View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_4 (Length: 719)
Name: NF16006_low_4
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 231 - 699
Target Start/End: Original strand, 41813558 - 41814031
Alignment:
| Q |
231 |
gtgtccatagatccaaatggtaccatgtgagagaatcaaaatagagtataatcttctgaaaattagctagctagccaacaatttgagactaacaaggaga |
330 |
Q |
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| T |
41813558 |
gtgtccatagatccaaatggtaccatgtgagagaatcaaaatagagtataatcttctgaaagttagctagctagccaacaatttgagactaacaaggaga |
41813657 |
T |
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| Q |
331 |
atctcaatctcttcgtgaagaatatttgaccatcctatactcctatggaatccaaattagaagctcaatcataattctatacaagtccttcaattctgct |
430 |
Q |
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| T |
41813658 |
atctcaatctcttcgtgaagaatatttgaccatcctatactcctatgaaatccaaattagaagctcaatcataattctatacaagtccttcaattctgct |
41813757 |
T |
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| Q |
431 |
ctcagtggattagtcatagcaatgtcatctacattaagctcaagtgtatcctgatcacccttctgccatcgaacctcgcaaataggagaatgagaccact |
530 |
Q |
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| T |
41813758 |
ctcagtggattagtcatagcaatgtcatctacattaagctctagtgtatcctgatcaaccttctgccatcggacctcgcaaataggagaatgagaccact |
41813857 |
T |
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| Q |
531 |
ctacggaagctgatataattgaatgtcaaatcgaatgtaattcttcaaaaatgatttcattccaag-----taaatgttccacatgaatccatgatcaca |
625 |
Q |
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| T |
41813858 |
ctacggaagctgatataattgaatgtcgaatcgaatgtaattcttcaaaaatgatttcattccaagaggcaaaaatgttccacatgaatccatgatcaca |
41813957 |
T |
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| Q |
626 |
ggatcaataatactaacatcacatacatttgacaatccaacgcaaaatgttatcgtgactaaattgatgagcac |
699 |
Q |
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| T |
41813958 |
ggatcaataatactaacatcacatacatttgacaatccaacgcaaaatgttatcgtgactaaattgatgagcac |
41814031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 7 - 183
Target Start/End: Original strand, 41813329 - 41813508
Alignment:
| Q |
7 |
tccaagaatataaattaacaaagatgagaagagacacgacaacgcttcagagtttagacaataataaa----gctgtccaaacaattagcttataatttc |
102 |
Q |
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| T |
41813329 |
tccaacaatataaactaataaagatgagaagagacatgacaacgcttcagaattcagacaataattaattaaggtgcccaaacaattagcttacaatttc |
41813428 |
T |
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| Q |
103 |
gttagaatatttgtacaagtattgtcctcatgaaagagtgtgatgaagagagaaaaattgcaatcattcttcacgtacttt |
183 |
Q |
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| T |
41813429 |
gttagaatatttgtacaactattgtcctcatg-aagagtgtgatgaagagagaaaaattgcaatctttcttcacgtacttt |
41813508 |
T |
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