View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_23 (Length: 386)
Name: NF16006_low_23
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 32522618 - 32522844
Alignment:
| Q |
10 |
ataattctggtcaattacaattgggttttggacattaaccatgattgcatcttggaaaaagatgttcctcacaaatccattgctaggtctaccccaagat |
109 |
Q |
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| T |
32522618 |
ataattctggtcaattacaattgggttttggacattaaccatgattgcatcttggaaaaagatgttcctcacaaatccattgctaggtctaccccaagat |
32522717 |
T |
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| Q |
110 |
tttattctaacaccattttgagttcctgtgaatgtaactgttttaactgtcacattttgtactcctggttcgttcaatttccatcctaagcttccaatac |
209 |
Q |
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| T |
32522718 |
tttattctaacaccattttgagttcctgtgaatgtaactgttttaactgtcacattttgtactcctggttcattcaatttccatcctaaacttccaatac |
32522817 |
T |
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| Q |
210 |
tgcaacaaatatccaacatgcaatgtt |
236 |
Q |
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| T |
32522818 |
tgcaacaaatatccaacatgcaatgtt |
32522844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 299 - 368
Target Start/End: Original strand, 32522907 - 32522976
Alignment:
| Q |
299 |
gaaccttattccatgtcctggtccacatgcaatgttttcaatccacaaattacttgtaccagggccaatt |
368 |
Q |
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| T |
32522907 |
gaaccttattccatgtcccggtccacatgcaatgttttcaatccacaaattacttgtaccagggccaatt |
32522976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 218
Target Start/End: Complemental strand, 10882464 - 10882326
Alignment:
| Q |
80 |
acaaatccattgctaggtctaccccaagattttattctaacaccattttgagttcctgtgaatgtaactgttttaactgtcacattttgtactcctggtt |
179 |
Q |
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| T |
10882464 |
acaaatccattgctaggcttcccccatgattttattctaaagccattttgagtcttagtgaatgtagttgatttgactgtcacatttttaacacctggtt |
10882365 |
T |
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| Q |
180 |
cgttcaatttccatcctaagcttccaatactgcaacaaa |
218 |
Q |
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| T |
10882364 |
cattcagtttccatcctaagcttccaatgctacaacaaa |
10882326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 2425789 - 2425632
Alignment:
| Q |
10 |
ataattctggtcaattacaattgggttttggacattaaccatgattgcatcttggaaaaagatgttcctcacaaatccattgctaggtctaccccaagat |
109 |
Q |
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|||||| |||||||| ||||| || ||||| |||||||||||| | |||| ||| |||| |||||| || | || |||||||||||||| |||||||| |
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| T |
2425789 |
ataattttggtcaatcacaataggattttgaacattaaccatggtagcatgttgaaaaatgatgtttcttgcgaagccattgctaggtctcccccaagac |
2425690 |
T |
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| Q |
110 |
tttattctaacaccattttgagttcctgtgaatgtaactgttttaactgtcacatttt |
167 |
Q |
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| T |
2425689 |
ttgattcttacaccattttctgttccaataaattttattgttttaactgtcacgtttt |
2425632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 2425468 - 2425420
Alignment:
| Q |
301 |
accttattccatgtcctggtccacatgcaatgttttcaatccacaaatt |
349 |
Q |
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||||||| ||||| |||||||||||||| ||| |||| ||||||||||| |
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| T |
2425468 |
accttatgccatgacctggtccacatgctatgctttctatccacaaatt |
2425420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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