View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_21 (Length: 396)
Name: NF16006_low_21
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 115 - 388
Target Start/End: Original strand, 24077391 - 24077664
Alignment:
| Q |
115 |
tttgggctagctgttgctctttaacttggttcttagagactgcttttctagcgcgtttcatttctttggaagaagactctgaatccgatgcgatggaaac |
214 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
24077391 |
tttgggcaagctgttgctctttaacttgattcttagagactgcttttctagcgcgtttcttttctttggaagaagactctgaatctgatgcgatggaaac |
24077490 |
T |
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| Q |
215 |
actattttccttatggttttcttgttctaacacaagaatgcgctttttaatctcaccaactagattgtggtgatgctctaggttgcaatctgaaatgcac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24077491 |
actattttccttatggttttcttgttctaacacaagaatgcgctttttaatctcaccaactagattgtggtgatgctctaggttgcaatctgaaatgcac |
24077590 |
T |
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| Q |
315 |
tgtagaatatccttcagaatagcgatttctgtatctctggccttaacctgaattcacatttaatatattcttgg |
388 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24077591 |
tgtagaatatccttcagactagcaatttctgtatctctggccttaacctgaattcacatttaatatattattgg |
24077664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 24077321 - 24077362
Alignment:
| Q |
72 |
tgaggttgtttttcgtcacggtgttgcactctaacttgattc |
113 |
Q |
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| T |
24077321 |
tgaggttgtttttcttcacggtgttgcactctaacttgattc |
24077362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 115 - 383
Target Start/End: Complemental strand, 16440175 - 16439913
Alignment:
| Q |
115 |
tttgggctagctgttgctctttaacttggttcttagagactgcttttctagcgcgtttcatttctttggaagaagactctgaatccgatgcgatggaaac |
214 |
Q |
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|||||||||||| ||||||||||||||| || |||||||| |||||||||| ||||| | || |||||| ||||||||| || ||||| ||| |
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| T |
16440175 |
tttgggctagctcttgctctttaacttgatttgtagagacttcttttctagcacgttttttctcgttggaaagagactctga------tgagatggcaac |
16440082 |
T |
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| Q |
215 |
actattttccttatggttttcttgttctaacacaagaatgcgctttttaatctcaccaactagattgtggtgatgctctaggttgcaatctgaaatgcac |
314 |
Q |
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|||||||||| | ||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16440081 |
actattttccctctggttttcttgttctaatacaaaaatgcgcttcttaatctcaccaactagattgtggtgatactctaggttgcaatctgaaatgcac |
16439982 |
T |
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| Q |
315 |
tgtagaatatccttcagaatagcgatttctgtatctctggccttaacctgaattcacatttaatatatt |
383 |
Q |
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|||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16439981 |
tgtagaatatccctcagactagcaatttctgtatctctggccttaacctgaattcacatttaatatatt |
16439913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 16440245 - 16440212
Alignment:
| Q |
72 |
tgaggttgtttttcgtcacggtgttgcactctaa |
105 |
Q |
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| T |
16440245 |
tgaggttgtttttcttcacggtgttgcactctaa |
16440212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 16440535 - 16440494
Alignment:
| Q |
24 |
acttaactactactaaataatgaactcacaccggttcaccaa |
65 |
Q |
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| T |
16440535 |
acttaactactaataaataatgaattcacaccagttcaccaa |
16440494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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