View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16006_low_38 (Length: 328)
Name: NF16006_low_38
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 138 - 314
Target Start/End: Original strand, 40666351 - 40666527
Alignment:
| Q |
138 |
atgatagttgcagtattaataagggttttcaatttcctcaaatttccagttgctcatttacgattttactctgtaggttgatttggagagaatttcaaaa |
237 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40666351 |
atgatagctgcagtattaataaggtttttcaatttcctcaaattttcagttgctcatttacgattttactctgtaggttgatttggagagaatttcaaaa |
40666450 |
T |
|
| Q |
238 |
aatactcatgggtatgttggtgctgaccttgctgctctttgcactgaagctgctctccaatgcattagggagaagat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40666451 |
aatactcatgggtatgttggtgctgaccttgctgctctttgcactgaagctgctctacaatgcattagggagaagat |
40666527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 163 - 314
Target Start/End: Complemental strand, 40723629 - 40723479
Alignment:
| Q |
163 |
ttttcaatttcctcaaatttccagttgctcatttacgattttactctgtaggttgatttggagagaatttcaaaaaatactcatgggtatgttggtgctg |
262 |
Q |
| |
|
||||| |||||||||||||| || | || ||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40723629 |
ttttcgatttcctcaaattttcattcgcacatttacgacttt-ctctgtaggttgatttggagagaatttcaaaagatactcatgggtatgttggtgctg |
40723531 |
T |
|
| Q |
263 |
accttgctgctctttgcactgaagctgctctccaatgcattagggagaagat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40723530 |
accttgctgctctttgcactgaagctgctctacaatgcattagggagaagat |
40723479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University