View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_44 (Length: 317)
Name: NF16006_low_44
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 303
Target Start/End: Complemental strand, 12752787 - 12752493
Alignment:
| Q |
9 |
gattattcttgtcaacaaagtcgcaagtttcctgaaaatgatgatgttattgatgcttctccttgccgcaaacaatttcctgctgggccattaaatcaga |
108 |
Q |
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| T |
12752787 |
gattattcttgtcaacaaagtcgcaagtttcctgaaaatgacgatgttattgatgcttctccttgccgcaaacaatttcctgctgggccatcaaatcaga |
12752688 |
T |
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| Q |
109 |
aaactcttcatttgaatggatcggaagatatcagcgcccaagtgctacctgtgaattatgccagcccgactggcattgcaaagcctggtgggagttcata |
208 |
Q |
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| T |
12752687 |
aaactcttcatttgaatggatcggaagatatcagcgcccaagtgctacctgtgaattatgccagcccgactggcattgcaaagcctggtgggagttcata |
12752588 |
T |
|
| Q |
209 |
tgctgagaatgttgctcctgataaaagcaaatgcagtctggaagctaatgattttatagagaatgatgttttcaatgccttaactcctcccaact |
303 |
Q |
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| T |
12752587 |
tgctgagaatgttgctcctgataaaagcaaatgcagtctggaagctaatgattttatagagaatgatgttttcaatgccttaactcctcccaact |
12752493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 303
Target Start/End: Complemental strand, 12815747 - 12815453
Alignment:
| Q |
9 |
gattattcttgtcaacaaagtcgcaagtttcctgaaaatgatgatgttattgatgcttctccttgccgcaaacaatttcctgctgggccattaaatcaga |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12815747 |
gattattcttgtcaacaaagtcgcaagtttcctgaaaatgacgatgttattgatgcttctccttgccgcaaacaatttcctgctgggccatcaaatcaga |
12815648 |
T |
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| Q |
109 |
aaactcttcatttgaatggatcggaagatatcagcgcccaagtgctacctgtgaattatgccagcccgactggcattgcaaagcctggtgggagttcata |
208 |
Q |
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| T |
12815647 |
aaactcttcatttgaatggatcagaagatatcagcgcccaagtgctacctgtgaattatgccagcccgactggcattgcaaagcctggtgggagttcata |
12815548 |
T |
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| Q |
209 |
tgctgagaatgttgctcctgataaaagcaaatgcagtctggaagctaatgattttatagagaatgatgttttcaatgccttaactcctcccaact |
303 |
Q |
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| T |
12815547 |
tgctgagaatgttgctcctgataaaagcaaatgcagtctggaagctaatgattttatagagaatgatgttttcaatgccttaactcctcccaact |
12815453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 303
Target Start/End: Original strand, 7768095 - 7768215
Alignment:
| Q |
183 |
attgcaaagcctggtgggagttcatatgctgagaatgttgctcctgataaaagcaaatgcagtctggaagctaatgattttatagagaatgatgttttca |
282 |
Q |
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|||||||||| | |||| |||||||||| | |||||||||||||||||| || | || ||||| |||||| | ||||||| | ||||||||||| ||||| |
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| T |
7768095 |
attgcaaagcttagtggaagttcatatgttaagaatgttgctcctgatagaaacgaacgcagtttggaagtttatgatttcacagagaatgatgatttca |
7768194 |
T |
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| Q |
283 |
atgccttaactcctcccaact |
303 |
Q |
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|| | ||||||||| |||||| |
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| T |
7768195 |
atcctttaactccttccaact |
7768215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 301
Target Start/End: Original strand, 7779081 - 7779195
Alignment:
| Q |
187 |
caaagcctggtgggagttcatatgctgagaatgttgctcctgataaaagcaaatgcagtctggaagctaatgattttatagagaatgatgttttcaatgc |
286 |
Q |
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|||||| |||||| |||||||||||| ||||||||||| |||||| | |||| ||||| | |||| | ||||||| | |||||| || | ||||||| | |
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| T |
7779081 |
caaagcttggtggaagttcatatgctaagaatgttgcttctgatagcaacaaacgcagtttagaagtttatgatttcacagagaacgacgatttcaatcc |
7779180 |
T |
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| Q |
287 |
cttaactcctcccaa |
301 |
Q |
| |
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|||||||| |||| |
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| T |
7779181 |
tgtaactccttccaa |
7779195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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