View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_41 (Length: 320)
Name: NF16006_low_41
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_41 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 35312101 - 35311808
Alignment:
| Q |
16 |
aatatctcgggagcactcgtcaaataaaacactgtcttacgatgttttctacttttagttttggttcatcatcactgtctggatctcaataactcacaat |
115 |
Q |
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| T |
35312101 |
aatatctcgggagcatttgtcaaataaaacactgtcttacgatgttttctacttttagttttggttcatcatcactgtctgga-----------cacaat |
35312013 |
T |
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| Q |
116 |
gtttcaattaattaatttgtagcttggaggaccctcatggacagtaccccttggaagaagagatgcaagaacagcaaaccaaagtgaagccgatagccaa |
215 |
Q |
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| T |
35312012 |
gtttcaattaattaatttgtagcttggaggaccctcatggacagtaccacttggaagaagagatgcaagaacagcaaatcaaagtgcagcaaatagccaa |
35311913 |
T |
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| Q |
216 |
cttcctcaaccatcctttgacctaaccagactcactacaatgtttttagccaagggtctaactgcaaatgatctcactgtactttctggtgcacacacca |
315 |
Q |
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| T |
35311912 |
atccctagaccatcctttaacctaaccagactcactacaatgtttttagccaagggtctaactgcaagtgatctcacagtactttctggtgcacacacca |
35311813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 130 - 320
Target Start/End: Complemental strand, 35307652 - 35307462
Alignment:
| Q |
130 |
atttgtagcttggaggaccctcatggacagtaccccttggaagaagagatgcaagaacagcaaaccaaagtgaagccgatagccaacttcctcaaccatc |
229 |
Q |
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| T |
35307652 |
atttgtagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccatt |
35307553 |
T |
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| Q |
230 |
ctttgacctaaccagactcactacaatgtttttagccaagggtctaactgcaaatgatctcactgtactttctggtgcacacaccataggc |
320 |
Q |
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| T |
35307552 |
ttctgacctttccactctcactacaatgttttcagccaagggtctaactgcaagtgacctcacagtactttctggtgcacacaccataggc |
35307462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 130 - 320
Target Start/End: Complemental strand, 35322653 - 35322463
Alignment:
| Q |
130 |
atttgtagcttggaggaccctcatggacagtaccccttggaagaagagatgcaagaacagcaaaccaaagtgaagccgatagccaacttcctcaaccatc |
229 |
Q |
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| T |
35322653 |
atttgtagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccatt |
35322554 |
T |
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| Q |
230 |
ctttgacctaaccagactcactacaatgtttttagccaagggtctaactgcaaatgatctcactgtactttctggtgcacacaccataggc |
320 |
Q |
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| T |
35322553 |
ttctgacctttccactctcaccaaaatgtttacagacaagggtctaactgcaagtgacctcacagtactttctggtgcacacaccataggc |
35322463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 131 - 319
Target Start/End: Complemental strand, 35289853 - 35289665
Alignment:
| Q |
131 |
tttgtagcttggaggaccctcatggacagtaccccttggaagaagagatgcaagaacagcaaaccaaagtgaagccgatagccaacttcctcaaccatcc |
230 |
Q |
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| T |
35289853 |
tttgtagcttggaggtccttcatgggtagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatct |
35289754 |
T |
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| Q |
231 |
tttgacctaaccagactcactacaatgtttttagccaagggtctaactgcaaatgatctcactgtactttctggtgcacacaccatagg |
319 |
Q |
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| T |
35289753 |
tctgacctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttactgtcctttctggtgcacacaccatagg |
35289665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 319
Target Start/End: Complemental strand, 35275756 - 35275553
Alignment:
| Q |
114 |
atgtttcaattaattaatttgtagcttggaggaccctcatggacagtaccccttggaagaagagatgcaagaacagcaaaccaaagtgaagccgatagcc |
213 |
Q |
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| T |
35275756 |
atgtttcaattaatttatat--agcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagcc |
35275659 |
T |
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| Q |
214 |
aacttcctcaaccatcctttgacctaaccagactcactacaatgtttttagccaagggtctaactgcaaatgatctcactgtactttctggtgcacacac |
313 |
Q |
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| T |
35275658 |
aaatccctggaccatcttctgacctatcgacactcactagaatgtttcaaaacaaaagtctaacattaaatgaccttacagtcctatctggtgcacacac |
35275559 |
T |
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| Q |
314 |
catagg |
319 |
Q |
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|||||| |
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| T |
35275558 |
catagg |
35275553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 320
Target Start/End: Complemental strand, 35280563 - 35280319
Alignment:
| Q |
74 |
ttttggttcatcatcactgtctggatctcaataactcacaatgtttcaattaattaatttgtagcttggaggaccctcatggacagtaccccttggaaga |
173 |
Q |
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||||| |||||||| ||| |||| ||| |||||| | || ||||||||||||| | | ||||||||||| || ||||||| |||||| ||||||||| |
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| T |
35280563 |
ttttgattcatcattactttctgaatcacaataattaaccttgtttcaattaat--ctatatagcttggaggtccttcatggatagtaccacttggaaga |
35280466 |
T |
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| Q |
174 |
agagatgcaagaacagcaaaccaaagtgaagccgatagccaacttcctcaaccatcctttgacctaaccagactcactacaatgtttttagccaagggtc |
273 |
Q |
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||||||||||||||||||| ||||||| ||| | | |||| | ||| |||| | | ||||||| ||| |||||||| ||||||| | ||| |||| |
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| T |
35280465 |
agagatgcaagaacagcaagtcaaagtgcagcaaacacccaaatcccttcaccagcttctgacctatccacactcactaaaatgtttcaaaacaaaggtc |
35280366 |
T |
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| Q |
274 |
taactgcaaatgatctcactgtactttctggtgcacacaccataggc |
320 |
Q |
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| T |
35280365 |
taacattaagagaccttacagtcctttctggtgcacacaccataggc |
35280319 |
T |
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