q  201 gcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcgacagtcctaatctgccaagccagtagatgg 300  Q
     ||| |||| | |||| |||||  |||||||||||||||| || |||||||||||||||| ||||||| ||  ||||| ||   |||||||| || || |    
T  35581573 actttattggtgttcccatcaattatgctatcaactactacttggcaatctagttctatatgcacctttgatggtcctcatagaccaagccaataaatag 35581672  T
Q  301 catcatgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtggctgccttt 371  Q
    ||||||| ||||| |||||||| ||||||  |||| |||| |||||||||| |||  ||||||||||||||    
T  35581673 catcatgtaatcctactgcttccgcttcttttgggggaggattgccttcatgccaagttgtggctgccttt 35581743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 31015411 - 31015559
Alignment:
Q  1 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgt 100  Q
    |||||||||| ||||||||||||||||||   ||||||||||||||||||||||||||| ||||||||||||||| || ||  ||| || | |||||  |    
T  31015411 aaactcatattatttcatttctcacaatatagtcaatacaagatggaatcaaatcaaacacttggtgacgagcatgcattcgtgacacctttgctaagct 31015510  T
Q  101 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 149  Q
    ||| | ||||||||| ||||| |||||||||||| ||||||||||||||    
T  31015511 atgggtgacaaaatttgcttgcctcctaacaaaatttatcttaaagttt 31015559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 4318688 - 4318836
Alignment:
Q  1 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgt 100  Q
    |||||||||||||||||||  |||||  | ||  ||||||||||||||||||||||||  ||||||||||||| |  ||| | ||| ||||||| ||  |    
T  4318688 aaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaact 4318787  T
Q  101 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 149  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||||    
T  4318788 atgagcgacaacatttacttgtctcctaacaaaacttatcttaaagttt 4318836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 28626322 - 28626470
Alignment:
Q  1 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgt 100  Q
    ||||||||| |||||||||  |||||  | ||  ||||||| ||||||||||||||||  ||||||||||||| |  ||| | ||| || |||| ||  |    
T  28626322 aaactcataccatttcattcatcacacaatttggaatacaaaatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccttagcgaaact 28626421  T
Q  101 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 149  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  28626422 atgagcgacaacattcgcttgtctcctaacaaaacttatcttaaagttt 28626470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 202 - 313
Target Start/End: Complemental strand, 29370340 - 29370229
Alignment:
Q  202 cttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcgacagtcctaatctgccaagccagtagatggc 301  Q
    |||||||  ||||||||||||  ||||||||||| ||||  || ||||||||||||||||||||||| ||||  |||||||| ||||||||  | || ||    
T  29370340 cttgattagtattcctatcaattatgctatcaaccactagcttacaatctagttctataagcacctttgacaagcctaatctaccaagccaagaaatagc 29370241  T
Q  302 atcatgcaatcc 313  Q
    |||||| |||||    
T  29370240 atcatgtaatcc 29370229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 6409742 - 6409598
Alignment:
Q  1 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgt 100  Q
    |||||||||||||||||||  |||||  | ||  |||  ||||||||||||||| |||  ||||||||||||| |  ||| | ||| | ||||| ||  |    
T  6409742 aaactcatatcatttcattcatcacacaatttggaatttaagatggaatcaaattaaagacttggtgacgagcttgtaatattgacactctagcgaaact 6409643  T
Q  101 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaa 145  Q
    | ||||||||| ||| |||| ||||||||||||||||||||||||    
T  6409642 acgagcgacaatattcgcttctctcctaacaaaacttatcttaaa 6409598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 34212882 - 34212768
Alignment:
Q  35 aatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaa 134  Q
    |||| |||||||||||||||||||  | |||||| || |||  ||| | ||| | || |||||  ||| |||||||| ||| ||||||||||||||||||    
T  34212882 aatataagatggaatcaaatcaaagacatggtgaggaacatgtaatattgacactcttgctaagctataagcgacaacattcgcttgtctcctaacaaaa 34212783  T
Q  135 cttatcttaaagttt 149  Q
     ||||||||||||||    
T  34212782 tttatcttaaagttt 34212768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 29370445 - 29370388
Alignment:
Q  1 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaa 58  Q
    ||||| |||| |||||| |||||| || |||||||||||||||| ||||| |||||||    
T  29370445 aaacttatattatttcacttctcaaaagagtttcaatacaagatagaatctaatcaaa 29370388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 40357048 - 40357092
Alignment:
Q  101 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaa 145  Q
    |||||| |||||||||| ||||||| |||| ||||||||||||||    
T  40357048 atgagcaacaaaattagtttgtctcataactaaacttatcttaaa 40357092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 1100942 - 1101160
Alignment:
Q  4 ctcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatg 103  Q
    ||||||| |||||| |||||| || ||| |||||||||||||||||||||||||||| ||||||||||||||  ||||| ||| |||   |||| |||||    
T  1100942 ctcatattatttcacttctcaaaagagtctcaatacaagatggaatcaaatcaaactgttggtgacgagcatgtaatcttgactcccctactaaagtatg 1101041  T
Q  104 agcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgataatgttttaaacgcgactgacattcggatatgatactaccaaactccgct 203  Q
    |||||||||||| | |||||||||| |||||||| ||||||||||| |||  |||| |||| | |  ||||| |||||||| ||||||| ||||| ||||    
T  1101042 agcgacaaaatttgattgtctcctagcaaaacttttcttaaagtttggatgttgttgtaaaagagcttgacaatcggatataatactacaaaacttcgct 1101141  T
Q  204 tgattgctattcctatcaa 222  Q
    || |||  |||| ||||||    
T  1101142 tggttggcattcatatcaa 1101160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 1083075 - 1083197
Alignment:
Q  171 tgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaa-tttgcaatctagttctataagcaccttc 269  Q
    ||||| || |||||||||| |||||||||| |||| ||| | |||||||| |  ||||||||||  || || ||| |||||||||||||||| ||||||     
T  1083075 tgacaatcagatatgatacaaccaaactccacttggttggtcttcctatcgactatgctatcaatcaccaagtttacaatctagttctataaacaccttt 1083174  T
Q  270 gacagtcctaatctgccaagcca 292  Q
    || |  |||||||| ||||||||    
T  1083175 gataagcctaatctaccaagcca 1083197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 1085715 - 1085837
Alignment:
Q  171 tgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaa-tttgcaatctagttctataagcaccttc 269  Q
    ||||| || |||||||||| |||||||||| |||| ||| | |||||||| |  ||||||||||  || || ||| |||||||||||||||| ||||||     
T  1085715 tgacaatcagatatgatacaaccaaactccacttggttggtcttcctatcgactatgctatcaatcaccaagtttacaatctagttctataaacaccttt 1085814  T
Q  270 gacagtcctaatctgccaagcca 292  Q
    || |  |||||||| ||||||||    
T  1085815 gataagcctaatctaccaagcca 1085837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 28909706 - 28909796
Alignment:
Q  39 caagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaa 129  Q
    ||||||||||||||||||||  ||||||||||||| |  ||| | ||| ||||||| ||  |||||| ||||| ||| |||||||||||||    
T  28909706 caagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaactatgagtgacaacattcgcttgtctcctaa 28909796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 12187002 - 12186854
Alignment:
Q  1 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgt 100  Q
    ||||||| || |||| ||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||| ||  |  ||| || | |||||  |    
T  12187002 aaactcaaattattttatttctcacaatagagtcaatacaagatggaatcaaatcaaacacttggtgacgagcatgcatccgtgacacctttgctaagct 12186903  T
Q  101 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 149  Q
    ||| |||||  |||| ||||| |||||||||||||||||||||||||||    
T  12186902 atgggcgacggaattcgcttgcctcctaacaaaacttatcttaaagttt 12186854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 22497645 - 22497759
Alignment:
Q  35 aatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaa 134  Q
    ||||||||| ||||||||||||||  |  ||||||||||||  ||| | ||| |||| |||||  |||||| ||||| ||| ||||||||||||||||||    
T  22497645 aatacaagaaggaatcaaatcaaagacacggtgacgagcatgtaatattgacacccttgctaagttatgagtgacaacattcgcttgtctcctaacaaaa 22497744  T
Q  135 cttatcttaaagttt 149  Q
    |||||||||||||||    
T  22497745 cttatcttaaagttt 22497759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 4429112 - 4428968
Alignment:
Q  1 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgt 100  Q
    |||||||||  ||||||||| |||||||||  |||||| ||||||||||||||||||||  ||| | |||||||| || ||  ||| || | |||||  |    
T  4429112 aaactcataatatttcatttatcacaatagagtcaatagaagatggaatcaaatcaaacatttgctaacgagcatacattcctgacacctttgctaagct 4429013  T
Q  101 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaa 145  Q
    ||| | |||| |||| ||||| |||||||||||||||||||||||    
T  4429012 atgggtgacagaatttgcttgcctcctaacaaaacttatcttaaa 4428968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 41787821 - 41787974
Alignment:
Q  1 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgt 100  Q
    ||||| |||||||||||||||||||||||     |||||||||||||||||| || ||  |||| |||  ||| ||  ||   |||||||| |||||       
T  41787821 aaacttatatcatttcatttctcacaatatgggaaatacaagatggaatcaactcgaaaacttgatgattagcgttatattgtgacgcccttgctaatca 41787920  T
Q  101 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgata 154  Q
    |||||| ||| ||||||||||||||||||||||| |||||| ||||||| ||||    
T  41787921 atgagcaacataattagcttgtctcctaacaaaatttatctcaaagtttggata 41787974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 43391059 - 43391165
Alignment:
Q  43 atggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaacttatctt 142  Q
    ||||||||||||||||  | || |||| ||||| || | | ||| |||| ||||| ||||| |||||| |||| |||||||||| || |||||||||| |    
T  43391059 atggaatcaaatcaaaaacatgatgactagcatacagttttgacacccttgctaaagtatgggcgacataatttgcttgtctccgaataaaacttatcat 43391158  T
Q  143 aaagttt 149  Q
    |||||||    
T  43391159 aaagttt 43391165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 32912902 - 32912850
Alignment:
Q  102 tgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgata 154  Q
    ||||| |||||||| ||| ||| ||||||||||||||||||||||||| ||||    
T  32912902 tgagcaacaaaatttgctcgtcgcctaacaaaacttatcttaaagtttggata 32912850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 26917441 - 26917409
Alignment:
Q  117 gcttgtctcctaacaaaacttatcttaaagttt 149  Q
    ||||||||||||| |||||||||||||||||||    
T  26917441 gcttgtctcctaataaaacttatcttaaagttt 26917409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 31385750 - 31385893
Alignment:
Q  5 tcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatga 104  Q
    |||||| ||||| ||||||| || |||||||| ||||||| ||||||||||||||| ||| |||| |||||  ||| | ||| |||| ||||| ||||||    
T  31385750 tcatattatttcctttctca-aagagtttcaacacaagatagaatcaaatcaaactgttgatgacaagcatgtaattttgacaccct-gctaaagtatga 31385847  T
Q  105 gcgacaaaattagcttgtctcctaacaaaactt-atcttaaagttt 149  Q
    | ||||||||||||||||||||||||||||||| ||||||||||||    
T  31385848 gtgacaaaattagcttgtctcctaacaaaacttaatcttaaagttt 31385893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 2 - 150
Target Start/End: Original strand, 2703929 - 2704077
Alignment:
Q  2 aactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgta 101  Q
    ||||||||||||||||||| ||| |||||    |||| ||||||||||||||||| |    ||||||| ||| | |||  |  |||| || | ||| |||    
T  2703929 aactcatatcatttcatttatcaaaatagaggaaatataagatggaatcaaatcatagatatggtgacaagcgtccaactttaacgctcttgttaaagta 2704028  T
Q  102 tgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttc 150  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  2704029 tgagcgacataatttgcttgtctcctaacaaaacttatcttaaagtttc 2704077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 8618319 - 8618433
Alignment:
Q  35 aatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaa 134  Q
    ||||||||||||||||||||| ||    |||||||||| ||  ||| | ||| |||| |||||  |||||||||||| ||| ||||||||||||||||||    
T  8618319 aatacaagatggaatcaaatcgaagaaatggtgacgaggatgtaatattgacacccttgctaagctatgagcgacaacattcgcttgtctcctaacaaaa 8618418  T
Q  135 cttatcttaaagttt 149  Q
    |||||||| ||||||    
T  8618419 cttatcttgaagttt 8618433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 15074411 - 15074460
Alignment:
Q  100 tatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 149  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||||||||    
T  15074411 tatgagcgacacaatttgcttgtcttctaacaaaacttatcttaaagttt 15074460  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 31385930 - 31385999
Alignment:
Q  188 actaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttct 257  Q
    |||||| ||||||| ||||||| | |||||||||| |||||||||||| ||||  ||||| |||||||||    
T  31385930 actaccgaactccgtttgattggtgttcctatcaagaatgctatcaaccactagcttgcagtctagttct 31385999  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 11744000 - 11743945
Alignment:
Q  104 agcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgataatgtt 159  Q
    ||||||| |||| | ||||||||| |||||| |||||||||||||| |||||||||    
T  11744000 agcgacataatttgtttgtctccttacaaaatttatcttaaagtttggataatgtt 11743945  T

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Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 35 - 159
Target Start/End: Complemental strand, 4816823 - 4816699
Alignment:
Q  35 aatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaa 134  Q
    |||| |||||| ||||||||||||  ||||||||||||||| |||| | ||| |||| |||||  |||| |||||| |||| ||||||||||| ||| ||    
T  4816823 aatataagatgaaatcaaatcaaagacttggtgacgagcatacaattttgactcccttgctaagctatgggcgacataatttgcttgtctccttacataa 4816724  T
Q  135 cttatcttaaagtttcgataatgtt 159  Q
     |||||||||||||| || ||||||    
T  4816723 tttatcttaaagtttggaaaatgtt 4816699  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 46343080 - 46342966
Alignment:
Q  35 aatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaa 134  Q
    ||||||||||| ||||||||||||    ||||||| | |||  ||| | |||  ||| |||||  |||||||||||| ||| ||||||||||||||||||    
T  46343080 aatacaagatgaaatcaaatcaaagatatggtgaccaacatgtaatattgacatccttgctaagatatgagcgacaacattcgcttgtctcctaacaaaa 46342981  T
Q  135 cttatcttaaagttt 149  Q
    ||||||||| |||||    
T  46342980 cttatcttagagttt 46342966  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 5299584 - 5299436
Alignment:
Q  1 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgt 100  Q
    |||||||||| |||| ||| || | ||||||  |||||||||||||||||||||  ||  | ||||||||||||  |||| | | | |||| |||||       
T  5299584 aaactcatattattttattccttaaaatagtagcaatacaagatggaatcaaattgaaaacgtggtgacgagcacacaattttgcctcccttgctaagca 5299485  T
Q  101 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 149  Q
    ||| |||||  |||| |||||||| ||||||||| ||||||||||||||    
T  5299484 atgggcgaccgaattcgcttgtcttctaacaaaatttatcttaaagttt 5299436  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 46496938 - 46496791
Alignment:
Q  1 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgt 100  Q
    |||||||||| |||||||| |||| | ||||  ||||||||||||||||||||| |||  | ||||||||||||| |||  | | | || | |||||       
T  46496938 aaactcatattatttcattcctcaga-tagtagcaatacaagatggaatcaaataaaaaacctggtgacgagcatacaaatttgcctcctttgctaagca 46496840  T
Q  101 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 149  Q
    ||| ||||   |||||| ||||||||||||||||| |||||||||||||    
T  46496839 atgtgcgatcgaattagtttgtctcctaacaaaacctatcttaaagttt 46496791  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 19023321 - 19023382
Alignment:
Q  88 ccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 149  Q
    ||||||||||  |||||| || | |||| | |||||||||||||||||||||||||||||||    
T  19023321 ccctagctaagctatgagtgatataatttgtttgtctcctaacaaaacttatcttaaagttt 19023382  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 44585732 - 44585846
Alignment:
Q  35 aatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaa 134  Q
    |||||| |||||||| ||||||||  ||||||||| | |||  ||  |  || |||| |||||  |||||||||||| ||| |  |||||||| ||||||    
T  44585732 aatacatgatggaattaaatcaaaaacttggtgacaaacatgtaacatcaacacccttgctaagctatgagcgacaacattcgtctgtctcctgacaaaa 44585831  T
Q  135 cttatcttaaagttt 149  Q
    |||||||||||||||    
T  44585832 cttatcttaaagttt 44585846  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 29542319 - 29542205
Alignment:
Q  35 aatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaa 134  Q
    |||||||||||||||| |||||||  | ||||||||||| | |||| | ||| ||||||||||   ||| |||||| |||| |||||| |||||||||||    
T  29542319 aatacaagatggaatcgaatcaaaaacatggtgacgagcgtacaattttgactccctagctaagccatgggcgacataatttgcttgtatcctaacaaaa 29542220  T
Q  135 cttatcttaaagttt 149  Q
     ||||||||||||||    
T  29542219 tttatcttaaagttt 29542205  T

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