View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_42 (Length: 319)
Name: NF16006_low_42
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 44841691 - 44841390
Alignment:
| Q |
1 |
tttcttacctcatgtatatctgtgttcttcttgtagttttgctacttagatcgtgaggtggaaccgagggaggttgatgctgatgaatgtggaacaaggc |
100 |
Q |
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| T |
44841691 |
tttcttacctcatgtatatctgtgttcttcttgtagttttgctacttagatcgtgaggtggaactgagggaggttgatgccgatgaatgtggaacaaggc |
44841592 |
T |
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| Q |
101 |
cttccatatactgatgatgttaccttatggccaataatgtgtcctaacattactattttatcaggattattttggtgtgtatccacttatgaaggtgtat |
200 |
Q |
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| T |
44841591 |
cttccatatactgatgatgttaccttatggccaataatgtgtcctaacattactattttatcaggattattttggtgtgtatccacttatgaaggtgtgt |
44841492 |
T |
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| Q |
201 |
gttatcacctctcacaaacctcactactctgtgtgtaatgctatgacgtttttgaaatacgtttctgagtgtaattgcatctttaacatttgtatctgat |
300 |
Q |
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| T |
44841491 |
gttatcacctctcacaaacctcacaactctgtgtgtaatgctataacgtttttgaaatacgtttctgagtgtaattgcatctttaacatttgtatctgat |
44841392 |
T |
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| Q |
301 |
gt |
302 |
Q |
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| T |
44841391 |
gt |
44841390 |
T |
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