View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_32 (Length: 364)
Name: NF16006_low_32
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 29245361 - 29245642
Alignment:
| Q |
1 |
tattatacctttcctttcaaatctccgtccattttttactattagattagataatctaagtgaaagttggtccttcctaattaccattaatcatgctaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||| |
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| T |
29245361 |
tattatacctttcctttcaaatctccgtccattttttactattagattagataat--aagtgaaatttggtccttc---attaccattaatcatgctaat |
29245455 |
T |
|
| Q |
101 |
caataaagaaaagggtgtgtgtacaattgcatgggggatgaggatggatgggattgtcaattgtgtgaacaaacaaactaatattaagcgttggtaaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29245456 |
caataaagaaaagggtgtgtgtacaattgcatgggggatcaggatggatgggattgtcaattgtgtgaacaaacaaactaatattaagcgttggtaaata |
29245555 |
T |
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| Q |
201 |
aatgggtcatgtattgttgttgttgatggggttctcttccgccattcgaattctttctactatctatggtatggcccatgcgtctctcccta |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
29245556 |
aatgggtcatgtattgttgttgttgatggggttctcttctgcccttcgaattctttgtactatc-----tatggcccatgcgtctctcccta |
29245642 |
T |
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Back To:
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Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 40985684 - 40985949
Alignment:
| Q |
1 |
tattatacctttcctttcaaatctccgtccatttttt-actattagattagataatctaagtgaaagttggtccttcctaattaccattaatcatgctaa |
99 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||| |||||||||| |||||||||||||||||||| |
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| T |
40985684 |
tattatacctttcctttcaaatctccgtccatttttttactattacattagataat--aagtgaaatttggtccttc---attaccattaatcatgctaa |
40985778 |
T |
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| Q |
100 |
ccaataaagaaaagggtgtgtgtacaattgcatgggggatgaggatggatgggattgtcaattgtgtgaacaaacaaactaatattaagcgttggtaaat |
199 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40985779 |
tcaataaataaaagggtgtgtgtacaattgcatgg-----------------gattgtcaattgtgtgaacaaacaaactaatattaagcgttggtaaat |
40985861 |
T |
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| Q |
200 |
aaatgggtcatgtattgttgttgttgatggggttctcttccgccattcgaattctttctactatctatggtatggcccatgcgtctctcccta |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40985862 |
aaatgggtcatgtattgttgttgttgatggggttctcttctgcccttcgaattctttctactatc-----tatggcccatgcgtctctcccta |
40985949 |
T |
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