View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16006_low_45 (Length: 315)
Name: NF16006_low_45
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_45 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 138 - 303
Target Start/End: Complemental strand, 51231571 - 51231406
Alignment:
| Q |
138 |
aaggcaaggagaatatattaaatggaaatatagagtatatcactataacgtagactccatccaaaaataatgacaaggcaaataaagaaaaacaccccaa |
237 |
Q |
| |
|
||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51231571 |
aaggctaggagaatatataaaaaggaaatatagagtatatcactataacgtagactccatccaaaaataatgacaaggcaaataaagaaaaacaccccaa |
51231472 |
T |
|
| Q |
238 |
aagagagagcactgcgtacatatacagccatatggaagggacctaaataaagataccccacagaat |
303 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51231471 |
aagagagagcactgtgtacatatacagccatatggaagggacctaaataaagataccccacagaat |
51231406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 51231707 - 51231649
Alignment:
| Q |
1 |
tatatcatacaatcataattcgtttgtttttgacagaatttctactgatatagttcatc |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
51231707 |
tatatcatacaatcataattcgtttgtttttgacagaatttatactgatatagttcatc |
51231649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University