View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16006_low_28 (Length: 369)

Name: NF16006_low_28
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16006_low_28
NF16006_low_28
[»] chr2 (6 HSPs)
chr2 (14-354)||(16639315-16639655)
chr2 (295-354)||(18703765-18703824)
chr2 (296-351)||(34878761-34878816)
chr2 (296-354)||(38417719-38417777)
chr2 (307-352)||(7700280-7700325)
chr2 (296-344)||(27447832-27447880)
[»] chr6 (3 HSPs)
chr6 (296-354)||(1975371-1975429)
chr6 (307-354)||(16461747-16461794)
chr6 (319-347)||(17848977-17849005)
[»] chr1 (9 HSPs)
chr1 (300-354)||(23347790-23347844)
chr1 (297-354)||(9516773-9516830)
chr1 (317-353)||(10781365-10781401)
chr1 (306-354)||(281154-281202)
chr1 (297-356)||(10638038-10638097)
chr1 (319-353)||(9539762-9539796)
chr1 (316-354)||(34912305-34912343)
chr1 (319-353)||(39299269-39299303)
chr1 (297-354)||(43909383-43909440)
[»] chr5 (8 HSPs)
chr5 (295-354)||(35676373-35676431)
chr5 (315-354)||(33824852-33824891)
chr5 (297-354)||(5568945-5569000)
chr5 (320-354)||(36744891-36744925)
chr5 (307-354)||(980267-980314)
chr5 (296-354)||(5069771-5069829)
chr5 (316-354)||(34751195-34751233)
chr5 (318-354)||(22536910-22536946)
[»] chr4 (6 HSPs)
chr4 (295-354)||(52849846-52849905)
chr4 (305-354)||(2813928-2813977)
chr4 (317-354)||(36247778-36247815)
chr4 (296-348)||(1111929-1111981)
chr4 (317-354)||(4377187-4377224)
chr4 (316-352)||(1758219-1758255)
[»] chr8 (6 HSPs)
chr8 (317-354)||(44873236-44873273)
chr8 (299-354)||(6802836-6802891)
chr8 (305-356)||(29866101-29866152)
chr8 (296-354)||(7681481-7681539)
chr8 (296-352)||(29841288-29841344)
chr8 (316-354)||(10381371-10381409)
[»] chr3 (9 HSPs)
chr3 (317-354)||(24309827-24309864)
chr3 (296-352)||(30136514-30136569)
chr3 (296-352)||(30142643-30142698)
chr3 (296-352)||(30146065-30146120)
chr3 (299-342)||(6714498-6714541)
chr3 (316-354)||(19832044-19832082)
chr3 (296-354)||(35504223-35504281)
chr3 (317-354)||(7856448-7856485)
chr3 (305-354)||(36475406-36475455)
[»] chr7 (5 HSPs)
chr7 (306-354)||(7899424-7899472)
chr7 (307-354)||(26050105-26050152)
chr7 (307-354)||(26059464-26059511)
chr7 (299-344)||(26782119-26782164)
chr7 (317-354)||(49143956-49143993)
[»] scaffold0535 (1 HSPs)
scaffold0535 (309-354)||(9615-9660)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 354
Target Start/End: Complemental strand, 16639655 - 16639315
Alignment:
Q  14 aagaatattgatgatacataaataaaggtttaagtgtctaaaaactttgtatggaaaatattatggtaatgacggcttgaattgaatttacaaaga--aa 111  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||    
T  16639655 aagaatattgatgatacataaataaaggcttaagtgtctaaaaactttgtatggaaaatattatagtaatgacggcttgaattgaatttacaaagaaaaa 16639556  T
Q  112 aataagggaacgcgccgtagatttggaccatcttcaagtgtgatgcaattggaaatatataatgcctcaagtgaaacgttttttccctnnnnnnnnnngt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||          ||    
T  16639555 aataagggaacgcgccgtagatttggaccatcttcaagtgtgatgcaattggaaatatataatgtctcaagtgaaacgttttttccct-aaaaaaaaagt 16639457  T
Q  212 gaaagtttttgaaaatgtttttaaagtaatatatacacatgtggttgtaggatcatttaatgtgttgggatgacacggacaga-ttagacattcggtata 310  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||| |||| ||||||||||||||||| |||| |||  || ||||||||| ||||||    
T  16639456 gaaagtttttgaaaatgtttttaaagta--atatacacatgtggttgaaggaacatttaatgtgttgggaggacatggatggatttagacatttggtata 16639359  T
Q  311 tatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    | | || |||||||||||||||||||||||| ||||||||||||    
T  16639358 tgtatgactaaaattttaaagaaacaataatacaaactatatta 16639315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 18703824 - 18703765
Alignment:
Q  295 ttagacattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    ||||||||| | ||||  |||||||||||||| |||||||||||||||||||||||||||    
T  18703824 ttagacatttgatatacgtgtggctaaaatttcaaagaaacaataatgcaaactatatta 18703765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 34878816 - 34878761
Alignment:
Q  296 tagacattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactata 351  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||| | ||||||    
T  34878816 tagacatttggtatatatggggctaaaattttaaagaaacaataatgaagactata 34878761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 38417719 - 38417777
Alignment:
Q  296 tagacattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||| ||||||||||| |||| ||||||||||||||||| | |||||||| ||||||||    
T  38417719 tagatattcggtatatgtgtgcctaaaattttaaagaaaaactaatgcaagctatatta 38417777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 7700280 - 7700325
Alignment:
Q  307 tatatatgtggctaaaattttaaagaaacaataatgcaaactatat 352  Q
    ||||| |||||||||||||| ||||||||||||||| |||||||||    
T  7700280 tatatgtgtggctaaaatttcaaagaaacaataatgtaaactatat 7700325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 27447880 - 27447832
Alignment:
Q  296 tagacattcggtatatatgtggctaaaattttaaagaaacaataatgca 344  Q
    |||||||| | ||||| |||||||||||||| ||||||| |||||||||    
T  27447880 tagacatttgatatatgtgtggctaaaatttcaaagaaaaaataatgca 27447832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 1975429 - 1975371
Alignment:
Q  296 tagacattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||||| |||||||||||    
T  1975429 tagacattcggtatatgtgtggttaaaattttaaagaaaaaataatgtaaactatatta 1975371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 16461794 - 16461747
Alignment:
Q  307 tatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  16461794 tatatatggggctaaaatttcaaagaaacaataatgcaaactatatta 16461747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 347
Target Start/End: Complemental strand, 17849005 - 17848977
Alignment:
Q  319 taaaattttaaagaaacaataatgcaaac 347  Q
    |||||||||||||||||||||||||||||    
T  17849005 taaaattttaaagaaacaataatgcaaac 17848977  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 300 - 354
Target Start/End: Original strand, 23347790 - 23347844
Alignment:
Q  300 cattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||||||||||| |||||||||||||| ||| |||||||||||||||||||||||    
T  23347790 cattcggtatatgtgtggctaaaatttcaaataaacaataatgcaaactatatta 23347844  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 9516830 - 9516773
Alignment:
Q  297 agacattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||||||  ||||||||| |||||||||||| |||||||||||||||||| |||||||    
T  9516830 agacatttagtatatatggggctaaaattttgaagaaacaataatgcaaattatatta 9516773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 10781401 - 10781365
Alignment:
Q  317 gctaaaattttaaagaaacaataatgcaaactatatt 353  Q
    |||||||||||||||||||||||||||||||||||||    
T  10781401 gctaaaattttaaagaaacaataatgcaaactatatt 10781365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 281202 - 281154
Alignment:
Q  306 gtatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||||| || |||||||||||| |||||||||||||||||| |||||||    
T  281202 gtatatgtggggctaaaattttgaagaaacaataatgcaaattatatta 281154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 10638038 - 10638097
Alignment:
Q  297 agacattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactatattata 356  Q
    ||||||||| |||| ||||| |||||||||||||||||| || ||||||| |||| ||||    
T  10638038 agacattcgatataaatgtgactaaaattttaaagaaactatgatgcaaattataatata 10638097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 9539796 - 9539762
Alignment:
Q  319 taaaattttaaagaaacaataatgcaaactatatt 353  Q
    |||||||| ||||||||||||||||||||||||||    
T  9539796 taaaatttcaaagaaacaataatgcaaactatatt 9539762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 354
Target Start/End: Original strand, 34912305 - 34912343
Alignment:
Q  316 ggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  34912305 ggctaaaattttaaagaaacaataatacaagctatatta 34912343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 39299303 - 39299269
Alignment:
Q  319 taaaattttaaagaaacaataatgcaaactatatt 353  Q
    |||||||||||| ||||||||||||||||||||||    
T  39299303 taaaattttaaaaaaacaataatgcaaactatatt 39299269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 43909440 - 43909383
Alignment:
Q  297 agacattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||||||  |||||| || | |||||||||| |||||||||||||||||| |||||||    
T  43909440 agacatttagtatatgtgggactaaaattttgaagaaacaataatgcaaattatatta 43909383  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 35676431 - 35676373
Alignment:
Q  295 ttagacattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||||||||| | ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  35676431 ttagacattcagcatatatgtggctaaaatttcaaagaaa-aataatgcaaactatatta 35676373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 33824891 - 33824852
Alignment:
Q  315 tggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  33824891 tggctaaaattttaaagaaacaataatgcaaaatatatta 33824852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 5568945 - 5569000
Alignment:
Q  297 agacattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    ||||||||||||| |  ||||||||||||| ||||||| |||||||||||||||||||    
T  5568945 agacattcggtatgt--gtggctaaaatttaaaagaaaaaataatgcaaactatatta 5569000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 36744891 - 36744925
Alignment:
Q  320 aaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||||||||||||||||||||||||||||||||||    
T  36744891 aaaattttaaagaaacaataatgcaaactatatta 36744925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 980314 - 980267
Alignment:
Q  307 tatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    ||||||||||| ||||||||| |||||| ||||||||||| |||||||    
T  980314 tatatatgtggttaaaattttgaagaaataataatgcaaattatatta 980267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 5069771 - 5069829
Alignment:
Q  296 tagacattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||||||| |||| || || ||| |||| |||||||||||||||||| |||||||||||    
T  5069771 tagacatttggtacatgtggggcaaaaaatttaaagaaacaataatgtaaactatatta 5069829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 34751233 - 34751195
Alignment:
Q  316 ggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  34751233 ggctaaaatttcaaagaaacaataatgcaaattatatta 34751195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 22536910 - 22536946
Alignment:
Q  318 ctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  22536910 ctaaatttttaaagaaacaataatgcaaactgtatta 22536946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 52849905 - 52849846
Alignment:
Q  295 ttagacattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    ||||||||| | || ||||| |||||||||||||||||||||||||| ||||||||||||    
T  52849905 ttagacatttgatacatatgaggctaaaattttaaagaaacaataatacaaactatatta 52849846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 2813928 - 2813977
Alignment:
Q  305 ggtatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||||||    
T  2813928 ggtatatatggagctaaaatttcaaagaaacaataatgcaaactatatta 2813977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 36247778 - 36247815
Alignment:
Q  317 gctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36247778 gctaaaattttaaagaaacaataatgcaaactatatta 36247815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 1111929 - 1111981
Alignment:
Q  296 tagacattcggtatatatgtggctaaaattttaaagaaacaataatgcaaact 348  Q
    |||||||||  |||||||||||||||||||| || |||| |||||||||||||    
T  1111929 tagacattcaatatatatgtggctaaaatttcaatgaaataataatgcaaact 1111981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 4377187 - 4377224
Alignment:
Q  317 gctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  4377187 gctataatttcaaagaaacaataatgcaaactatatta 4377224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 1758219 - 1758255
Alignment:
Q  316 ggctaaaattttaaagaaacaataatgcaaactatat 352  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  1758219 ggctaaaatttcaaagaaacaataatgtaaactatat 1758255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 44873236 - 44873273
Alignment:
Q  317 gctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44873236 gctaaaattttaaagaaacaataatgcaaactatatta 44873273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 6802891 - 6802836
Alignment:
Q  299 acattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    ||||| ||||||| |||| ||||||||  |||||||||||||||||||||||||||    
T  6802891 acatttggtatatttgtgactaaaattagaaagaaacaataatgcaaactatatta 6802836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 29866101 - 29866152
Alignment:
Q  305 ggtatatatgtggctaaaattttaaagaaacaataatgcaaactatattata 356  Q
    ||||||| || ||||||| ||||||||||| |||||||||||||||||||||    
T  29866101 ggtatatgtggggctaaacttttaaagaaaaaataatgcaaactatattata 29866152  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 7681539 - 7681481
Alignment:
Q  296 tagacattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||||||| ||||||| ||||| |||||||| ||||||| |||||| ||||||||||||    
T  7681539 tagacatttggtatatgtgtggttaaaatttcaaagaaataataatacaaactatatta 7681481  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 29841344 - 29841288
Alignment:
Q  296 tagacattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactatat 352  Q
    ||||||||||||||  |||||||||| ||||||||  || |||||||||||||||||    
T  29841344 tagacattcggtatccatgtggctaacattttaaaataataataatgcaaactatat 29841288  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 354
Target Start/End: Original strand, 10381371 - 10381409
Alignment:
Q  316 ggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  10381371 ggctaaaatttcaaagaaacaataatgtaaactatatta 10381409  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 24309827 - 24309864
Alignment:
Q  317 gctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||||||||| |||||||||||||||||||||||||||    
T  24309827 gctaaaatttcaaagaaacaataatgcaaactatatta 24309864  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 30136514 - 30136569
Alignment:
Q  296 tagacattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactatat 352  Q
    |||||||||||||||| |||| ||||||||||||| ||| |||||||||||| ||||    
T  30136514 tagacattcggtatatgtgtgactaaaattttaaa-aaaaaataatgcaaacaatat 30136569  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 30142643 - 30142698
Alignment:
Q  296 tagacattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactatat 352  Q
    |||||||||||||||| |||| ||||||||||||| ||| |||||||||||| ||||    
T  30142643 tagacattcggtatatgtgtgactaaaattttaaa-aaaaaataatgcaaacaatat 30142698  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 30146065 - 30146120
Alignment:
Q  296 tagacattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactatat 352  Q
    |||||||||||||||| |||| ||||||||||||| ||| |||||||||||| ||||    
T  30146065 tagacattcggtatatgtgtgactaaaattttaaa-aaaaaataatgcaaacaatat 30146120  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 6714541 - 6714498
Alignment:
Q  299 acattcggtatatatgtggctaaaattttaaagaaacaataatg 342  Q
    |||||||||| ||||||| ||||||||||||||||| |||||||    
T  6714541 acattcggtagatatgtgactaaaattttaaagaaataataatg 6714498  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 19832082 - 19832044
Alignment:
Q  316 ggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  19832082 ggctaaaattttgaagaaacaataatgcaaattatatta 19832044  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 35504281 - 35504223
Alignment:
Q  296 tagacattcggtatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||| ||| ||| ||| |||||||||||||| ||||||| ||||||||||| |||||||    
T  35504281 tagatatttggtgtatgtgtggctaaaatttaaaagaaaaaataatgcaaattatatta 35504223  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 7856448 - 7856485
Alignment:
Q  317 gctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  7856448 gctaaaatttcaaagaaacaataatgcaaattatatta 7856485  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 36475406 - 36475455
Alignment:
Q  305 ggtatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    ||||||| || || |||||||| ||||||||||||| |||||||||||||    
T  36475406 ggtatatgtggggttaaaatttcaaagaaacaataacgcaaactatatta 36475455  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 7899424 - 7899472
Alignment:
Q  306 gtatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||||| || |||||||||||| |||||||||||||||||| |||||||    
T  7899424 gtatatgtggggctaaaattttgaagaaacaataatgcaaattatatta 7899472  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 26050105 - 26050152
Alignment:
Q  307 tatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    ||||| || |||||||||||| |||||||||||||||||| |||||||    
T  26050105 tatatgtggggctaaaattttgaagaaacaataatgcaaattatatta 26050152  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 26059464 - 26059511
Alignment:
Q  307 tatatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    ||||| || |||||||||||| |||||||||||||||||| |||||||    
T  26059464 tatatgtggggctaaaattttgaagaaacaataatgcaaattatatta 26059511  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 26782119 - 26782164
Alignment:
Q  299 acattcggtatatatgtggctaaaattttaaagaaacaataatgca 344  Q
    |||||||||||||||||||||||||||| ||| ||| |||| ||||    
T  26782119 acattcggtatatatgtggctaaaatttcaaataaaaaatattgca 26782164  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 49143956 - 49143993
Alignment:
Q  317 gctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  49143956 gctaaaattttaaagaaaaaataatacaaactatatta 49143993  T

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Target: scaffold0535 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 9615 - 9660
Alignment:
Q  309 tatatgtggctaaaattttaaagaaacaataatgcaaactatatta 354  Q
    ||||||||| |||||||| ||||||| |||||||||||| ||||||    
T  9615 tatatgtggttaaaatttcaaagaaaaaataatgcaaacaatatta 9660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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