View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_22 (Length: 390)
Name: NF16006_low_22
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 16 - 373
Target Start/End: Complemental strand, 44125427 - 44125070
Alignment:
| Q |
16 |
cagaacctgtgaccaccaccaacgacgacgccgaattcatccgttcaagttgcaacgcaacactctaccctgacatatgctacacttccctctctcgtta |
115 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44125427 |
cagaacctccgaccaccaccaacgacgacgccgaattcatccgttcaagttgcaacgcaacactctaccctgacatatgctacacttccctctctcgtta |
44125328 |
T |
|
| Q |
116 |
cgccaatgcagttcaacagaatcctggccaactcgctcgcatcgccatagccgtaagcttctccaaagtccaccgaactgcctcttatctctccaatctc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44125327 |
cgccaatgcagttcaacagaatcctggccaactcgctcgcatcgccatagccgtaagcttctccaaagtccaccgaactgcctcttatctctccaatctc |
44125228 |
T |
|
| Q |
216 |
actcgcgaagcagattacagcggtagttcacgcgccgcactcgctctccatgactgtttctcaaatcttgacgatgctgttgatgaaatccgtggttcgc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44125227 |
actcgcgaagcagattacagcggtagttcacgcgccacactcgctctccatgactgtttctcaaatcttgacgatgctgttgatgaaatccgtggttcgc |
44125128 |
T |
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| Q |
316 |
ttaaacagatgcggcagattggagccgccggaactggcgccggtgccggagcagattc |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44125127 |
ttaaacagatgcggcagattggagccgccggaactggcgccggtgccggagcagattc |
44125070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 37 - 373
Target Start/End: Complemental strand, 50037272 - 50036936
Alignment:
| Q |
37 |
acgacgacgccgaattcatccgttcaagttgcaacgcaacactctaccctgacatatgctacacttccctctctcgttacgccaatgcagttcaacagaa |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50037272 |
acgacgacgccgaattcatccgttcaagttgcaacgcaacactctaccctgacatatgctacacttccctctctcgttacgccaatgcagttcaacagaa |
50037173 |
T |
|
| Q |
137 |
tcctggccaactcgctcgcatcgccatagccgtaagcttctccaaagtccaccgaactgcctcttatctctccaatctcactcgcgaagcagattacagc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50037172 |
tcctggccaactcgctcgcatcgccatagccgtaagcttctccaaagtccaccgaactgcctcttatctctccaatctcactcgcgaagcagattacagc |
50037073 |
T |
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| Q |
237 |
ggtagttcacgcgccgcactcgctctccatgactgtttctcaaatcttgacgatgctgttgatgaaatccgtggttcgcttaaacagatgcggcagattg |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50037072 |
ggtagttcacgcgccgcactcgctctccatgactgtttctcaaatcttgacgatgctgttgatgaaatccgtggttcgcttaaacagatgcggcagattg |
50036973 |
T |
|
| Q |
337 |
gagccgccggaactggcgccggtgccggagcagattc |
373 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
50036972 |
gagccgccggaactggcgccggtgccggagcagattc |
50036936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 37 - 373
Target Start/End: Complemental strand, 50044494 - 50044158
Alignment:
| Q |
37 |
acgacgacgccgaattcatccgttcaagttgcaacgcaacactctaccctgacatatgctacacttccctctctcgttacgccaatgcagttcaacagaa |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50044494 |
acgacgacgccgaattcatccgttcaagttgcaacgcaacactctaccctgacatatgctacacttccctctctcgttacgccaatgcagttcaacagaa |
50044395 |
T |
|
| Q |
137 |
tcctggccaactcgctcgcatcgccatagccgtaagcttctccaaagtccaccgaactgcctcttatctctccaatctcactcgcgaagcagattacagc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50044394 |
tcctggccaactcgctcgcatcgccatagccgtaagcttctccaaagtccaccgaactgcctcttatctctccaatctcactcgcgaagcagattacagc |
50044295 |
T |
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| Q |
237 |
ggtagttcacgcgccgcactcgctctccatgactgtttctcaaatcttgacgatgctgttgatgaaatccgtggttcgcttaaacagatgcggcagattg |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50044294 |
ggtagttcacgcgccgcactcgctctccatgactgtttctcaaatcttgacgatgctgttgatgaaatccgtggttcgcttaaacagatgcggcagattg |
50044195 |
T |
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| Q |
337 |
gagccgccggaactggcgccggtgccggagcagattc |
373 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
50044194 |
gagccgccggaactggcgccggtgccggagcagattc |
50044158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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