View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_24 (Length: 384)
Name: NF16006_low_24
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 68 - 365
Target Start/End: Complemental strand, 21901850 - 21901553
Alignment:
| Q |
68 |
tgtagctgaattcaaacaaatcgctattttaaataatttgtgattcacaacgctctaatagattatatttccttaaaaattggttacctccttagttttc |
167 |
Q |
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| T |
21901850 |
tgtagctgaattcgaacaaatcgctattttaaataatttgtgattcacaacgctctaatagattatatttccttaaaaattggttacctccttagttttc |
21901751 |
T |
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| Q |
168 |
ttatgtgtaagaagattttgatgcttcaactgagcaacctgtcatgnnnnnnnnnnnnnnnnnccaacgaactcaatcaaatatcgacaactgaattaaa |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21901750 |
ttatgtgtaagaagattttgatgcttcaactgagcaacctgtcatgaaaacaaaacaaaaaaaccaacgaactcaatcaaatatcgacaactgaattaaa |
21901651 |
T |
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| Q |
268 |
gaggttgcaaattcaattaagctaaagtaaggttagaagttcaaaaatgttagaatgaagtttatatacataaaaacttcatcataccttgcgcaagt |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21901650 |
gaggttgcaaattcaattaagctaaagtaaggttagaagttcaaaaatgttagaatgaagtttatatacataaaaacttcatcataccttgcgcaagt |
21901553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 21901908 - 21901880
Alignment:
| Q |
12 |
gaagaaaatattgtcgaatagaagctata |
40 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
21901908 |
gaagaaaatattgtcgaatagaagctata |
21901880 |
T |
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