View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_36 (Length: 338)
Name: NF16006_low_36
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 33277762 - 33277436
Alignment:
| Q |
1 |
cactaagtgtgtagaagtgtggaattccgggtttcaaccctagagatttactctttttgtttgctgaatagggaccatactattgtggtgttggtgctga |
100 |
Q |
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| T |
33277762 |
cactaagtgtgtagaattgtggaattccgggtttcaaccctaaagatttactctttttgtttgctgaatagggaccatactattgtggtgttggtgctga |
33277663 |
T |
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| Q |
101 |
aaaggcattagggcgtgatattgttgatgcacattacaaagcatgcctttatgctggcattaacatcagtggtgttaatggagaagttatgcctagccag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33277662 |
aaaggcattagggcgtgatattgttgatgcacattacaaagcatgcctttatgctggcattaacatcagtggtgttaatggagaagttatgcctagccag |
33277563 |
T |
|
| Q |
201 |
gtatgtaagtttaaacatttgatgttccacaattttgacattcacattttatgttacatttttaatttaatttgattgttatatgtagtgggaatttcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33277562 |
gtatgtaagtttaaacatttgatgttccacaattttgacattcacaatttatgttacatttttaatttaatttgattggtatatgtagtgggaatttcaa |
33277463 |
T |
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| Q |
301 |
gtaggtccagttgttggcatctctgct |
327 |
Q |
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| T |
33277462 |
gtaggtccagttgttggcatctctgct |
33277436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 60 - 194
Target Start/End: Complemental strand, 29442226 - 29442092
Alignment:
| Q |
60 |
tttgctgaatagggaccatactattgtggtgttggtgctgaaaaggcattagggcgtgatattgttgatgcacattacaaagcatgcctttatgctggca |
159 |
Q |
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| T |
29442226 |
tttgctcaatagggaccatactattgtggtgctggtgctgacaaggcatttggccgtgacattgttgactcacattacaaagcctgtctttatgccggca |
29442127 |
T |
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| Q |
160 |
ttaacatcagtggtgttaatggagaagttatgcct |
194 |
Q |
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| T |
29442126 |
tcaacatcagtggaatcaatggtgaagtgatgcct |
29442092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 26249334 - 26249200
Alignment:
| Q |
70 |
agggaccatactattgtggtgttggtgctgaaaaggcattagggcgtgatattgttgatgcacattacaaagcatgcctttatgctggcattaacatcag |
169 |
Q |
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|||| ||||| |||||||| |||||||||| || || | || ||||| ||||||||||||||||||||||| || |||||||||||||||||||| || |
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| T |
26249334 |
agggcccatattattgtgggattggtgctgataaagcctatggtcgtgacattgttgatgcacattacaaagcttgtctttatgctggcattaacattag |
26249235 |
T |
|
| Q |
170 |
tggtgttaatggagaagttatgcctagccaggtat |
204 |
Q |
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||| | |||||||| ||||||||| | ||||||| |
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| T |
26249234 |
tggcatcaatggagaggttatgcctggtcaggtat |
26249200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 7192841 - 7192763
Alignment:
| Q |
125 |
tgatgcacattacaaagcatgcctttatgctggcattaacatcagtggtgttaatggagaagttatgcctagccaggta |
203 |
Q |
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|||||| |||||||| || || | |||||||| ||||||||||||||| ||||| ||| ||||||||| |||||||| |
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| T |
7192841 |
tgatgctcattacaaggcttgtttatatgctggaattaacatcagtggtactaatgcagaggttatgcctggccaggta |
7192763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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