View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_15 (Length: 490)
Name: NF16006_low_15
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 9470657 - 9470238
Alignment:
| Q |
18 |
cactatgtatgtgctaaactttgctattnnnnnnnccagacaaaaaagttctcatacaatgcgatagaatagaaaataacaacagcaataagttcatcaa |
117 |
Q |
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| T |
9470657 |
cactatgtatgtgctaaactttgctattaaaaaaaccagacaaaaaagttctcatacaatgcgatagaatagaaaataacaacagcaataagttcatcaa |
9470558 |
T |
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| Q |
118 |
agtgactgtgcaccaaccagcaatatctcatggtcggatgttctttggcaactaggtataccacattataagctcaacatgaaattggtccttgatttag |
217 |
Q |
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| T |
9470557 |
agtgactgtgcaccaaccagcaatatctcatggtcggatgttctttggcaac---------cacattataagctcaacatgaaattggtccttgatttag |
9470467 |
T |
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| Q |
218 |
aatttgtttctgcttaaatttaattctttgtcagtgtaannnnnnnatgctatcaagcaatcacaatcaatcctatatctaaaatttaacatcactacan |
317 |
Q |
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| T |
9470466 |
aatttgtttctgcttaaatttaattctttgtcagtgtaatttttttatgctatcaagcaatcacaatcaatcctatatctaaaatttaacatcactacat |
9470367 |
T |
|
| Q |
318 |
nnnnnnctttgaaaatgctaacttgtgattatccatgtcaagctatgatattaattaaacaaattaattgtcttttagttattcaaatagaaaattcatt |
417 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9470366 |
ttttttctttggaaatgctaacttgtgattatccatgtcaagctatgatattaattaaacaaattaattgtcttttagttattcaaatagaaacttcatt |
9470267 |
T |
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| Q |
418 |
atcaagataatcataattgtaatgtttta |
446 |
Q |
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|||||||| |||||||||||||||||||| |
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| T |
9470266 |
atcaagattatcataattgtaatgtttta |
9470238 |
T |
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