View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_26 (Length: 381)
Name: NF16006_low_26
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 51731231 - 51731583
Alignment:
| Q |
16 |
cataatcaagatcacgaggtagtcccactcctccaaacttggggttaccagtgaacttgagttcaactaccttagagttaaacctaatattctttaccaa |
115 |
Q |
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| T |
51731231 |
cataatcaagatcatgaggtagtcccactcctccaaacttggggttcccagtgaacttgagttcaactaccttagagttaaacctaatattctttaccaa |
51731330 |
T |
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| Q |
116 |
atcaaagtgtttagcatatgatcgcaaataatctaacacttccgtgtgtgtaggaaaatcaggattatctctattaggccaagggaaatcagtgaattca |
215 |
Q |
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| T |
51731331 |
atcaaagtgtttagcatatgatcgcaaataatccaacacttccgtgtgtgtaggaaaatcaggattatctctattaggccaagggaaatcagtgaattca |
51731430 |
T |
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| Q |
216 |
taatctctacgatgagattgaagctttgtagaattgtatgtacaatgcttccataccccaccaatggagtcagtggcttcaaatacaataggattgtggt |
315 |
Q |
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| T |
51731431 |
taatctctacaatgagattgaagctttgtagaattgtacgtacaatgcttccataccccaccaatggagtcagtggcttcaaatacaataggattgtggt |
51731530 |
T |
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| Q |
316 |
gtaatagttgttttgcaattgctatgccacttactccacctcctattatgcct |
368 |
Q |
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| T |
51731531 |
gtaatagctgttttgcaattgctatgccacttactccacctcctattatgcct |
51731583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 19192283 - 19192341
Alignment:
| Q |
273 |
ccaccaatggagtcagtggcttcaaatacaataggattgtggtgtaatagttgttttgc |
331 |
Q |
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| T |
19192283 |
ccaccaatggagttagtggcttcaaaaacaatagggttgtagtgtgatagttgttttgc |
19192341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 273 - 353
Target Start/End: Complemental strand, 19054511 - 19054431
Alignment:
| Q |
273 |
ccaccaatggagtcagtggcttcaaatacaataggattgtggtgtaatagttgttttgcaattgctatgccacttactcca |
353 |
Q |
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|||||||| || |||||||||||||| |||||||| |||| |||| ||||||||||||| | |||| |||||| |||||| |
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| T |
19054511 |
ccaccaattgaatcagtggcttcaaaaacaatagggttgtagtgtgatagttgttttgctacggctaagccactaactcca |
19054431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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