View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_25 (Length: 383)
Name: NF16006_low_25
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 36140573 - 36140196
Alignment:
| Q |
1 |
attacgaagtggacagcttaagaccctaagagtttacttgtttcaagatatgcgtatatattttggaaaatatgagattgggaatatagtgctcccatat |
100 |
Q |
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| T |
36140573 |
attacgaagtggacagcttaagaccctaagagtttacttgtttcaaaatatgcttatatattttggaaaatatgagattgggaatatagtgctcccgtat |
36140474 |
T |
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| Q |
101 |
ttgatccaaggtttaaaaagtttttataatttaatggattatgaggaacattttttgttcatattttctctcctta---cccattgtgcaggtgggaatt |
197 |
Q |
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| T |
36140473 |
ttgatccaaggtttaaaaagtttttgtaatttaatggattatgaggaacattttttgttcatattttctctccttaattcccattgtgtaggtgggaatt |
36140374 |
T |
|
| Q |
198 |
ttatgcgccaaggagaataaaaatcattttgaaatgtaaaccacccttcaccatttccagttaaacgagagagagaggga----------gtgagtttga |
287 |
Q |
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| T |
36140373 |
ttatgcgccaaggagaataaaaatcattttgaaatgtaaaccacccttcaccatttccagttaaacgagagagagagagagagagagagggtgagtttga |
36140274 |
T |
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| Q |
288 |
gggtggggttatattcccattaatgaagggtgttgtttctaattctgccgttttttcctatatttccatattcctaat |
365 |
Q |
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| T |
36140273 |
gggtggggttatattcccattaatgaagggtgttgtttcttattctgccgttttttcctatatttccatattcctaat |
36140196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 30821199 - 30820946
Alignment:
| Q |
17 |
cttaagaccctaagagtttacttgtttcaagatatgcgtatatattttggaaaatatgagattgggaatata--gt---gctcccatatttgatccaagg |
111 |
Q |
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| T |
30821199 |
cttaagatcttaagtgtgtacttctttcaagatatgcctatatatttcgggataaatgagactgggaatgtaacgtaacggtcccatattttatttaagg |
30821100 |
T |
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| Q |
112 |
tttaaaaagtttttataatttaatggattatgaggaacatttttt-gttcatattttctctccttacccattgtgcagg-tgggaattttatgcgccaag |
209 |
Q |
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|||||||| ||| ||||| | |||||||||||||| |||||| |||||||||||| || |||||| ||| ||||||| ||||| |||||| |
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| T |
30821099 |
tttaaaaaaactttgcaatttgagggattatgaggaacttttttttgttcatattttcattct-----cattgtaaagggtgggaatcttatgtgccaag |
30821005 |
T |
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| Q |
210 |
gagaataaaaatcattttgaaatgtaaaccacccttcaccatttccagttaaacgagag |
268 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
30821004 |
gagaatcaaaatcattttgaaatgtaaaccacccttcactgtttccagttaaactagag |
30820946 |
T |
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