View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_18 (Length: 454)
Name: NF16006_low_18
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 33397758 - 33398196
Alignment:
| Q |
1 |
tcaagtgaagtaagatttgggaacctttggaagagacgagagaaggatgatggattgtagattaatgtgacggaatgcacagaacggtttgttacgtcga |
100 |
Q |
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| T |
33397758 |
tcaagtgaagtaagatttgggaacctttggaagagacgagagaaggatgatggattgtagattaatgtgacggaatgcacagaacggtttgttacgtcga |
33397857 |
T |
|
| Q |
101 |
gtagttgtttggacacaagggatagagtctctaagtaatgattactgttctcaacgttgaggttgttaaggagtttggataacacatattcccagcaatc |
200 |
Q |
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| T |
33397858 |
gtagttgtttggacacaagggatagagtctctaagtaatgattacggttctcaacgttgaggttgttaaggagtttggataacacatattcccagcaatc |
33397957 |
T |
|
| Q |
201 |
atcctgtaaacctgctcctgcaattcttcttctggaacccatttctttcttctccttaaccctaactcttcgattcgattcgattcgattgtgtttcttt |
300 |
Q |
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| T |
33397958 |
atcctgtaaacctgctcctgcaattctttttctggaacccatttctttcttctccttaaccctaactcttcgattcgattc-tgtcgattgtgtttcttt |
33398056 |
T |
|
| Q |
301 |
agcccagagttgattggattggagtatattatatactagtgcttagcgcgttctgttcataaatcgtggaaaaacaaaaccacctcagtcctgtctctgt |
400 |
Q |
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| T |
33398057 |
agcccagagttgattggattggagtatattatatactagtacttagcgtgttctgttcataaatcgtggaaaaacaaaaccacctcagtcctg--tctgt |
33398154 |
T |
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| Q |
401 |
caataatttatttatgtccgcttatctttcttctttcttctc |
442 |
Q |
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| T |
33398155 |
caataatttatttatgtccgcttatctttcttctttcttctc |
33398196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 33707864 - 33707742
Alignment:
| Q |
13 |
agatttgggaacctttggaagagacgagagaaggatgatggattgtagattaatgtgacggaatgcacagaacggtttgttacgtcgagtagttgtttgg |
112 |
Q |
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||||||||||||||||||||||| ||||||| | | ||| |||||| |||||| | | ||||| | ||||| ||| || ||| ||||| |||||||| |
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| T |
33707864 |
agatttgggaacctttggaagaggcgagagagtggtaatgtattgtatattaatctcaaggaatatatagaactgttggtgacggagagtaattgtttgg |
33707765 |
T |
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| Q |
113 |
acacaagggatagagtctctaag |
135 |
Q |
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| T |
33707764 |
atacaagggatagagtctctaag |
33707742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 37579515 - 37579466
Alignment:
| Q |
172 |
agtttggataacacatattcccagcaatcatcctgtaaacctgctcctgc |
221 |
Q |
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| T |
37579515 |
agtttggatatcacatattcccagcaatcgtccggtaaaccacctcctgc |
37579466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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